Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0016958

Physical Location & Seq

Genomic Coordinates Reverse (-)

35662724 .. 35679239

Gene Structure 16516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG206500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGTCAGGTTTTGAGGAAACTTTTGGGGATGTTATATTTGATGCGGAGTATCCGATGTCTGCACCCGATATTATATTCGGACCTGAAGATGAAAGTTTTCAGCAGTTTCTTGTATTGCATGGTGAAGATCCGAAGTCTCTCATGAACCGTTTGGGTGGTTGGGATAGCAGAGACCCTACGCAGCTCATGCTTCTCGTTCAAGAACTGAGAGATCAATACATGGCCTACCAGATGAAGCGTGTTGGAGAGGTTCAAGATGACCGCGTGAAATTTGAAATTAGCACAATTGCTTTTCGGGAGGGAATTGAGATGCACTTGAGTTCTGGATATGATAAGATCGGTGGTGGATTGAAGCTCACTGGCTTTGGTGGATTGAAGCTCACTTCTGCGGCTATGGGAGCCAACCTTGGACGTCTTGATGGGATTTCCATAACTTTCTTGAAACCCAGATCAGTCAAGGCTCACACTGCTTTTGGTATGGTGAAGCGCATTCATGAATACAAGAGACAACTTATGAATATTTTGGGAATTGTTTACCGGTACAAGAAAATGAAAGAAATGAGTGCTTCACAAAGGAAAACAAAGTTTGTTCCACGTGTTTGTATGTTCGGAGGAAAAGCATTTGCAACGTATGTACAAGCCAAAAGAATTGTGAAGTTTATCACAGATGTCGCGGAGACTGTAAATCATGATCCTAGTATAGGTGATCTACTGAAGGTTATCTTCGTACCTGATTATAATGTCAGTGTTGCTGAATTATTAATTCTTGCGAGTGAGCTCTCACAGCACATCAGTACTGCTGGCATGGAGGCCAGTGGCACCAGCAACATGAAGTTTGCAATGAATGGCTGCATCCTAATTGGGACTCTGGATGGAGCCAATGTTGAAATAAGAGAGGAGGTTGGAGCAGATATCTTTTTCCTCTTTGGTGCTGAAGCTCATGAGATTGCTGGGCTGAGAAAAGAACGAGCTGAAGGGAAGTTTGTTCCAGACCCCCGTTTTGAAGAAGTCAAGGAATTTGTCAGAAGTGGCGTTTTTGGGTCGTACAATTATGATGACCTGATCGGATCCAGAACAAGATATGTTCGGGTACTTGGTGCATTTTACTTGCGTATCACAGGCAGCGATACTAATGTCTACCAGTACCTAGAGCCTCTGTACAATGACTATCGGAAGTTGAGAAGTAAATTGGCTGATGGACGTTTCTCGTTGACTCATGTGGATGAGCTTATTGATGAAATTCTGACAAAGGACTACTCATGCGACATTGCCATGCCACGAATCAAGAAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004645 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005977 GO:0005980 GO:0006073 GO:0006091 GO:0006112 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0008184 GO:0009056 GO:0009057 GO:0009251 GO:0009266 GO:0009414 GO:0009415 GO:0009501 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009987 GO:0010035 GO:0015980 GO:0016052 GO:0016740 GO:0016757 GO:0016758 GO:0019842 GO:0030170 GO:0036094 GO:0042221 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0050662 GO:0050896 GO:0055114 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 ko02026 ko04217 ko04910 ko04922 ko04931 map00500 map01100 map01110 map02026 map04217 map04910 map04922 map04931

Pfam Domains

Protein Families

Phosphorylase

Protein Analysis

431

Amino Acids

48.6

Weight (kDa)

6.49

Isoelectric Point (pI)

37.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRE	PF06113	10 - 98	1.5e-11	Brain and reproductive organ-expressed protein (BRE)
Phosphorylase	PF00343	160 - 351	1.1e-75	Carbohydrate phosphorylase
PRP38	PF03371	356 - 431	2.2e-23	PRP38 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016958)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g06180 pycom17g05650 pycom17g05660
rosa_chinensis	RchiOBHm_Chr1g0375781
rosa_multiflora	Rmu_co8392471.1_g000001 Rmu_sc0000247.1_g000034
rosa_roxburghii	Rroxscaffold_1G00031980
rosa_samantha	Rh2BG532800 Rh2BG532900 Rh2DG541700 Rh2DG541800 Rh3DG289000 Rh4BG206500
rosa_wichuraiana	Rw3G015630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	738
AatII	GACGTC	1 cut(s)	415
AccB1I	GGYRCC	1 cut(s)	818
AccI	GTMKAC	1 cut(s)	1137
AccII	CGCG	2 cut(s)	264, 674
AciI	CCGC	4 cut(s)	44, 262, 389, 674
AclWI	GGATC	4 cut(s)	122, 686, 1062, 1075
AcsI	RAATTY	3 cut(s)	269, 1016, 1239
AcuI	CTGAAG	4 cut(s)	105, 734, 954, 993
AcvI	CACGTG	1 cut(s)	596
AcyI	GRCGYC	1 cut(s)	412
AfaI	GTAC	8 cut(s)	542, 636, 729, 796, 1046, 1092, 1145, 1160
AfiI	CCNNNNNNNGG	1 cut(s)	701
AflIII	ACRYGT	1 cut(s)	595
AgeI	ACCGGT	1 cut(s)	537
AgsI	TTSAA	8 cut(s)	200, 254, 275, 352, 376, 442, 887, 1004
AluBI	AGCT	7 cut(s)	184, 355, 379, 778, 938, 971, 1228
AluI	AGCT	7 cut(s)	184, 355, 379, 778, 938, 971, 1228
Alw21I	GWGCWC	1 cut(s)	780
Alw26I	GTCTC	4 cut(s)	141, 165, 499, 671
AlwI	GGATC	4 cut(s)	122, 686, 1062, 1075
AoxI	GGCC	2 cut(s)	222, 810
ApeKI	GCWGC	3 cut(s)	181, 849, 1122
ApoI	RAATTY	3 cut(s)	269, 1016, 1239
ArsI	GACNNNNNNTTYG	2 cut(s)	983, 1015
AseI	ATTAAT	1 cut(s)	761
AsiGI	ACCGGT	1 cut(s)	537
Asp700I	GAANNNNTTC	1 cut(s)	96
AspLEI	GCGC	1 cut(s)	489
AspS9I	GGNCC	1 cut(s)	80
AsuHPI	GGTGA	3 cut(s)	134, 493, 716
AvaII	GGWCC	1 cut(s)	80
BaeI	ACNNNNGTAYC	4 cut(s)	1096, 1119, 1129, 1152
BamHI	GGATCC	1 cut(s)	1067
BanI	GGYRCC	1 cut(s)	818
BanII	GRGCYC	1 cut(s)	780
BbrPI	CACGTG	1 cut(s)	596
Bbv12I	GWGCWC	1 cut(s)	780
BbvI	GCAGC	3 cut(s)	193, 836, 1134
BccI	CCATC	3 cut(s)	413, 866, 1190
BciVI	GTATCC	1 cut(s)	60
BcoDI	GTCTC	4 cut(s)	141, 165, 499, 671
BfaI	CTAG	2 cut(s)	696, 1148
BfuI	GTATCC	1 cut(s)	60
BisI	GCNGC	4 cut(s)	182, 390, 850, 1123
BlsI	GCNGC	4 cut(s)	183, 391, 851, 1124
BmcAI	AGTACT	1 cut(s)	796
Bme18I	GGWCC	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	80
BmiI	GGNNCC	4 cut(s)	400, 820, 877, 1069
BmsI	GCATC	3 cut(s)	31, 300, 861
BpuEI	CTTGAG	1 cut(s)	337
BsaAI	YACGTR	1 cut(s)	596
BsaHI	GRCGYC	1 cut(s)	412
BsaI	GGTCTC	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	406
BsaWI	WCCGGW	1 cut(s)	537
BsaXI	ACNNNNNCTCC	2 cut(s)	867, 897
Bsc4I	CCNNNNNNNGG	1 cut(s)	701
Bse118I	RCCGGY	1 cut(s)	537
Bse1I	ACTGG	3 cut(s)	364, 813, 1141
Bse3DI	GCAATG	2 cut(s)	846, 1266
BseDI	CCNNGG	1 cut(s)	406
BseGI	GGATG	4 cut(s)	34, 852, 877, 1228
BseLI	CCNNNNNNNGG	1 cut(s)	701
BseMI	GCAATG	2 cut(s)	846, 1266
BseMII	CTCAG	2 cut(s)	197, 947
BseNI	ACTGG	3 cut(s)	364, 813, 1141
BseRI	GAGGAG	1 cut(s)	911
BseXI	GCAGC	3 cut(s)	193, 836, 1134
BseYI	CCCAGC	1 cut(s)	950
BsgI	GTGCAG	1 cut(s)	45
Bsh1236I	CGCG	2 cut(s)	264, 674
BshFI	GGCC	2 cut(s)	224, 812
BshNI	GGYRCC	1 cut(s)	818
BshTI	ACCGGT	1 cut(s)	537
BsiHKAI	GWGCWC	1 cut(s)	780
BsiSI	CCGG	1 cut(s)	538
BslFI	GGGAC	1 cut(s)	877
BslI	CCNNNNNNNGG	1 cut(s)	701
BsmAI	GTCTC	4 cut(s)	141, 165, 499, 671
BsmFI	GGGAC	1 cut(s)	877
BsmI	GAATGC	1 cut(s)	489
BsnI	GGCC	2 cut(s)	224, 812
Bso31I	GGTCTC	1 cut(s)	165
Bsp1286I	GDGCHC	1 cut(s)	780
Bsp1407I	TGTACA	2 cut(s)	634, 1158
Bsp143I	GATC	8 cut(s)	127, 211, 336, 449, 691, 706, 1062, 1067
BspACI	CCGC	4 cut(s)	44, 262, 389, 674
BspANI	GGCC	2 cut(s)	224, 812
BspCNI	CTCAG	2 cut(s)	198, 948
BspFNI	CGCG	2 cut(s)	264, 674
BspHI	TCATGA	4 cut(s)	141, 493, 688, 940
BspLI	GGNNCC	4 cut(s)	400, 820, 877, 1069
BspPI	GGATC	4 cut(s)	122, 686, 1062, 1075
BspT107I	GGYRCC	1 cut(s)	818
BspTNI	GGTCTC	1 cut(s)	165
BsrDI	GCAATG	2 cut(s)	846, 1266
BsrFI	RCCGGY	1 cut(s)	537
BsrGI	TGTACA	2 cut(s)	634, 1158
BsrI	ACTGG	3 cut(s)	364, 813, 1141
BssAI	RCCGGY	1 cut(s)	537
BssECI	CCNNGG	1 cut(s)	406
BssMI	GATC	8 cut(s)	127, 211, 336, 449, 691, 706, 1062, 1067
BssNI	GRCGYC	1 cut(s)	412
BssT1I	CCWWGG	1 cut(s)	406
Bst4CI	ACNGT	2 cut(s)	149, 682
BstACI	GRCGYC	1 cut(s)	412
BstAPI	GCANNNNNTGC	1 cut(s)	187
BstAUI	TGTACA	2 cut(s)	634, 1158
BstBAI	YACGTR	1 cut(s)	596
BstC8I	GCNNGC	1 cut(s)	802
BstDEI	CTNAG	2 cut(s)	206, 956
BstENI	CCTNNNNNAGG	1 cut(s)	699
BstF5I	GGATG	4 cut(s)	34, 852, 877, 1228
BstFNI	CGCG	2 cut(s)	264, 674
BstHHI	GCGC	1 cut(s)	489
BstKTI	GATC	8 cut(s)	130, 214, 339, 452, 694, 709, 1065, 1070
BstMAI	GTCTC	4 cut(s)	141, 165, 499, 671
BstMBI	GATC	8 cut(s)	127, 211, 336, 449, 691, 706, 1062, 1067
BstMWI	GCNNNNNNNGC	4 cut(s)	187, 398, 467, 784
BstUI	CGCG	2 cut(s)	264, 674
BstV1I	GCAGC	3 cut(s)	193, 836, 1134
BstX2I	RGATCY	2 cut(s)	127, 1067
BstYI	RGATCY	2 cut(s)	127, 1067
BsuI	GTATCC	1 cut(s)	60
BsuRI	GGCC	2 cut(s)	224, 812
BtsCI	GGATG	4 cut(s)	34, 852, 877, 1228
BtsI	GCAGTG	1 cut(s)	465
BtsIMutI	CAGTG	4 cut(s)	357, 465, 751, 820
Cac8I	GCNNGC	1 cut(s)	802
CciI	TCATGA	4 cut(s)	141, 493, 688, 940
CfoI	GCGC	1 cut(s)	489
Cfr10I	RCCGGY	1 cut(s)	537
Cfr13I	GGNCC	1 cut(s)	80
Csp6I	GTAC	8 cut(s)	541, 635, 728, 795, 1045, 1091, 1144, 1159
CspAI	ACCGGT	1 cut(s)	537
CviQI	GTAC	8 cut(s)	541, 635, 728, 795, 1045, 1091, 1144, 1159
DdeI	CTNAG	2 cut(s)	206, 956
DpnI	GATC	8 cut(s)	129, 213, 338, 451, 693, 708, 1064, 1069
DpnII	GATC	8 cut(s)	127, 211, 336, 449, 691, 706, 1062, 1067
Ecl136II	GAGCTC	1 cut(s)	778
Eco130I	CCWWGG	1 cut(s)	406
Eco24I	GRGCYC	1 cut(s)	780
Eco31I	GGTCTC	1 cut(s)	165
Eco32I	GATATC	1 cut(s)	913
Eco47I	GGWCC	1 cut(s)	80
Eco53kI	GAGCTC	1 cut(s)	778
Eco57I	CTGAAG	4 cut(s)	105, 734, 954, 993
Eco72I	CACGTG	1 cut(s)	596
EcoICRI	GAGCTC	1 cut(s)	778
EcoNI	CCTNNNNNAGG	1 cut(s)	699
EcoRV	GATATC	1 cut(s)	913
EcoT14I	CCWWGG	1 cut(s)	406
EcoT38I	GRGCYC	1 cut(s)	780
ErhI	CCWWGG	1 cut(s)	406
FalI	AAGNNNNNCTT	2 cut(s)	707, 739
FaqI	GGGAC	1 cut(s)	877
FblI	GTMKAC	1 cut(s)	1137
Fnu4HI	GCNGC	4 cut(s)	182, 390, 850, 1123
FokI	GGATG	4 cut(s)	41, 839, 884, 1235
FriOI	GRGCYC	1 cut(s)	780
Fsp4HI	GCNGC	4 cut(s)	182, 390, 850, 1123
FspBI	CTAG	2 cut(s)	696, 1148
GlaI	GCGC	1 cut(s)	488
GluI	GCNGC	4 cut(s)	182, 390, 850, 1123
GsaI	CCCAGC	1 cut(s)	954
HaeIII	GGCC	2 cut(s)	224, 812
HapII	CCGG	1 cut(s)	538
HhaI	GCGC	1 cut(s)	489
Hin1I	GRCGYC	1 cut(s)	412
Hin6I	GCGC	1 cut(s)	487
HinP1I	GCGC	1 cut(s)	487
HincII	GTYRAC	1 cut(s)	1212
HindII	GTYRAC	1 cut(s)	1212
HinfI	GANTC	3 cut(s)	865, 1213, 1281
HpaII	CCGG	1 cut(s)	538
HphI	GGTGA	3 cut(s)	134, 493, 716
Hpy166II	GTNNAC	3 cut(s)	535, 1138, 1212
Hpy188I	TCNGA	8 cut(s)	54, 80, 132, 611, 1025, 1067, 1173, 1245
Hpy8I	GTNNAC	3 cut(s)	535, 1138, 1212
HpyAV	CCTTC	2 cut(s)	709, 968
HpyCH4III	ACNGT	2 cut(s)	149, 682
HpyCH4IV	ACGT	4 cut(s)	412, 595, 629, 1201
HpyCH4V	TGCA	7 cut(s)	62, 118, 313, 626, 839, 852, 1100
HpyF10VI	GCNNNNNNNGC	4 cut(s)	187, 398, 467, 784
HpyF3I	CTNAG	2 cut(s)	206, 956
HpySE526I	ACGT	4 cut(s)	412, 595, 629, 1201
Hsp92I	GRCGYC	1 cut(s)	412
HspAI	GCGC	1 cut(s)	487
Kzo9I	GATC	8 cut(s)	127, 211, 336, 449, 691, 706, 1062, 1067
LmnI	GCTCC	3 cut(s)	398, 875, 905
Lsp1109I	GCAGC	3 cut(s)	193, 836, 1134
LweI	GCATC	3 cut(s)	31, 300, 861
MaeI	CTAG	2 cut(s)	696, 1148
MaeII	ACGT	4 cut(s)	412, 595, 629, 1201
MalI	GATC	8 cut(s)	129, 213, 338, 451, 693, 708, 1064, 1069
MboI	GATC	8 cut(s)	127, 211, 336, 449, 691, 706, 1062, 1067
MboII	GAAGA	4 cut(s)	98, 137, 715, 1016
MfeI	CAATTG	1 cut(s)	285
MflI	RGATCY	2 cut(s)	127, 1067
MhlI	GDGCHC	1 cut(s)	780
MlyI	GAGTC	2 cut(s)	859, 1207
MmeI	TCCRAC	2 cut(s)	223, 883
MnlI	CCTC	9 cut(s)	7, 241, 292, 605, 802, 889, 892, 932, 1164
MroXI	GAANNNNTTC	1 cut(s)	96
MseI	TTAA	1 cut(s)	761
MslI	CAYNNNNRTG	2 cut(s)	1221, 1271
MspI	CCGG	1 cut(s)	538
MunI	CAATTG	1 cut(s)	285
Mva1269I	GAATGC	1 cut(s)	489
MvnI	CGCG	2 cut(s)	264, 674
MwoI	GCNNNNNNNGC	4 cut(s)	187, 398, 467, 784
NdeII	GATC	8 cut(s)	127, 211, 336, 449, 691, 706, 1062, 1067
NlaIV	GGNNCC	4 cut(s)	400, 820, 877, 1069
PagI	TCATGA	4 cut(s)	141, 493, 688, 940
PctI	GAATGC	1 cut(s)	489
PdmI	GAANNNNTTC	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	1281
PinAI	ACCGGT	1 cut(s)	537
PkrI	GCNGC	4 cut(s)	183, 391, 851, 1124
PleI	GAGTC	2 cut(s)	859, 1207
PmaCI	CACGTG	1 cut(s)	596
PmlI	CACGTG	1 cut(s)	596
PpsI	GAGTC	2 cut(s)	859, 1207
Ppu21I	YACGTR	1 cut(s)	596
PshBI	ATTAAT	1 cut(s)	761
PsiI	TTATAA	1 cut(s)	738
Psp124BI	GAGCTC	1 cut(s)	780
PspCI	CACGTG	1 cut(s)	596
PspFI	CCCAGC	1 cut(s)	950
PspN4I	GGNNCC	4 cut(s)	400, 820, 877, 1069
PspPI	GGNCC	1 cut(s)	80
PsuI	RGATCY	2 cut(s)	127, 1067
RsaI	GTAC	8 cut(s)	542, 636, 729, 796, 1046, 1092, 1145, 1160
RsaNI	GTAC	8 cut(s)	541, 635, 728, 795, 1045, 1091, 1144, 1159
RseI	CAYNNNNRTG	2 cut(s)	1221, 1271
SacI	GAGCTC	1 cut(s)	780
SaqAI	TTAA	1 cut(s)	761
SatI	GCNGC	4 cut(s)	182, 390, 850, 1123
Sau3AI	GATC	8 cut(s)	127, 211, 336, 449, 691, 706, 1062, 1067
Sau96I	GGNCC	1 cut(s)	80
ScaI	AGTACT	1 cut(s)	796
SchI	GAGTC	2 cut(s)	859, 1207
SduI	GDGCHC	1 cut(s)	780
SfaNI	GCATC	3 cut(s)	31, 300, 861
SinI	GGWCC	1 cut(s)	80
SmiMI	CAYNNNNRTG	2 cut(s)	1221, 1271
SmlI	CTYRAG	1 cut(s)	316
SmoI	CTYRAG	1 cut(s)	316
SsiI	CCGC	4 cut(s)	44, 262, 389, 674
SspI	AATATT	1 cut(s)	520
SspMI	CTAG	2 cut(s)	696, 1148
SstI	GAGCTC	1 cut(s)	780
StyI	CCWWGG	1 cut(s)	406
TaaI	ACNGT	2 cut(s)	149, 682
TaiI	ACGT	4 cut(s)	415, 598, 632, 1204
TatI	WGTACW	3 cut(s)	634, 794, 1158
TauI	GCSGC	1 cut(s)	392
TfiI	GAWTC	1 cut(s)	1281
Tru1I	TTAA	1 cut(s)	761
Tru9I	TTAA	1 cut(s)	761
TscAI	CASTG	4 cut(s)	364, 472, 751, 820
TseI	GCWGC	3 cut(s)	181, 849, 1122
TspRI	CASTG	4 cut(s)	364, 472, 751, 820
VpaK11BI	GGWCC	1 cut(s)	80
VspI	ATTAAT	1 cut(s)	761
XagI	CCTNNNNNAGG	1 cut(s)	699
XapI	RAATTY	3 cut(s)	269, 1016, 1239
XmiI	GTMKAC	1 cut(s)	1137
XmnI	GAANNNNTTC	1 cut(s)	96
XspI	CTAG	2 cut(s)	696, 1148
ZraI	GACGTC	1 cut(s)	413
ZrmI	AGTACT	1 cut(s)	796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.