Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0016958

Physical Location & Seq

Genomic Coordinates Reverse (-)

29831728 .. 29834651

Gene Structure 2924 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG289000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGAATATTTTGGGAATTGTTTACCGGTACAAGAAAATGAAAGAAATGAGTGCTTCACAAAGGAAAACAAAGTTTGTTCCACGTGTTTGTATGTTCGGAGGAAAAGCATTTGCAACGTATGTACAAGCCAAAAGAATTGTGAAGTTTATCACAGATGTCGCGGAGACTGTAAATCATGATCCTAGTATAGGTGATCTACTGAAGGTTATCTTCGTACCTGATTATAATGTCAGTGTTGCTGAATTATTAATTCCTGCGAGTGAGCTCTCACAGCACATCAGTACTGCTGGCATGGAGGCCAGTGGCACCAGCAACATGAAGTTTGCAATGAATGGCTGCATCCTAATTGGGACTCTGGATGGAGCCAATGTTGAAATAAGAGAGGAGGTTGGAGCAGATATCTTTTTCCTCTTTGGTGCTGAAGCTCATGAGATTGCTGGGCTGAGAAAAGAACGAGCTGAAGGGAAGTTTGTTCCAGACCCCCGTTTTGAAGAAGTCAAGGAATTTGTCAGAAGTGGCGTTTTTGAGTCGTACAATTATGATGACCTGATCGGATCCAGAACAAGATATGTTCGGGTACTTGGTGCATTTTACTTGCGTATCACAGGCAGCGATACTGATGTCTACCAGTACCTAGAGCCTCTGTACAATGACTATCGGAAGTTGAGAAGTAAATTGGCTGATGGACGTTTCTCGTTGACTCATGTGGATGAGCTTATTGATGAACTTCTGACAAAGGACTACTCATGCGACATTGCCATGCCACGAATCAAGAAAAGGTCTCTAACAGGATCTATTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004645 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005977 GO:0005980 GO:0006073 GO:0006091 GO:0006112 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0008184 GO:0009056 GO:0009057 GO:0009251 GO:0009266 GO:0009414 GO:0009415 GO:0009501 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009987 GO:0010035 GO:0015980 GO:0016052 GO:0016740 GO:0016757 GO:0016758 GO:0019842 GO:0030170 GO:0036094 GO:0042221 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0050662 GO:0050896 GO:0055114 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 ko02026 ko04217 ko04910 ko04922 ko04931 map00500 map01100 map01110 map02026 map04217 map04910 map04922 map04931

Pfam Domains

Protein Families

Phosphorylase

Protein Analysis

267

Amino Acids

30.14

Weight (kDa)

6.47

Isoelectric Point (pI)

33.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phosphorylase	PF00343	1 - 182	8.2e-68	Carbohydrate phosphorylase
PRP38	PF03371	185 - 261	4.4e-25	PRP38 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0016958)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g06180 pycom17g05650 pycom17g05660
rosa_chinensis	RchiOBHm_Chr1g0375781
rosa_multiflora	Rmu_co8392471.1_g000001 Rmu_sc0000247.1_g000034
rosa_roxburghii	Rroxscaffold_1G00031980
rosa_samantha	Rh2BG532800 Rh2BG532900 Rh2DG541700 Rh2DG541800 Rh3DG289000 Rh4BG206500
rosa_wichuraiana	Rw3G015630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	225
AccB1I	GGYRCC	1 cut(s)	305
AccI	GTMKAC	1 cut(s)	624
AccII	CGCG	1 cut(s)	161
AciI	CCGC	1 cut(s)	161
AclWI	GGATC	4 cut(s)	173, 549, 562, 799
AcsI	RAATTY	1 cut(s)	503
AcuI	CTGAAG	3 cut(s)	221, 441, 480
AcvI	CACGTG	1 cut(s)	83
AfaI	GTAC	8 cut(s)	29, 123, 216, 283, 533, 579, 632, 647
AfiI	CCNNNNNNNGG	1 cut(s)	188
AflIII	ACRYGT	1 cut(s)	82
AgeI	ACCGGT	1 cut(s)	24
AgsI	TTSAA	2 cut(s)	374, 491
AluBI	AGCT	4 cut(s)	265, 425, 458, 715
AluI	AGCT	4 cut(s)	265, 425, 458, 715
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	2 cut(s)	158, 786
AlwI	GGATC	4 cut(s)	173, 549, 562, 799
AoxI	GGCC	1 cut(s)	297
ApeKI	GCWGC	2 cut(s)	336, 609
ApoI	RAATTY	1 cut(s)	503
ArsI	GACNNNNNNTTYG	2 cut(s)	470, 502
AseI	ATTAAT	1 cut(s)	248
AsiGI	ACCGGT	1 cut(s)	24
AsuHPI	GGTGA	1 cut(s)	203
BaeI	ACNNNNGTAYC	4 cut(s)	583, 606, 616, 639
BamHI	GGATCC	1 cut(s)	554
BanI	GGYRCC	1 cut(s)	305
BanII	GRGCYC	1 cut(s)	267
BbrPI	CACGTG	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	2 cut(s)	323, 621
BccI	CCATC	2 cut(s)	353, 677
BcoDI	GTCTC	2 cut(s)	158, 786
BfaI	CTAG	2 cut(s)	183, 635
BisI	GCNGC	2 cut(s)	337, 610
BlsI	GCNGC	2 cut(s)	338, 611
BmcAI	AGTACT	1 cut(s)	283
BmiI	GGNNCC	3 cut(s)	307, 364, 556
BmsI	GCATC	1 cut(s)	348
BsaAI	YACGTR	1 cut(s)	83
BsaI	GGTCTC	1 cut(s)	786
BsaWI	WCCGGW	1 cut(s)	24
BsaXI	ACNNNNNCTCC	2 cut(s)	354, 384
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse118I	RCCGGY	1 cut(s)	24
Bse1I	ACTGG	2 cut(s)	300, 628
Bse3DI	GCAATG	2 cut(s)	333, 753
BseGI	GGATG	3 cut(s)	339, 364, 715
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMI	GCAATG	2 cut(s)	333, 753
BseMII	CTCAG	1 cut(s)	434
BseNI	ACTGG	2 cut(s)	300, 628
BseRI	GAGGAG	1 cut(s)	398
BseXI	GCAGC	2 cut(s)	323, 621
BseYI	CCCAGC	1 cut(s)	437
Bsh1236I	CGCG	1 cut(s)	161
BshFI	GGCC	1 cut(s)	299
BshNI	GGYRCC	1 cut(s)	305
BshTI	ACCGGT	1 cut(s)	24
BsiHKAI	GWGCWC	1 cut(s)	267
BsiSI	CCGG	1 cut(s)	25
BslFI	GGGAC	1 cut(s)	364
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmAI	GTCTC	2 cut(s)	158, 786
BsmFI	GGGAC	1 cut(s)	364
BsnI	GGCC	1 cut(s)	299
Bso31I	GGTCTC	1 cut(s)	786
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp1407I	TGTACA	2 cut(s)	121, 645
Bsp143I	GATC	5 cut(s)	178, 193, 549, 554, 791
BspACI	CCGC	1 cut(s)	161
BspANI	GGCC	1 cut(s)	299
BspCNI	CTCAG	1 cut(s)	435
BspFNI	CGCG	1 cut(s)	161
BspHI	TCATGA	2 cut(s)	175, 427
BspLI	GGNNCC	3 cut(s)	307, 364, 556
BspPI	GGATC	4 cut(s)	173, 549, 562, 799
BspT107I	GGYRCC	1 cut(s)	305
BspTNI	GGTCTC	1 cut(s)	786
BsrDI	GCAATG	2 cut(s)	333, 753
BsrFI	RCCGGY	1 cut(s)	24
BsrGI	TGTACA	2 cut(s)	121, 645
BsrI	ACTGG	2 cut(s)	300, 628
BssAI	RCCGGY	1 cut(s)	24
BssMI	GATC	5 cut(s)	178, 193, 549, 554, 791
Bst4CI	ACNGT	1 cut(s)	169
BstAUI	TGTACA	2 cut(s)	121, 645
BstBAI	YACGTR	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	289
BstDEI	CTNAG	1 cut(s)	443
BstENI	CCTNNNNNAGG	1 cut(s)	186
BstF5I	GGATG	3 cut(s)	339, 364, 715
BstFNI	CGCG	1 cut(s)	161
BstKTI	GATC	5 cut(s)	181, 196, 552, 557, 794
BstMAI	GTCTC	2 cut(s)	158, 786
BstMBI	GATC	5 cut(s)	178, 193, 549, 554, 791
BstMWI	GCNNNNNNNGC	1 cut(s)	271
BstUI	CGCG	1 cut(s)	161
BstV1I	GCAGC	2 cut(s)	323, 621
BstX2I	RGATCY	2 cut(s)	554, 791
BstYI	RGATCY	2 cut(s)	554, 791
BsuRI	GGCC	1 cut(s)	299
BtsCI	GGATG	3 cut(s)	339, 364, 715
BtsIMutI	CAGTG	2 cut(s)	238, 307
Cac8I	GCNNGC	1 cut(s)	289
CciI	TCATGA	2 cut(s)	175, 427
Cfr10I	RCCGGY	1 cut(s)	24
Csp6I	GTAC	8 cut(s)	28, 122, 215, 282, 532, 578, 631, 646
CspAI	ACCGGT	1 cut(s)	24
CviAII	CATG	7 cut(s)	176, 292, 316, 428, 704, 747, 760
CviQI	GTAC	8 cut(s)	28, 122, 215, 282, 532, 578, 631, 646
DdeI	CTNAG	1 cut(s)	443
DpnI	GATC	5 cut(s)	180, 195, 551, 556, 793
DpnII	GATC	5 cut(s)	178, 193, 549, 554, 791
Ecl136II	GAGCTC	1 cut(s)	265
Eco24I	GRGCYC	1 cut(s)	267
Eco31I	GGTCTC	1 cut(s)	786
Eco32I	GATATC	1 cut(s)	400
Eco53kI	GAGCTC	1 cut(s)	265
Eco57I	CTGAAG	3 cut(s)	221, 441, 480
Eco72I	CACGTG	1 cut(s)	83
EcoICRI	GAGCTC	1 cut(s)	265
EcoNI	CCTNNNNNAGG	1 cut(s)	186
EcoRV	GATATC	1 cut(s)	400
EcoT38I	GRGCYC	1 cut(s)	267
FaeI	CATG	7 cut(s)	179, 295, 319, 431, 707, 750, 763
FalI	AAGNNNNNCTT	2 cut(s)	194, 226
FaqI	GGGAC	1 cut(s)	364
FatI	CATG	7 cut(s)	175, 291, 315, 427, 703, 746, 759
FblI	GTMKAC	1 cut(s)	624
Fnu4HI	GCNGC	2 cut(s)	337, 610
FokI	GGATG	3 cut(s)	326, 371, 722
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	2 cut(s)	337, 610
FspBI	CTAG	2 cut(s)	183, 635
GluI	GCNGC	2 cut(s)	337, 610
GsaI	CCCAGC	1 cut(s)	441
HaeIII	GGCC	1 cut(s)	299
HapII	CCGG	1 cut(s)	25
Hin1II	CATG	7 cut(s)	179, 295, 319, 431, 707, 750, 763
HincII	GTYRAC	1 cut(s)	699
HindII	GTYRAC	1 cut(s)	699
HinfI	GANTC	4 cut(s)	352, 527, 700, 768
HpaII	CCGG	1 cut(s)	25
HphI	GGTGA	1 cut(s)	203
Hpy166II	GTNNAC	3 cut(s)	22, 625, 699
Hpy188I	TCNGA	5 cut(s)	98, 512, 554, 660, 732
Hpy188III	TCNNGA	6 cut(s)	176, 356, 428, 476, 558, 772
Hpy8I	GTNNAC	3 cut(s)	22, 625, 699
HpyAV	CCTTC	2 cut(s)	196, 455
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4IV	ACGT	3 cut(s)	82, 116, 688
HpyCH4V	TGCA	4 cut(s)	113, 326, 339, 587
HpyF10VI	GCNNNNNNNGC	1 cut(s)	271
HpyF3I	CTNAG	1 cut(s)	443
HpySE526I	ACGT	3 cut(s)	82, 116, 688
Hsp92II	CATG	7 cut(s)	179, 295, 319, 431, 707, 750, 763
Kzo9I	GATC	5 cut(s)	178, 193, 549, 554, 791
LmnI	GCTCC	2 cut(s)	362, 392
Lsp1109I	GCAGC	2 cut(s)	323, 621
LweI	GCATC	1 cut(s)	348
MaeI	CTAG	2 cut(s)	183, 635
MaeII	ACGT	3 cut(s)	82, 116, 688
MalI	GATC	5 cut(s)	180, 195, 551, 556, 793
MboI	GATC	5 cut(s)	178, 193, 549, 554, 791
MboII	GAAGA	2 cut(s)	202, 503
MflI	RGATCY	2 cut(s)	554, 791
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	8 cut(s)	15, 135, 242, 249, 345, 503, 535, 674
MlyI	GAGTC	3 cut(s)	346, 536, 694
MmeI	TCCRAC	1 cut(s)	370
MnlI	CCTC	6 cut(s)	92, 289, 376, 379, 419, 651
MseI	TTAA	1 cut(s)	248
MslI	CAYNNNNRTG	2 cut(s)	708, 758
MspI	CCGG	1 cut(s)	25
MvnI	CGCG	1 cut(s)	161
MwoI	GCNNNNNNNGC	1 cut(s)	271
NdeII	GATC	5 cut(s)	178, 193, 549, 554, 791
NlaIII	CATG	7 cut(s)	179, 295, 319, 431, 707, 750, 763
NlaIV	GGNNCC	3 cut(s)	307, 364, 556
PagI	TCATGA	2 cut(s)	175, 427
PfeI	GAWTC	1 cut(s)	768
PinAI	ACCGGT	1 cut(s)	24
PkrI	GCNGC	2 cut(s)	338, 611
PleI	GAGTC	3 cut(s)	346, 535, 694
PmaCI	CACGTG	1 cut(s)	83
PmlI	CACGTG	1 cut(s)	83
PpsI	GAGTC	3 cut(s)	346, 535, 694
Ppu21I	YACGTR	1 cut(s)	83
PshBI	ATTAAT	1 cut(s)	248
PsiI	TTATAA	1 cut(s)	225
Psp124BI	GAGCTC	1 cut(s)	267
PspCI	CACGTG	1 cut(s)	83
PspFI	CCCAGC	1 cut(s)	437
PspN4I	GGNNCC	3 cut(s)	307, 364, 556
PsuI	RGATCY	2 cut(s)	554, 791
RsaI	GTAC	8 cut(s)	29, 123, 216, 283, 533, 579, 632, 647
RsaNI	GTAC	8 cut(s)	28, 122, 215, 282, 532, 578, 631, 646
RseI	CAYNNNNRTG	2 cut(s)	708, 758
SacI	GAGCTC	1 cut(s)	267
SaqAI	TTAA	1 cut(s)	248
SatI	GCNGC	2 cut(s)	337, 610
Sau3AI	GATC	5 cut(s)	178, 193, 549, 554, 791
ScaI	AGTACT	1 cut(s)	283
SchI	GAGTC	3 cut(s)	346, 536, 694
SduI	GDGCHC	1 cut(s)	267
SfaNI	GCATC	1 cut(s)	348
SmiMI	CAYNNNNRTG	2 cut(s)	708, 758
Sse9I	AATT	8 cut(s)	15, 135, 242, 249, 345, 503, 535, 674
SsiI	CCGC	1 cut(s)	161
SspI	AATATT	1 cut(s)	7
SspMI	CTAG	2 cut(s)	183, 635
SstI	GAGCTC	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	169
TaiI	ACGT	3 cut(s)	85, 119, 691
TasI	AATT	8 cut(s)	15, 135, 242, 249, 345, 503, 535, 674
TatI	WGTACW	3 cut(s)	121, 281, 645
TfiI	GAWTC	1 cut(s)	768
Tru1I	TTAA	1 cut(s)	248
Tru9I	TTAA	1 cut(s)	248
TscAI	CASTG	2 cut(s)	238, 307
TseI	GCWGC	2 cut(s)	336, 609
TspDTI	ATGAA	5 cut(s)	17, 53, 332, 344, 738
TspRI	CASTG	2 cut(s)	238, 307
VspI	ATTAAT	1 cut(s)	248
XagI	CCTNNNNNAGG	1 cut(s)	186
XapI	RAATTY	1 cut(s)	503
XmiI	GTMKAC	1 cut(s)	624
XspI	CTAG	2 cut(s)	183, 635
ZrmI	AGTACT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.