Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0016958

Physical Location & Seq

Genomic Coordinates Reverse (-)

74202395 .. 74203382

Gene Structure 988 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG532900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGACAGATAAGGCCACTGGCTTTGGTGGATTGAAGCTCACTTCTGCGGCTATGGGAGCCAACCTTGGACGTCTTGATGGGATTTGCATGACTTTCTTGAAACCCAGATCAGTCAAGGCTCACGCTGCTTCTGGTATGGTGAAGCGCATTCATGAATACAAGAGACAACTTATGAATATTTTGGGAATTGTTTACCGGTACAAGAAAATGAAAGAAATGAGTGCTTCACAAAGGAAAACAAAGTTTGTTCCACATGTTTGTATGTTCGGAGGAAAAGCATTTGCAACGTATGTACAAGCCAAAAGAATTGTGAAGTTTATCACAGATGTCGCGGAGACTGTAAATCATGATCCTAGTATAGGTGATCTACTGAAGGTTATCTTCGTACCTGATTATAATGTCAGTGTTGCTGAATTATTAATTCCTGCGAGTGAGCTCTCACAGCACATCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004645 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005977 GO:0005980 GO:0006073 GO:0006091 GO:0006112 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0008184 GO:0009056 GO:0009057 GO:0009251 GO:0009266 GO:0009414 GO:0009415 GO:0009501 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009987 GO:0010035 GO:0015980 GO:0016052 GO:0016740 GO:0016757 GO:0016758 GO:0019842 GO:0030170 GO:0036094 GO:0042221 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0050662 GO:0050896 GO:0055114 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 ko02026 ko04217 ko04910 ko04922 ko04931 map00500 map01100 map01110 map02026 map04217 map04910 map04922 map04931

Pfam Domains

Protein Families

Phosphorylase

Protein Analysis

151

Amino Acids

16.76

Weight (kDa)

9.93

Isoelectric Point (pI)

36.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phosphorylase	PF00343	46 - 150	1.3e-40	Carbohydrate phosphorylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016958)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g06180 pycom17g05650 pycom17g05660
rosa_chinensis	RchiOBHm_Chr1g0375781
rosa_multiflora	Rmu_co8392471.1_g000001 Rmu_sc0000247.1_g000034
rosa_roxburghii	Rroxscaffold_1G00031980
rosa_samantha	Rh2BG532800 Rh2BG532900 Rh2DG541700 Rh2DG541800 Rh3DG289000 Rh4BG206500
rosa_wichuraiana	Rw3G015630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	396
AatII	GACGTC	1 cut(s)	73
AccII	CGCG	1 cut(s)	332
AciI	CCGC	2 cut(s)	47, 332
AclWI	GGATC	1 cut(s)	344
AcuI	CTGAAG	1 cut(s)	392
AcyI	GRCGYC	1 cut(s)	70
AfaI	GTAC	3 cut(s)	200, 294, 387
AfiI	CCNNNNNNNGG	1 cut(s)	359
AflIII	ACRYGT	1 cut(s)	253
AgeI	ACCGGT	1 cut(s)	195
AgsI	TTSAA	2 cut(s)	34, 100
AluBI	AGCT	2 cut(s)	37, 436
AluI	AGCT	2 cut(s)	37, 436
Alw21I	GWGCWC	1 cut(s)	438
Alw26I	GTCTC	2 cut(s)	157, 329
AlwI	GGATC	1 cut(s)	344
AoxI	GGCC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	125
AseI	ATTAAT	1 cut(s)	419
AsiGI	ACCGGT	1 cut(s)	195
AspLEI	GCGC	1 cut(s)	147
AsuHPI	GGTGA	2 cut(s)	151, 374
BanII	GRGCYC	1 cut(s)	438
Bbv12I	GWGCWC	1 cut(s)	438
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	1 cut(s)	71
BcoDI	GTCTC	2 cut(s)	157, 329
BfaI	CTAG	1 cut(s)	354
BisI	GCNGC	2 cut(s)	48, 126
BlsI	GCNGC	2 cut(s)	49, 127
BmiI	GGNNCC	1 cut(s)	58
BsaHI	GRCGYC	1 cut(s)	70
BsaJI	CCNNGG	1 cut(s)	64
BsaWI	WCCGGW	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	1 cut(s)	359
Bse118I	RCCGGY	1 cut(s)	195
Bse1I	ACTGG	1 cut(s)	22
BseDI	CCNNGG	1 cut(s)	64
BseLI	CCNNNNNNNGG	1 cut(s)	359
BseNI	ACTGG	1 cut(s)	22
BseXI	GCAGC	1 cut(s)	112
Bsh1236I	CGCG	1 cut(s)	332
BshFI	GGCC	1 cut(s)	14
BshTI	ACCGGT	1 cut(s)	195
BsiHKAI	GWGCWC	1 cut(s)	438
BsiSI	CCGG	1 cut(s)	196
BslI	CCNNNNNNNGG	1 cut(s)	359
BsmAI	GTCTC	2 cut(s)	157, 329
BsmI	GAATGC	1 cut(s)	147
BsnI	GGCC	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	438
Bsp1407I	TGTACA	1 cut(s)	292
Bsp143I	GATC	3 cut(s)	107, 349, 364
BspACI	CCGC	2 cut(s)	47, 332
BspANI	GGCC	1 cut(s)	14
BspFNI	CGCG	1 cut(s)	332
BspHI	TCATGA	2 cut(s)	151, 346
BspLI	GGNNCC	1 cut(s)	58
BspPI	GGATC	1 cut(s)	344
BsrFI	RCCGGY	1 cut(s)	195
BsrGI	TGTACA	1 cut(s)	292
BsrI	ACTGG	1 cut(s)	22
BssAI	RCCGGY	1 cut(s)	195
BssECI	CCNNGG	1 cut(s)	64
BssMI	GATC	3 cut(s)	107, 349, 364
BssNI	GRCGYC	1 cut(s)	70
BssT1I	CCWWGG	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	340
BstACI	GRCGYC	1 cut(s)	70
BstAUI	TGTACA	1 cut(s)	292
BstENI	CCTNNNNNAGG	1 cut(s)	357
BstFNI	CGCG	1 cut(s)	332
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	3 cut(s)	110, 352, 367
BstMAI	GTCTC	2 cut(s)	157, 329
BstMBI	GATC	3 cut(s)	107, 349, 364
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 125, 442
BstNSI	RCATGY	1 cut(s)	257
BstUI	CGCG	1 cut(s)	332
BstV1I	GCAGC	1 cut(s)	112
BsuRI	GGCC	1 cut(s)	14
BtsIMutI	CAGTG	2 cut(s)	15, 409
CciI	TCATGA	2 cut(s)	151, 346
CfoI	GCGC	1 cut(s)	147
Cfr10I	RCCGGY	1 cut(s)	195
Csp6I	GTAC	3 cut(s)	199, 293, 386
CspAI	ACCGGT	1 cut(s)	195
CspCI	CAANNNNNGTGG	2 cut(s)	4, 39
CviAII	CATG	4 cut(s)	88, 152, 254, 347
CviJI	RGCY	8 cut(s)	14, 21, 37, 50, 59, 119, 299, 436
CviKI_1	RGCY	8 cut(s)	14, 21, 37, 50, 59, 119, 299, 436
CviQI	GTAC	3 cut(s)	199, 293, 386
DpnI	GATC	3 cut(s)	109, 351, 366
DpnII	GATC	3 cut(s)	107, 349, 364
Ecl136II	GAGCTC	1 cut(s)	436
Eco130I	CCWWGG	1 cut(s)	64
Eco24I	GRGCYC	1 cut(s)	438
Eco53kI	GAGCTC	1 cut(s)	436
Eco57I	CTGAAG	1 cut(s)	392
EcoICRI	GAGCTC	1 cut(s)	436
EcoNI	CCTNNNNNAGG	1 cut(s)	357
EcoT14I	CCWWGG	1 cut(s)	64
EcoT38I	GRGCYC	1 cut(s)	438
ErhI	CCWWGG	1 cut(s)	64
FaeI	CATG	4 cut(s)	91, 155, 257, 350
FalI	AAGNNNNNCTT	2 cut(s)	365, 397
FatI	CATG	4 cut(s)	87, 151, 253, 346
Fnu4HI	GCNGC	2 cut(s)	48, 126
FriOI	GRGCYC	1 cut(s)	438
Fsp4HI	GCNGC	2 cut(s)	48, 126
FspBI	CTAG	1 cut(s)	354
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	2 cut(s)	48, 126
HaeIII	GGCC	1 cut(s)	14
HapII	CCGG	1 cut(s)	196
HhaI	GCGC	1 cut(s)	147
Hin1I	GRCGYC	1 cut(s)	70
Hin1II	CATG	4 cut(s)	91, 155, 257, 350
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HpaII	CCGG	1 cut(s)	196
HphI	GGTGA	2 cut(s)	151, 374
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	1 cut(s)	269
Hpy188III	TCNNGA	4 cut(s)	74, 97, 152, 347
Hpy8I	GTNNAC	1 cut(s)	193
HpyAV	CCTTC	1 cut(s)	367
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4IV	ACGT	2 cut(s)	70, 287
HpyCH4V	TGCA	2 cut(s)	87, 284
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 125, 442
HpySE526I	ACGT	2 cut(s)	70, 287
Hsp92I	GRCGYC	1 cut(s)	70
Hsp92II	CATG	4 cut(s)	91, 155, 257, 350
HspAI	GCGC	1 cut(s)	145
Kzo9I	GATC	3 cut(s)	107, 349, 364
LmnI	GCTCC	1 cut(s)	56
LpnPI	CCDG	7 cut(s)	3, 117, 118, 209, 402, 436, 438
Lsp1109I	GCAGC	1 cut(s)	112
MaeI	CTAG	1 cut(s)	354
MaeII	ACGT	2 cut(s)	70, 287
MalI	GATC	3 cut(s)	109, 351, 366
MboI	GATC	3 cut(s)	107, 349, 364
MboII	GAAGA	1 cut(s)	373
MhlI	GDGCHC	1 cut(s)	438
MluCI	AATT	4 cut(s)	186, 306, 413, 420
MnlI	CCTC	1 cut(s)	263
MseI	TTAA	1 cut(s)	419
MspI	CCGG	1 cut(s)	196
Mva1269I	GAATGC	1 cut(s)	147
MvnI	CGCG	1 cut(s)	332
MwoI	GCNNNNNNNGC	3 cut(s)	56, 125, 442
NdeII	GATC	3 cut(s)	107, 349, 364
NlaIII	CATG	4 cut(s)	91, 155, 257, 350
NlaIV	GGNNCC	1 cut(s)	58
NspI	RCATGY	1 cut(s)	257
PagI	TCATGA	2 cut(s)	151, 346
PciI	ACATGT	1 cut(s)	253
PctI	GAATGC	1 cut(s)	147
PinAI	ACCGGT	1 cut(s)	195
PkrI	GCNGC	2 cut(s)	49, 127
PscI	ACATGT	1 cut(s)	253
PshBI	ATTAAT	1 cut(s)	419
PsiI	TTATAA	1 cut(s)	396
Psp124BI	GAGCTC	1 cut(s)	438
PspN4I	GGNNCC	1 cut(s)	58
RsaI	GTAC	3 cut(s)	200, 294, 387
RsaNI	GTAC	3 cut(s)	199, 293, 386
SacI	GAGCTC	1 cut(s)	438
SaqAI	TTAA	1 cut(s)	419
SatI	GCNGC	2 cut(s)	48, 126
Sau3AI	GATC	3 cut(s)	107, 349, 364
SduI	GDGCHC	1 cut(s)	438
SetI	ASST	9 cut(s)	39, 66, 73, 290, 364, 378, 391, 438, 455
Sse9I	AATT	4 cut(s)	186, 306, 413, 420
SsiI	CCGC	2 cut(s)	47, 332
SspI	AATATT	1 cut(s)	178
SspMI	CTAG	1 cut(s)	354
SstI	GAGCTC	1 cut(s)	438
StyI	CCWWGG	1 cut(s)	64
TaaI	ACNGT	1 cut(s)	340
TaiI	ACGT	2 cut(s)	73, 290
TasI	AATT	4 cut(s)	186, 306, 413, 420
TatI	WGTACW	1 cut(s)	292
TauI	GCSGC	1 cut(s)	50
Tru1I	TTAA	1 cut(s)	419
Tru9I	TTAA	1 cut(s)	419
TscAI	CASTG	2 cut(s)	22, 409
TseI	GCWGC	1 cut(s)	125
TspDTI	ATGAA	4 cut(s)	140, 168, 188, 224
TspRI	CASTG	2 cut(s)	22, 409
VspI	ATTAAT	1 cut(s)	419
XagI	CCTNNNNNAGG	1 cut(s)	357
XceI	RCATGY	1 cut(s)	257
XspI	CTAG	1 cut(s)	354
ZraI	GACGTC	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.