Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0016958

Physical Location & Seq

Genomic Coordinates Reverse (-)

77126122 .. 77127883

Gene Structure 1762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG541800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCCTACCAGATGAAGCGTGTTGGAGAGGTTCAAGATGACCGCGTGAAATTTGAAATTAGCACAATTGCTTTTTGGGAGGGAATTGAGATGCACTTGAGTTCTGGATATGATAAGGCCACTGGCTTTGGTGGATTGAAGCTCACTTCTGCGGCTATGGGAGCCAACCTTGGACGTCTTGATGGGATTTGCATGACTTTCTTGAAACCCAGATCAGTCAAGGCTCACGCTGCTTCTGGTATGGTGAAGCGCATTCATGAATACAAGAGACAACTTATGAATATTTTGGGAATTGTTTACCGGTACAAGAAAATGAAAGAAATGAGTGCTTCACAAAGGAAAACAAAGTTTGTTCCACATGTTTGTATGTTCGGAGGAAAAGCATTTGCAACGTATGTACAAGCCAAAAGAATTGTGAAGTTTATCACAGATGTCGCGGAGACTGTAAATCATGATCCTAGTATAGGTGATCTACTGAAGGTTATCTTCGTACCTGATTATAATGTCAGTGTTGCTGAATTATTAATTCCTGCGAGTGAGCTCTCACAGCACATCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004645 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005977 GO:0005980 GO:0006073 GO:0006091 GO:0006112 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0008184 GO:0009056 GO:0009057 GO:0009251 GO:0009266 GO:0009414 GO:0009415 GO:0009501 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009987 GO:0010035 GO:0015980 GO:0016052 GO:0016740 GO:0016757 GO:0016758 GO:0019842 GO:0030170 GO:0036094 GO:0042221 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0050662 GO:0050896 GO:0055114 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 ko02026 ko04217 ko04910 ko04922 ko04931 map00500 map01100 map01110 map02026 map04217 map04910 map04922 map04931

Pfam Domains

Protein Families

Phosphorylase

Protein Analysis

186

Amino Acids

20.86

Weight (kDa)

9.64

Isoelectric Point (pI)

41.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phosphorylase	PF00343	81 - 185	2.4e-40	Carbohydrate phosphorylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0016958)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g06180 pycom17g05650 pycom17g05660
rosa_chinensis	RchiOBHm_Chr1g0375781
rosa_multiflora	Rmu_co8392471.1_g000001 Rmu_sc0000247.1_g000034
rosa_roxburghii	Rroxscaffold_1G00031980
rosa_samantha	Rh2BG532800 Rh2BG532900 Rh2DG541700 Rh2DG541800 Rh3DG289000 Rh4BG206500
rosa_wichuraiana	Rw3G015630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	501
AatII	GACGTC	1 cut(s)	178
AccII	CGCG	2 cut(s)	45, 437
AciI	CCGC	3 cut(s)	43, 152, 437
AclWI	GGATC	1 cut(s)	449
AcsI	RAATTY	1 cut(s)	50
AcuI	CTGAAG	1 cut(s)	497
AcyI	GRCGYC	1 cut(s)	175
AfaI	GTAC	3 cut(s)	305, 399, 492
AfiI	CCNNNNNNNGG	1 cut(s)	464
AflIII	ACRYGT	1 cut(s)	358
AgeI	ACCGGT	1 cut(s)	300
AgsI	TTSAA	4 cut(s)	35, 56, 139, 205
AluBI	AGCT	2 cut(s)	142, 541
AluI	AGCT	2 cut(s)	142, 541
Alw21I	GWGCWC	1 cut(s)	543
Alw26I	GTCTC	2 cut(s)	262, 434
AlwI	GGATC	1 cut(s)	449
AoxI	GGCC	2 cut(s)	3, 117
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	50
AseI	ATTAAT	1 cut(s)	524
AsiGI	ACCGGT	1 cut(s)	300
AspLEI	GCGC	1 cut(s)	252
AsuHPI	GGTGA	2 cut(s)	256, 479
BanII	GRGCYC	1 cut(s)	543
Bbv12I	GWGCWC	1 cut(s)	543
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	1 cut(s)	176
BcoDI	GTCTC	2 cut(s)	262, 434
BfaI	CTAG	1 cut(s)	459
BisI	GCNGC	2 cut(s)	153, 231
BlsI	GCNGC	2 cut(s)	154, 232
BmiI	GGNNCC	1 cut(s)	163
BmsI	GCATC	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	118
BsaHI	GRCGYC	1 cut(s)	175
BsaJI	CCNNGG	1 cut(s)	169
BsaWI	WCCGGW	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	1 cut(s)	464
Bse118I	RCCGGY	1 cut(s)	300
Bse1I	ACTGG	1 cut(s)	127
BseDI	CCNNGG	1 cut(s)	169
BseLI	CCNNNNNNNGG	1 cut(s)	464
BseNI	ACTGG	1 cut(s)	127
BseXI	GCAGC	1 cut(s)	217
Bsh1236I	CGCG	2 cut(s)	45, 437
BshFI	GGCC	2 cut(s)	5, 119
BshTI	ACCGGT	1 cut(s)	300
BsiHKAI	GWGCWC	1 cut(s)	543
BsiSI	CCGG	1 cut(s)	301
BslI	CCNNNNNNNGG	1 cut(s)	464
BsmAI	GTCTC	2 cut(s)	262, 434
BsmI	GAATGC	1 cut(s)	252
BsnI	GGCC	2 cut(s)	5, 119
Bsp1286I	GDGCHC	1 cut(s)	543
Bsp1407I	TGTACA	1 cut(s)	397
Bsp143I	GATC	3 cut(s)	212, 454, 469
BspACI	CCGC	3 cut(s)	43, 152, 437
BspANI	GGCC	2 cut(s)	5, 119
BspFNI	CGCG	2 cut(s)	45, 437
BspHI	TCATGA	2 cut(s)	256, 451
BspLI	GGNNCC	1 cut(s)	163
BspPI	GGATC	1 cut(s)	449
BsrFI	RCCGGY	1 cut(s)	300
BsrGI	TGTACA	1 cut(s)	397
BsrI	ACTGG	1 cut(s)	127
BssAI	RCCGGY	1 cut(s)	300
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	3 cut(s)	212, 454, 469
BssNI	GRCGYC	1 cut(s)	175
BssT1I	CCWWGG	1 cut(s)	169
Bst4CI	ACNGT	1 cut(s)	445
BstACI	GRCGYC	1 cut(s)	175
BstAUI	TGTACA	1 cut(s)	397
BstENI	CCTNNNNNAGG	1 cut(s)	462
BstFNI	CGCG	2 cut(s)	45, 437
BstHHI	GCGC	1 cut(s)	252
BstKTI	GATC	3 cut(s)	215, 457, 472
BstMAI	GTCTC	2 cut(s)	262, 434
BstMBI	GATC	3 cut(s)	212, 454, 469
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 230, 547
BstNSI	RCATGY	1 cut(s)	362
BstUI	CGCG	2 cut(s)	45, 437
BstV1I	GCAGC	1 cut(s)	217
BsuRI	GGCC	2 cut(s)	5, 119
BtsIMutI	CAGTG	2 cut(s)	120, 514
CciI	TCATGA	2 cut(s)	256, 451
CfoI	GCGC	1 cut(s)	252
Cfr10I	RCCGGY	1 cut(s)	300
Csp6I	GTAC	3 cut(s)	304, 398, 491
CspAI	ACCGGT	1 cut(s)	300
CspCI	CAANNNNNGTGG	2 cut(s)	109, 144
CviAII	CATG	4 cut(s)	193, 257, 359, 452
CviJI	RGCY	9 cut(s)	5, 119, 126, 142, 155, 164, 224, 404, 541
CviKI_1	RGCY	9 cut(s)	5, 119, 126, 142, 155, 164, 224, 404, 541
CviQI	GTAC	3 cut(s)	304, 398, 491
DpnI	GATC	3 cut(s)	214, 456, 471
DpnII	GATC	3 cut(s)	212, 454, 469
Ecl136II	GAGCTC	1 cut(s)	541
Eco130I	CCWWGG	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	543
Eco53kI	GAGCTC	1 cut(s)	541
Eco57I	CTGAAG	1 cut(s)	497
EcoICRI	GAGCTC	1 cut(s)	541
EcoNI	CCTNNNNNAGG	1 cut(s)	462
EcoT14I	CCWWGG	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	543
ErhI	CCWWGG	1 cut(s)	169
FaeI	CATG	4 cut(s)	196, 260, 362, 455
FalI	AAGNNNNNCTT	2 cut(s)	470, 502
FatI	CATG	4 cut(s)	192, 256, 358, 451
Fnu4HI	GCNGC	2 cut(s)	153, 231
FriOI	GRGCYC	1 cut(s)	543
Fsp4HI	GCNGC	2 cut(s)	153, 231
FspBI	CTAG	1 cut(s)	459
GlaI	GCGC	1 cut(s)	251
GluI	GCNGC	2 cut(s)	153, 231
HaeIII	GGCC	2 cut(s)	5, 119
HapII	CCGG	1 cut(s)	301
HhaI	GCGC	1 cut(s)	252
Hin1I	GRCGYC	1 cut(s)	175
Hin1II	CATG	4 cut(s)	196, 260, 362, 455
Hin6I	GCGC	1 cut(s)	250
HinP1I	GCGC	1 cut(s)	250
HpaII	CCGG	1 cut(s)	301
HphI	GGTGA	2 cut(s)	256, 479
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	1 cut(s)	374
Hpy188III	TCNNGA	6 cut(s)	35, 105, 179, 202, 257, 452
Hpy8I	GTNNAC	1 cut(s)	298
HpyAV	CCTTC	1 cut(s)	472
HpyCH4III	ACNGT	1 cut(s)	445
HpyCH4IV	ACGT	2 cut(s)	175, 392
HpyCH4V	TGCA	3 cut(s)	94, 192, 389
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 230, 547
HpySE526I	ACGT	2 cut(s)	175, 392
Hsp92I	GRCGYC	1 cut(s)	175
Hsp92II	CATG	4 cut(s)	196, 260, 362, 455
HspAI	GCGC	1 cut(s)	250
Kzo9I	GATC	3 cut(s)	212, 454, 469
LmnI	GCTCC	1 cut(s)	161
LpnPI	CCDG	9 cut(s)	23, 90, 108, 222, 223, 314, 507, 541, 543
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	1 cut(s)	459
MaeII	ACGT	2 cut(s)	175, 392
MalI	GATC	3 cut(s)	214, 456, 471
MboI	GATC	3 cut(s)	212, 454, 469
MboII	GAAGA	1 cut(s)	478
MfeI	CAATTG	1 cut(s)	66
MhlI	GDGCHC	1 cut(s)	543
MluCI	AATT	8 cut(s)	50, 57, 66, 84, 291, 411, 518, 525
MmeI	TCCRAC	1 cut(s)	4
MnlI	CCTC	3 cut(s)	22, 73, 368
MseI	TTAA	1 cut(s)	524
MspI	CCGG	1 cut(s)	301
MunI	CAATTG	1 cut(s)	66
Mva1269I	GAATGC	1 cut(s)	252
MvnI	CGCG	2 cut(s)	45, 437
MwoI	GCNNNNNNNGC	3 cut(s)	161, 230, 547
NdeII	GATC	3 cut(s)	212, 454, 469
NlaIII	CATG	4 cut(s)	196, 260, 362, 455
NlaIV	GGNNCC	1 cut(s)	163
NspI	RCATGY	1 cut(s)	362
PagI	TCATGA	2 cut(s)	256, 451
PciI	ACATGT	1 cut(s)	358
PctI	GAATGC	1 cut(s)	252
PinAI	ACCGGT	1 cut(s)	300
PkrI	GCNGC	2 cut(s)	154, 232
PscI	ACATGT	1 cut(s)	358
PshBI	ATTAAT	1 cut(s)	524
PsiI	TTATAA	1 cut(s)	501
Psp124BI	GAGCTC	1 cut(s)	543
PspN4I	GGNNCC	1 cut(s)	163
RsaI	GTAC	3 cut(s)	305, 399, 492
RsaNI	GTAC	3 cut(s)	304, 398, 491
SacI	GAGCTC	1 cut(s)	543
SaqAI	TTAA	1 cut(s)	524
SatI	GCNGC	2 cut(s)	153, 231
Sau3AI	GATC	3 cut(s)	212, 454, 469
SduI	GDGCHC	1 cut(s)	543
SfaNI	GCATC	1 cut(s)	81
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
Sse9I	AATT	8 cut(s)	50, 57, 66, 84, 291, 411, 518, 525
SsiI	CCGC	3 cut(s)	43, 152, 437
SspI	AATATT	1 cut(s)	283
SspMI	CTAG	1 cut(s)	459
SstI	GAGCTC	1 cut(s)	543
StyI	CCWWGG	1 cut(s)	169
TaaI	ACNGT	1 cut(s)	445
TaiI	ACGT	2 cut(s)	178, 395
TasI	AATT	8 cut(s)	50, 57, 66, 84, 291, 411, 518, 525
TatI	WGTACW	1 cut(s)	397
TauI	GCSGC	1 cut(s)	155
Tru1I	TTAA	1 cut(s)	524
Tru9I	TTAA	1 cut(s)	524
TscAI	CASTG	2 cut(s)	127, 514
TseI	GCWGC	1 cut(s)	230
TspDTI	ATGAA	5 cut(s)	29, 245, 273, 293, 329
TspRI	CASTG	2 cut(s)	127, 514
VspI	ATTAAT	1 cut(s)	524
XagI	CCTNNNNNAGG	1 cut(s)	462
XapI	RAATTY	1 cut(s)	50
XceI	RCATGY	1 cut(s)	362
XspI	CTAG	1 cut(s)	459
ZraI	GACGTC	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.