Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0008856

Physical Location & Seq

Genomic Coordinates Reverse (-)

6123189 .. 6123437

Gene Structure 249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g07730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGAGCATTGCCAGAAGTCCACCAGACGAAATCTATCACTGCCTGATCTTGACTCTTTTGTCTTCCATCTTAAATGGGGCACTGGTTAAAGATGCATTTCGTTTAGGGATGTCGGTTACAAAAGCCGTGGACCAAAATACAGATACAGATAAGCCTGAACAACTAGATGGTATTATAGAAAGAAGTGACAATGGTGCAAATTTTGCTGACGCGGGGGACATTGTAATTGCACATGTGTGCAAGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3741 DUF4378

Protein Analysis

83

Amino Acids

8.8

Weight (kDa)

4.64

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008856)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36010 FvH4_3g36010 FvH4_3g36010
malus_domestica	MD11G1109700.v1.1
prunus_persica	Prupe.6G078200_v2.0.a1 Prupe.6G078200_v2.0.a1
pyrus_communis	pycom03g07730 pycom11g09050
rosa_chinensis	RchiOBHm_Chr5g0064421
rosa_laevigata	RLG00000035723
rosa_multiflora	Rmu_sc0001125.1_g000006
rosa_roxburghii	Rroxscaffold_1G00016570
rosa_rugosa	Rorug05G0364600 Rorug05G0364700.1 Rorug05G0364800 Rorug05G0364800 Rorug05G0364800 Rorug05G0364900
rosa_samantha	Rh5AG423200 Rh5BG438700 Rh5CG461400 Rh5DG452000
rosa_wichuraiana	Rw5G039780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	58
AccII	CGCG	1 cut(s)	212
AciI	CCGC	1 cut(s)	212
AcsI	RAATTY	1 cut(s)	199
AflIII	ACRYGT	1 cut(s)	232
AleI	CACNNNNGTG	1 cut(s)	235
ApoI	RAATTY	1 cut(s)	199
AspS9I	GGNCC	1 cut(s)	130
AvaII	GGWCC	1 cut(s)	130
BaeGI	GKGCMC	1 cut(s)	82
BbsI	GAAGAC	1 cut(s)	54
BccI	CCATC	2 cut(s)	74, 161
BceAI	ACGGC	1 cut(s)	110
BfaI	CTAG	1 cut(s)	164
Bme18I	GGWCC	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	130
BmsI	GCATC	1 cut(s)	82
BpiI	GAAGAC	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	126
Bse1I	ACTGG	1 cut(s)	87
Bse3DI	GCAATG	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	1 cut(s)	114
BseMI	GCAATG	1 cut(s)	6
BseNI	ACTGG	1 cut(s)	87
BseSI	GKGCMC	1 cut(s)	82
Bsh1236I	CGCG	1 cut(s)	212
BslFI	GGGAC	1 cut(s)	230
BsmFI	GGGAC	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp143I	GATC	1 cut(s)	45
BspACI	CCGC	1 cut(s)	212
BspFNI	CGCG	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	6
BsrI	ACTGG	1 cut(s)	87
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	1 cut(s)	45
BstAPI	GCANNNNNTGC	1 cut(s)	203
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	114
BstFNI	CGCG	1 cut(s)	212
BstKTI	GATC	1 cut(s)	48
BstMBI	GATC	1 cut(s)	45
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstNSI	RCATGY	1 cut(s)	236
BstSLI	GKGCMC	1 cut(s)	82
BstUI	CGCG	1 cut(s)	212
BstV2I	GAAGAC	1 cut(s)	54
BtgI	CCRYGG	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	114
BtsI	GCAGTG	1 cut(s)	37
BtsIMutI	CAGTG	2 cut(s)	37, 80
Cfr13I	GGNCC	1 cut(s)	130
CseI	GACGC	1 cut(s)	218
CspCI	CAANNNNNGTGG	2 cut(s)	108, 143
CviAII	CATG	1 cut(s)	233
CviJI	RGCY	2 cut(s)	125, 154
CviKI_1	RGCY	2 cut(s)	125, 154
DpnI	GATC	1 cut(s)	47
DpnII	GATC	1 cut(s)	45
DrdI	GACNNNNNNGTC	1 cut(s)	58
DseDI	GACNNNNNNGTC	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	130
EcoT22I	ATGCAT	1 cut(s)	97
FaeI	CATG	1 cut(s)	236
FaiI	YATR	2 cut(s)	176, 234
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	1 cut(s)	232
FauI	CCCGC	1 cut(s)	205
FokI	GGATG	1 cut(s)	121
FspBI	CTAG	1 cut(s)	164
HgaI	GACGC	1 cut(s)	218
Hin1II	CATG	1 cut(s)	236
HinfI	GANTC	1 cut(s)	52
Hpy166II	GTNNAC	2 cut(s)	20, 130
Hpy188III	TCNNGA	1 cut(s)	49
Hpy8I	GTNNAC	2 cut(s)	20, 130
HpyCH4V	TGCA	4 cut(s)	95, 197, 230, 240
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
Hsp92II	CATG	1 cut(s)	236
Kzo9I	GATC	1 cut(s)	45
LpnPI	CCDG	5 cut(s)	25, 36, 56, 68, 168
LweI	GCATC	1 cut(s)	82
MaeI	CTAG	1 cut(s)	164
MaeIII	GTNAC	2 cut(s)	115, 185
MalI	GATC	1 cut(s)	47
MboI	GATC	1 cut(s)	45
MboII	GAAGA	1 cut(s)	54
MhlI	GDGCHC	1 cut(s)	82
MluCI	AATT	2 cut(s)	199, 225
MlyI	GAGTC	1 cut(s)	46
Mph1103I	ATGCAT	1 cut(s)	97
MseI	TTAA	3 cut(s)	71, 87, 247
MslI	CAYNNNNRTG	1 cut(s)	235
MvnI	CGCG	1 cut(s)	212
MwoI	GCNNNNNNNGC	1 cut(s)	203
NdeII	GATC	1 cut(s)	45
NlaIII	CATG	1 cut(s)	236
NmuCI	GTSAC	1 cut(s)	185
NsiI	ATGCAT	1 cut(s)	97
NspI	RCATGY	1 cut(s)	236
OliI	CACNNNNGTG	1 cut(s)	235
PciI	ACATGT	1 cut(s)	232
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PscI	ACATGT	1 cut(s)	232
PspPI	GGNCC	1 cut(s)	130
RseI	CAYNNNNRTG	1 cut(s)	235
SaqAI	TTAA	3 cut(s)	71, 87, 247
Sau3AI	GATC	1 cut(s)	45
Sau96I	GGNCC	1 cut(s)	130
SchI	GAGTC	1 cut(s)	46
SduI	GDGCHC	1 cut(s)	82
SfaNI	GCATC	1 cut(s)	82
SinI	GGWCC	1 cut(s)	130
SmiMI	CAYNNNNRTG	1 cut(s)	235
Sse9I	AATT	2 cut(s)	199, 225
SsiI	CCGC	1 cut(s)	212
SspMI	CTAG	1 cut(s)	164
TasI	AATT	2 cut(s)	199, 225
Tru1I	TTAA	3 cut(s)	71, 87, 247
Tru9I	TTAA	3 cut(s)	71, 87, 247
TscAI	CASTG	2 cut(s)	44, 87
TseFI	GTSAC	1 cut(s)	185
Tsp45I	GTSAC	1 cut(s)	185
TspRI	CASTG	2 cut(s)	44, 87
VpaK11BI	GGWCC	1 cut(s)	130
XapI	RAATTY	1 cut(s)	199
XceI	RCATGY	1 cut(s)	236
XspI	CTAG	1 cut(s)	164
Zsp2I	ATGCAT	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.