Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0016958

Physical Location & Seq

Genomic Coordinates Reverse (-)

74200479 .. 74202224

Gene Structure 1746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG532800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGAGGCCAGTGGCACCAGCAACATGAAGTTTGCAATGAATGGCTGCATCCTAATTGGGACTCTGGATGGAGCCAATGTTGAAATAAGAGAGGAGGTTCGAGCAGATAGCTTTTTCCTCTTTGGTGCTGAAGCTCATGAGATTGCTGGGCTGAGAAAAGAACGAGCTGAAGGGAAGTTTGTTCCAGACCCCCGTTTTGAAGAAGTCAAGGAATTTGTCAGAAGTGGCGTTTTTGGGTCGTACAATTATGATGACTTGATCGGATCCAGAACAAGATATGTTCGGGTACTTGGTGCATTTTACTTGCGTATCACAGGCAGCGATACTGATGTCTACCAGTACCTAGAGCCTCTGTACAATGAGTATCGGAAGTTGAGAAGTAAATTGGCTGATGGACGTTTCTCGTTGACTCATGTGGATGAGCTTATTGATGAACTTCTAACAAAGGACTACTCATGCGACATTGCCATGCCACGAATCAAGAAAAGCACAAGTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004645 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005977 GO:0005980 GO:0006073 GO:0006091 GO:0006112 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0008184 GO:0009056 GO:0009057 GO:0009251 GO:0009266 GO:0009414 GO:0009415 GO:0009501 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009987 GO:0010035 GO:0015980 GO:0016052 GO:0016740 GO:0016757 GO:0016758 GO:0019842 GO:0030170 GO:0036094 GO:0042221 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0050662 GO:0050896 GO:0055114 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 ko02026 ko04217 ko04910 ko04922 ko04931 map00500 map01100 map01110 map02026 map04217 map04910 map04922 map04931

Pfam Domains

Protein Families

Phosphorylase

Protein Analysis

166

Amino Acids

18.96

Weight (kDa)

5.33

Isoelectric Point (pI)

26.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phosphorylase	PF00343	1 - 85	2.4e-24	Carbohydrate phosphorylase
PRP38	PF03371	88 - 163	4.1e-24	PRP38 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016958)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g06180 pycom17g05650 pycom17g05660
rosa_chinensis	RchiOBHm_Chr1g0375781
rosa_multiflora	Rmu_co8392471.1_g000001 Rmu_sc0000247.1_g000034
rosa_roxburghii	Rroxscaffold_1G00031980
rosa_samantha	Rh2BG532800 Rh2BG532900 Rh2DG541700 Rh2DG541800 Rh3DG289000 Rh4BG206500
rosa_wichuraiana	Rw3G015630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	14
AccI	GTMKAC	1 cut(s)	333
AclWI	GGATC	2 cut(s)	258, 271
AcsI	RAATTY	1 cut(s)	212
AcuI	CTGAAG	2 cut(s)	150, 189
AfaI	GTAC	4 cut(s)	242, 288, 341, 356
AgsI	TTSAA	2 cut(s)	83, 200
AluBI	AGCT	4 cut(s)	111, 134, 167, 424
AluI	AGCT	4 cut(s)	111, 134, 167, 424
AlwI	GGATC	2 cut(s)	258, 271
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	2 cut(s)	45, 318
ApoI	RAATTY	1 cut(s)	212
ArsI	GACNNNNNNTTYG	2 cut(s)	179, 211
BaeI	ACNNNNGTAYC	4 cut(s)	292, 315, 325, 348
BamHI	GGATCC	1 cut(s)	263
BanI	GGYRCC	1 cut(s)	14
BbvI	GCAGC	2 cut(s)	32, 330
BccI	CCATC	2 cut(s)	62, 386
BfaI	CTAG	1 cut(s)	344
BisI	GCNGC	2 cut(s)	46, 319
BlsI	GCNGC	2 cut(s)	47, 320
BmiI	GGNNCC	3 cut(s)	16, 73, 265
BmsI	GCATC	1 cut(s)	57
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bse1I	ACTGG	2 cut(s)	9, 337
Bse3DI	GCAATG	2 cut(s)	42, 462
BseGI	GGATG	3 cut(s)	48, 73, 424
BseMI	GCAATG	2 cut(s)	42, 462
BseMII	CTCAG	1 cut(s)	143
BseNI	ACTGG	2 cut(s)	9, 337
BseRI	GAGGAG	1 cut(s)	107
BseXI	GCAGC	2 cut(s)	32, 330
BseYI	CCCAGC	1 cut(s)	146
BshFI	GGCC	1 cut(s)	8
BshNI	GGYRCC	1 cut(s)	14
BslFI	GGGAC	1 cut(s)	73
BsmFI	GGGAC	1 cut(s)	73
BsnI	GGCC	1 cut(s)	8
Bsp1407I	TGTACA	1 cut(s)	354
Bsp143I	GATC	2 cut(s)	258, 263
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	1 cut(s)	144
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	3 cut(s)	16, 73, 265
BspPI	GGATC	2 cut(s)	258, 271
BspT107I	GGYRCC	1 cut(s)	14
BsrDI	GCAATG	2 cut(s)	42, 462
BsrGI	TGTACA	1 cut(s)	354
BsrI	ACTGG	2 cut(s)	9, 337
BssMI	GATC	2 cut(s)	258, 263
BstAUI	TGTACA	1 cut(s)	354
BstDEI	CTNAG	1 cut(s)	152
BstF5I	GGATG	3 cut(s)	48, 73, 424
BstKTI	GATC	2 cut(s)	261, 266
BstMBI	GATC	2 cut(s)	258, 263
BstV1I	GCAGC	2 cut(s)	32, 330
BstX2I	RGATCY	1 cut(s)	263
BstYI	RGATCY	1 cut(s)	263
BsuRI	GGCC	1 cut(s)	8
BtsCI	GGATG	3 cut(s)	48, 73, 424
BtsIMutI	CAGTG	1 cut(s)	16
CciI	TCATGA	1 cut(s)	136
Csp6I	GTAC	4 cut(s)	241, 287, 340, 355
CviAII	CATG	5 cut(s)	25, 137, 413, 456, 469
CviQI	GTAC	4 cut(s)	241, 287, 340, 355
DdeI	CTNAG	1 cut(s)	152
DpnI	GATC	2 cut(s)	260, 265
DpnII	GATC	2 cut(s)	258, 263
Eco57I	CTGAAG	2 cut(s)	150, 189
FaeI	CATG	5 cut(s)	28, 140, 416, 459, 472
FaiI	YATR	7 cut(s)	26, 138, 249, 279, 414, 457, 470
FaqI	GGGAC	1 cut(s)	73
FatI	CATG	5 cut(s)	24, 136, 412, 455, 468
FblI	GTMKAC	1 cut(s)	333
Fnu4HI	GCNGC	2 cut(s)	46, 319
FokI	GGATG	3 cut(s)	35, 80, 431
Fsp4HI	GCNGC	2 cut(s)	46, 319
FspBI	CTAG	1 cut(s)	344
GluI	GCNGC	2 cut(s)	46, 319
GsaI	CCCAGC	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	8
Hin1II	CATG	5 cut(s)	28, 140, 416, 459, 472
HincII	GTYRAC	1 cut(s)	408
HindII	GTYRAC	1 cut(s)	408
HinfI	GANTC	3 cut(s)	61, 409, 477
Hpy166II	GTNNAC	2 cut(s)	334, 408
Hpy188I	TCNGA	3 cut(s)	221, 263, 369
Hpy188III	TCNNGA	5 cut(s)	65, 137, 185, 267, 481
Hpy8I	GTNNAC	2 cut(s)	334, 408
HpyAV	CCTTC	1 cut(s)	164
HpyCH4IV	ACGT	1 cut(s)	397
HpyCH4V	TGCA	3 cut(s)	35, 48, 296
HpyF3I	CTNAG	1 cut(s)	152
HpySE526I	ACGT	1 cut(s)	397
Hsp92II	CATG	5 cut(s)	28, 140, 416, 459, 472
Kzo9I	GATC	2 cut(s)	258, 263
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	8 cut(s)	22, 31, 50, 132, 198, 280, 300, 350
Lsp1109I	GCAGC	2 cut(s)	32, 330
LweI	GCATC	1 cut(s)	57
MaeI	CTAG	1 cut(s)	344
MaeII	ACGT	1 cut(s)	397
MalI	GATC	2 cut(s)	260, 265
MboI	GATC	2 cut(s)	258, 263
MboII	GAAGA	1 cut(s)	212
MflI	RGATCY	1 cut(s)	263
MluCI	AATT	4 cut(s)	54, 212, 244, 383
MlyI	GAGTC	2 cut(s)	55, 403
MnlI	CCTC	4 cut(s)	85, 88, 128, 360
MseI	TTAA	1 cut(s)	499
MslI	CAYNNNNRTG	2 cut(s)	417, 467
NdeII	GATC	2 cut(s)	258, 263
NlaIII	CATG	5 cut(s)	28, 140, 416, 459, 472
NlaIV	GGNNCC	3 cut(s)	16, 73, 265
PagI	TCATGA	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	477
PkrI	GCNGC	2 cut(s)	47, 320
PleI	GAGTC	2 cut(s)	55, 403
PpsI	GAGTC	2 cut(s)	55, 403
PspFI	CCCAGC	1 cut(s)	146
PspN4I	GGNNCC	3 cut(s)	16, 73, 265
PsuI	RGATCY	1 cut(s)	263
RsaI	GTAC	4 cut(s)	242, 288, 341, 356
RsaNI	GTAC	4 cut(s)	241, 287, 340, 355
RseI	CAYNNNNRTG	2 cut(s)	417, 467
SaqAI	TTAA	1 cut(s)	499
SatI	GCNGC	2 cut(s)	46, 319
Sau3AI	GATC	2 cut(s)	258, 263
SchI	GAGTC	2 cut(s)	55, 403
SetI	ASST	7 cut(s)	99, 113, 136, 169, 345, 400, 426
SfaNI	GCATC	1 cut(s)	57
SmiMI	CAYNNNNRTG	2 cut(s)	417, 467
Sse9I	AATT	4 cut(s)	54, 212, 244, 383
SspMI	CTAG	1 cut(s)	344
TaiI	ACGT	1 cut(s)	400
TaqI	TCGA	1 cut(s)	100
TasI	AATT	4 cut(s)	54, 212, 244, 383
TatI	WGTACW	1 cut(s)	354
TfiI	GAWTC	1 cut(s)	477
Tru1I	TTAA	1 cut(s)	499
Tru9I	TTAA	1 cut(s)	499
TscAI	CASTG	1 cut(s)	16
TseI	GCWGC	2 cut(s)	45, 318
TspDTI	ATGAA	3 cut(s)	41, 53, 447
TspRI	CASTG	1 cut(s)	16
XapI	RAATTY	1 cut(s)	212
XmiI	GTMKAC	1 cut(s)	333
XspI	CTAG	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.