Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0016958

Physical Location & Seq

Genomic Coordinates Reverse (-)

77123887 .. 77125951

Gene Structure 2065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG541700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGAGGCCAGTGGCACCAGCAACATGAAGTTTGCAATGAATGGCTGCATCCTAATTGGGACTCTGGATGGAGCCAATGTTGAAATAAGAGAGGAGGTTCGAGCAGATAGCTTTTTCCTCTTTGGTGCTGAAGCTCATGAGATTGCTGGGCTGAGAAAAGAACGAGCTGAAGGGAAGTTTGTTCCAGACCCCCGTTTTGAAGAAGTCAAGGAATTTGTCAGAAGTGGCGTTTTTGGGTCGTACAATTATGATGACTTGATCGGATCCAGAACAAGATATGTTCGGGTACTTGGTGCATTTTACTTGCGTATCACAGGCAGCGATACTGATGTCTACCAGTACCTAGAGCCTCTGTACAATGAGTATCGGAAGTTGAGAAGTAAATTGGCTGATGGACGTTTCTCGTTGACTCATGTGGATGAGCTTATTGATGAACTTCTAACAAAGGACTACTCATGCGACATTGCCATGCCACGAATCAAGAAAAGGGTCCCGGAAGGCCATAAATTCCGCGTTATGGCATGCCTGCGCCGGCCCCCTTGTTTGTTTGCCTCAAGTGGGGAGTCTTGCTTATTACTTCCCTCAGGCCATAGTGCACAGGATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004645 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005977 GO:0005980 GO:0006073 GO:0006091 GO:0006112 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0008184 GO:0009056 GO:0009057 GO:0009251 GO:0009266 GO:0009414 GO:0009415 GO:0009501 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009987 GO:0010035 GO:0015980 GO:0016052 GO:0016740 GO:0016757 GO:0016758 GO:0019842 GO:0030170 GO:0036094 GO:0042221 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0050662 GO:0050896 GO:0055114 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 ko02026 ko04217 ko04910 ko04922 ko04931 map00500 map01100 map01110 map02026 map04217 map04910 map04922 map04931

Pfam Domains

Protein Families

Phosphorylase

Protein Analysis

202

Amino Acids

22.82

Weight (kDa)

6.13

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phosphorylase	PF00343	1 - 84	4.2e-24	Carbohydrate phosphorylase
PRP38	PF03371	88 - 164	2.2e-24	PRP38 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016958)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g06180 pycom17g05650 pycom17g05660
rosa_chinensis	RchiOBHm_Chr1g0375781
rosa_multiflora	Rmu_co8392471.1_g000001 Rmu_sc0000247.1_g000034
rosa_roxburghii	Rroxscaffold_1G00031980
rosa_samantha	Rh2BG532800 Rh2BG532900 Rh2DG541700 Rh2DG541800 Rh3DG289000 Rh4BG206500
rosa_wichuraiana	Rw3G015630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	14
AccI	GTMKAC	1 cut(s)	333
AccII	CGCG	1 cut(s)	513
AciI	CCGC	1 cut(s)	511
AclWI	GGATC	2 cut(s)	258, 271
AcsI	RAATTY	2 cut(s)	212, 506
AcuI	CTGAAG	2 cut(s)	150, 189
AfaI	GTAC	4 cut(s)	242, 288, 341, 356
AfiI	CCNNNNNNNGG	2 cut(s)	517, 558
AgsI	TTSAA	2 cut(s)	83, 200
AluBI	AGCT	4 cut(s)	111, 134, 167, 424
AluI	AGCT	4 cut(s)	111, 134, 167, 424
Alw21I	GWGCWC	1 cut(s)	598
Alw44I	GTGCAC	1 cut(s)	594
AlwI	GGATC	2 cut(s)	258, 271
AoxI	GGCC	4 cut(s)	6, 499, 533, 586
ApaLI	GTGCAC	1 cut(s)	594
ApeKI	GCWGC	2 cut(s)	45, 318
ApoI	RAATTY	2 cut(s)	212, 506
ArsI	GACNNNNNNTTYG	2 cut(s)	179, 211
AspLEI	GCGC	1 cut(s)	531
AspS9I	GGNCC	2 cut(s)	490, 534
AsuC2I	CCSGG	1 cut(s)	494
AvaII	GGWCC	1 cut(s)	490
AxyI	CCTNAGG	1 cut(s)	583
BaeGI	GKGCMC	1 cut(s)	598
BaeI	ACNNNNGTAYC	4 cut(s)	292, 315, 325, 348
BamHI	GGATCC	1 cut(s)	263
BanI	GGYRCC	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	598
BbvI	GCAGC	2 cut(s)	32, 330
BccI	CCATC	2 cut(s)	62, 386
BcnI	CCSGG	1 cut(s)	494
BfaI	CTAG	1 cut(s)	344
BisI	GCNGC	2 cut(s)	46, 319
BlsI	GCNGC	2 cut(s)	47, 320
Bme1390I	CCNGG	1 cut(s)	494
Bme18I	GGWCC	1 cut(s)	490
BmgT120I	GGNCC	2 cut(s)	490, 534
BmiI	GGNNCC	6 cut(s)	16, 73, 265, 491, 492, 536
BmrFI	CCNGG	1 cut(s)	494
BmsI	GCATC	2 cut(s)	57, 592
BpuEI	CTTGAG	1 cut(s)	538
BpuMI	CCSGG	1 cut(s)	494
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bsc4I	CCNNNNNNNGG	2 cut(s)	517, 558
Bse118I	RCCGGY	1 cut(s)	531
Bse1I	ACTGG	2 cut(s)	9, 337
Bse21I	CCTNAGG	1 cut(s)	583
Bse3DI	GCAATG	2 cut(s)	42, 462
BseGI	GGATG	4 cut(s)	48, 73, 424, 607
BseLI	CCNNNNNNNGG	2 cut(s)	517, 558
BseMI	GCAATG	2 cut(s)	42, 462
BseMII	CTCAG	2 cut(s)	143, 597
BseNI	ACTGG	2 cut(s)	9, 337
BseRI	GAGGAG	1 cut(s)	107
BseSI	GKGCMC	1 cut(s)	598
BseXI	GCAGC	2 cut(s)	32, 330
BseYI	CCCAGC	1 cut(s)	146
Bsh1236I	CGCG	1 cut(s)	513
BshFI	GGCC	4 cut(s)	8, 501, 535, 588
BshNI	GGYRCC	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	598
BsiSI	CCGG	2 cut(s)	494, 532
BslFI	GGGAC	2 cut(s)	73, 476
BslI	CCNNNNNNNGG	2 cut(s)	517, 558
BsmFI	GGGAC	2 cut(s)	73, 476
BsnI	GGCC	4 cut(s)	8, 501, 535, 588
Bsp1286I	GDGCHC	1 cut(s)	598
Bsp1407I	TGTACA	1 cut(s)	354
Bsp143I	GATC	2 cut(s)	258, 263
BspACI	CCGC	1 cut(s)	511
BspANI	GGCC	4 cut(s)	8, 501, 535, 588
BspCNI	CTCAG	2 cut(s)	144, 596
BspFNI	CGCG	1 cut(s)	513
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	6 cut(s)	16, 73, 265, 491, 492, 536
BspPI	GGATC	2 cut(s)	258, 271
BspT107I	GGYRCC	1 cut(s)	14
BsrDI	GCAATG	2 cut(s)	42, 462
BsrFI	RCCGGY	1 cut(s)	531
BsrGI	TGTACA	1 cut(s)	354
BsrI	ACTGG	2 cut(s)	9, 337
BssAI	RCCGGY	1 cut(s)	531
BssMI	GATC	2 cut(s)	258, 263
BstAPI	GCANNNNNTGC	1 cut(s)	602
BstAUI	TGTACA	1 cut(s)	354
BstC8I	GCNNGC	3 cut(s)	523, 527, 533
BstDEI	CTNAG	2 cut(s)	152, 583
BstF5I	GGATG	4 cut(s)	48, 73, 424, 607
BstFNI	CGCG	1 cut(s)	513
BstHHI	GCGC	1 cut(s)	531
BstKTI	GATC	2 cut(s)	261, 266
BstMBI	GATC	2 cut(s)	258, 263
BstMWI	GCNNNNNNNGC	1 cut(s)	602
BstNSI	RCATGY	1 cut(s)	525
BstSCI	CCNGG	1 cut(s)	492
BstSLI	GKGCMC	1 cut(s)	598
BstUI	CGCG	1 cut(s)	513
BstV1I	GCAGC	2 cut(s)	32, 330
BstX2I	RGATCY	1 cut(s)	263
BstYI	RGATCY	1 cut(s)	263
Bsu36I	CCTNAGG	1 cut(s)	583
BsuRI	GGCC	4 cut(s)	8, 501, 535, 588
BtsCI	GGATG	4 cut(s)	48, 73, 424, 607
BtsIMutI	CAGTG	1 cut(s)	16
Cac8I	GCNNGC	3 cut(s)	523, 527, 533
CciI	TCATGA	1 cut(s)	136
CfoI	GCGC	1 cut(s)	531
Cfr10I	RCCGGY	1 cut(s)	531
Cfr13I	GGNCC	2 cut(s)	490, 534
Csp6I	GTAC	4 cut(s)	241, 287, 340, 355
CviAII	CATG	6 cut(s)	25, 137, 413, 456, 469, 522
CviQI	GTAC	4 cut(s)	241, 287, 340, 355
DdeI	CTNAG	2 cut(s)	152, 583
DpnI	GATC	2 cut(s)	260, 265
DpnII	GATC	2 cut(s)	258, 263
Eco47I	GGWCC	1 cut(s)	490
Eco57I	CTGAAG	2 cut(s)	150, 189
Eco81I	CCTNAGG	1 cut(s)	583
EcoO109I	RGGNCCY	1 cut(s)	490
FaeI	CATG	6 cut(s)	28, 140, 416, 459, 472, 525
FaqI	GGGAC	2 cut(s)	73, 476
FatI	CATG	6 cut(s)	24, 136, 412, 455, 468, 521
FblI	GTMKAC	1 cut(s)	333
Fnu4HI	GCNGC	2 cut(s)	46, 319
FokI	GGATG	3 cut(s)	35, 80, 431
Fsp4HI	GCNGC	2 cut(s)	46, 319
FspBI	CTAG	1 cut(s)	344
GlaI	GCGC	1 cut(s)	530
GluI	GCNGC	2 cut(s)	46, 319
GsaI	CCCAGC	1 cut(s)	150
HaeIII	GGCC	4 cut(s)	8, 501, 535, 588
HapII	CCGG	2 cut(s)	494, 532
HhaI	GCGC	1 cut(s)	531
Hin1II	CATG	6 cut(s)	28, 140, 416, 459, 472, 525
Hin6I	GCGC	1 cut(s)	529
HinP1I	GCGC	1 cut(s)	529
HincII	GTYRAC	1 cut(s)	408
HindII	GTYRAC	1 cut(s)	408
HinfI	GANTC	4 cut(s)	61, 409, 477, 563
HpaII	CCGG	2 cut(s)	494, 532
Hpy166II	GTNNAC	3 cut(s)	334, 408, 596
Hpy188I	TCNGA	3 cut(s)	221, 263, 369
Hpy188III	TCNNGA	5 cut(s)	65, 137, 185, 267, 481
Hpy8I	GTNNAC	3 cut(s)	334, 408, 596
HpyAV	CCTTC	2 cut(s)	164, 491
HpyCH4IV	ACGT	1 cut(s)	397
HpyCH4V	TGCA	4 cut(s)	35, 48, 296, 596
HpyF10VI	GCNNNNNNNGC	1 cut(s)	602
HpyF3I	CTNAG	2 cut(s)	152, 583
HpySE526I	ACGT	1 cut(s)	397
Hsp92II	CATG	6 cut(s)	28, 140, 416, 459, 472, 525
HspAI	GCGC	1 cut(s)	529
KflI	GGGWCCC	1 cut(s)	490
KroI	GCCGGC	1 cut(s)	531
KroNI	GCCGGC	1 cut(s)	533
Kzo9I	GATC	2 cut(s)	258, 263
LmnI	GCTCC	1 cut(s)	71
Lsp1109I	GCAGC	2 cut(s)	32, 330
LweI	GCATC	2 cut(s)	57, 592
MaeI	CTAG	1 cut(s)	344
MaeII	ACGT	1 cut(s)	397
MalI	GATC	2 cut(s)	260, 265
MboI	GATC	2 cut(s)	258, 263
MboII	GAAGA	1 cut(s)	212
MflI	RGATCY	1 cut(s)	263
MhlI	GDGCHC	1 cut(s)	598
MluCI	AATT	5 cut(s)	54, 212, 244, 383, 506
MlyI	GAGTC	3 cut(s)	55, 403, 572
MnlI	CCTC	6 cut(s)	85, 88, 128, 360, 562, 592
MroNI	GCCGGC	1 cut(s)	531
MslI	CAYNNNNRTG	2 cut(s)	417, 467
MspI	CCGG	2 cut(s)	494, 532
MspR9I	CCNGG	1 cut(s)	494
MvnI	CGCG	1 cut(s)	513
MwoI	GCNNNNNNNGC	1 cut(s)	602
NaeI	GCCGGC	1 cut(s)	533
NciI	CCSGG	1 cut(s)	494
NdeII	GATC	2 cut(s)	258, 263
NgoMIV	GCCGGC	1 cut(s)	531
NlaIII	CATG	6 cut(s)	28, 140, 416, 459, 472, 525
NlaIV	GGNNCC	6 cut(s)	16, 73, 265, 491, 492, 536
NspI	RCATGY	1 cut(s)	525
PaeI	GCATGC	1 cut(s)	525
PagI	TCATGA	1 cut(s)	136
PdiI	GCCGGC	1 cut(s)	533
PfeI	GAWTC	1 cut(s)	477
PfoI	TCCNGGA	1 cut(s)	492
PkrI	GCNGC	2 cut(s)	47, 320
PleI	GAGTC	3 cut(s)	55, 403, 571
PpsI	GAGTC	3 cut(s)	55, 403, 571
PpuMI	RGGWCCY	1 cut(s)	490
Psp5II	RGGWCCY	1 cut(s)	490
PspFI	CCCAGC	1 cut(s)	146
PspN4I	GGNNCC	6 cut(s)	16, 73, 265, 491, 492, 536
PspPI	GGNCC	2 cut(s)	490, 534
PspPPI	RGGWCCY	1 cut(s)	490
PsuI	RGATCY	1 cut(s)	263
RsaI	GTAC	4 cut(s)	242, 288, 341, 356
RsaNI	GTAC	4 cut(s)	241, 287, 340, 355
RseI	CAYNNNNRTG	2 cut(s)	417, 467
SatI	GCNGC	2 cut(s)	46, 319
Sau3AI	GATC	2 cut(s)	258, 263
Sau96I	GGNCC	2 cut(s)	490, 534
SchI	GAGTC	3 cut(s)	55, 403, 572
ScrFI	CCNGG	1 cut(s)	494
SduI	GDGCHC	1 cut(s)	598
SetI	ASST	7 cut(s)	99, 113, 136, 169, 345, 400, 426
SfaNI	GCATC	2 cut(s)	57, 592
SinI	GGWCC	1 cut(s)	490
SmiMI	CAYNNNNRTG	2 cut(s)	417, 467
SmlI	CTYRAG	1 cut(s)	553
SmoI	CTYRAG	1 cut(s)	553
SphI	GCATGC	1 cut(s)	525
Sse9I	AATT	5 cut(s)	54, 212, 244, 383, 506
SsiI	CCGC	1 cut(s)	511
SspMI	CTAG	1 cut(s)	344
StyD4I	CCNGG	1 cut(s)	492
TaiI	ACGT	1 cut(s)	400
TaqI	TCGA	1 cut(s)	100
TasI	AATT	5 cut(s)	54, 212, 244, 383, 506
TatI	WGTACW	1 cut(s)	354
TfiI	GAWTC	1 cut(s)	477
TscAI	CASTG	1 cut(s)	16
TseI	GCWGC	2 cut(s)	45, 318
TspDTI	ATGAA	3 cut(s)	41, 53, 447
TspRI	CASTG	1 cut(s)	16
VneI	GTGCAC	1 cut(s)	594
VpaK11BI	GGWCC	1 cut(s)	490
XapI	RAATTY	2 cut(s)	212, 506
XceI	RCATGY	1 cut(s)	525
XmiI	GTMKAC	1 cut(s)	333
XspI	CTAG	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.