Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008856

Physical Location & Seq

Genomic Coordinates Forward (+)

48557929 .. 48564194

Gene Structure 6266 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0364800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGGTTTCTCCAAAGACAATCTTAAAGGCCTTCTTCTAGCTCTCCTATCAAGTGGGTTCATAGGGGCAAGCTTCATCATCAAGAAAAAAGGCCTCCGAAGAGCCGCAGCTGCTTCTGGGGTCAGAGCTGGCTATGGTGGGTATTCTTATCTCTTGGAGCCTCTGTGGTGGCTGGGATTGATAACAATGGTTGTGGGAGAGGTTGCGAATTTCATTGCATATGCATTTGCTCCAGCAGTGCTTGTTACCCCTCTTGGTGCATTAAGTATAATTATCAGTGCTGTGCTGGCTCATTTTATCCTGAAGGAGAGGTTGCACTGGCTCGGGGTTTTGGGCTGTGTAATGTGCATTTCTGGATCGGTCATAATTGTTATCCATGCACCACAGGAGCATCCTATCACCAATGTTCTTGAAATATGGAGTATGGCAACTCAACCAGCTTTCATGCTTTATGTGGGCTCGGTGATTGTTCTGGTTTTCATACTAATCTTCCATTTTGTGCCACGATGTGGGCAAACAAATGTGCTAGTTTTCACTGGCATTTGTTCATTGATGGGTTCTCTATCAGTAATGAGTGTTAAAGCCCTAGGAACTGCTCTAAAATTAACTTTTGAGGGAAAGAATCAGTTAATCTATCCAGAGACATGGTTTTTTATGTTGGTTGTAACTACATGTGTCATCACTCAGATGAACTATCTGAACAAGGCGCTTGATACATTCAACACAGCTGTCGTGTCCCCCATTTATTATGTCATGTTTACGACACTGGCAATTATCGCTAGTGTGATAATGTTTAAGGATTGGGATGACCAGAGTGGAGGAGCGATCATATCAGAAATATGTGGCTTTATTGTTGTATTATCTGGAACCATCTTATTGCATTCAACAAAAGAATTTGAGAGAAGCTCATCCTTTAGAGTTAATGCAGGTAGCTATATGTCTGTATCCCCTTCATTATCTGCACGTCTCTGTAGTGGGAATGGAGACTCATTGAAACACGGTGAAAATGAAGAGTCGTTTTCTGAGGAAATTTCATTAAGAAGACAAGAATTGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3741 DUF4378

Protein Analysis

352

Amino Acids

38.37

Weight (kDa)

7.61

Isoelectric Point (pI)

31.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mg_trans_NIPA	PF05653	6 - 298	1.3e-131	Magnesium transporter NIPA
EamA	PF00892	9 - 124	1e-06	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008856)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36010 FvH4_3g36010 FvH4_3g36010
malus_domestica	MD11G1109700.v1.1
prunus_persica	Prupe.6G078200_v2.0.a1 Prupe.6G078200_v2.0.a1
pyrus_communis	pycom03g07730 pycom11g09050
rosa_chinensis	RchiOBHm_Chr5g0064421
rosa_laevigata	RLG00000035723
rosa_multiflora	Rmu_sc0001125.1_g000006
rosa_roxburghii	Rroxscaffold_1G00016570
rosa_rugosa	Rorug05G0364600 Rorug05G0364700.1 Rorug05G0364800 Rorug05G0364800 Rorug05G0364800 Rorug05G0364900
rosa_samantha	Rh5AG423200 Rh5BG438700 Rh5CG461400 Rh5DG452000
rosa_wichuraiana	Rw5G039780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	917
AccB7I	CCANNNNNTGG	1 cut(s)	509
AciI	CCGC	1 cut(s)	105
AclWI	GGATC	1 cut(s)	364
AcsI	RAATTY	3 cut(s)	208, 893, 1029
AcuI	CTGAAG	1 cut(s)	323
AdeI	CACNNNGTG	1 cut(s)	509
AfaI	GTAC	1 cut(s)	1055
AfiI	CCNNNNNNNGG	1 cut(s)	509
AflIII	ACRYGT	1 cut(s)	671
AgsI	TTSAA	4 cut(s)	413, 721, 885, 994
AjiI	CACGTC	1 cut(s)	965
AluBI	AGCT	8 cut(s)	41, 72, 110, 128, 440, 728, 906, 933
AluI	AGCT	8 cut(s)	41, 72, 110, 128, 440, 728, 906, 933
Alw26I	GTCTC	3 cut(s)	635, 971, 978
AlwI	GGATC	1 cut(s)	364
Ama87I	CYCGRG	1 cut(s)	323
AoxI	GGCC	2 cut(s)	28, 91
ApeKI	GCWGC	2 cut(s)	107, 110
ApoI	RAATTY	3 cut(s)	208, 893, 1029
AspA2I	CCTAGG	1 cut(s)	586
AspLEI	GCGC	1 cut(s)	709
AsuHPI	GGTGA	3 cut(s)	391, 475, 1013
AvaI	CYCGRG	1 cut(s)	323
AvrII	CCTAGG	1 cut(s)	586
BanII	GRGCYC	1 cut(s)	461
BbsI	GAAGAC	1 cut(s)	1048
BbvI	GCAGC	2 cut(s)	97, 119
BccI	CCATC	2 cut(s)	547, 878
BciVI	GTATCC	1 cut(s)	955
BcoDI	GTCTC	3 cut(s)	635, 971, 978
BfaI	CTAG	5 cut(s)	38, 527, 587, 780, 1057
BfmI	CTRYAG	1 cut(s)	970
BfoI	RGCGCY	1 cut(s)	710
BfuAI	ACCTGC	1 cut(s)	917
BfuI	GTATCC	1 cut(s)	955
BisI	GCNGC	3 cut(s)	105, 108, 111
BlnI	CCTAGG	1 cut(s)	586
BlsI	GCNGC	3 cut(s)	106, 109, 112
BmeT110I	CYCGRG	1 cut(s)	323
BmgBI	CACGTC	1 cut(s)	965
BmiI	GGNNCC	2 cut(s)	159, 868
BmsI	GCATC	1 cut(s)	400
BpiI	GAAGAC	1 cut(s)	1048
BplI	GAGNNNNNCTC	2 cut(s)	890, 922
BpmI	CTGGAG	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	586
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	1 cut(s)	509
Bse1I	ACTGG	3 cut(s)	323, 541, 771
Bse3DI	GCAATG	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	586
BseGI	GGATG	3 cut(s)	391, 811, 908
BseLI	CCNNNNNNNGG	1 cut(s)	509
BseMI	GCAATG	1 cut(s)	213
BseMII	CTCAG	2 cut(s)	698, 1014
BseNI	ACTGG	3 cut(s)	323, 541, 771
BseRI	GAGGAG	1 cut(s)	834
BseXI	GCAGC	2 cut(s)	97, 119
BseYI	CCCAGC	1 cut(s)	172
BsgI	GTGCAG	1 cut(s)	945
BshFI	GGCC	2 cut(s)	30, 93
BsiHKCI	CYCGRG	1 cut(s)	323
BslFI	GGGAC	1 cut(s)	721
BslI	CCNNNNNNNGG	1 cut(s)	509
BsmAI	GTCTC	3 cut(s)	635, 971, 978
BsmBI	CGTCTC	1 cut(s)	971
BsmFI	GGGAC	1 cut(s)	721
BsmI	GAATGC	1 cut(s)	880
BsnI	GGCC	2 cut(s)	30, 93
BsoBI	CYCGRG	1 cut(s)	323
Bsp1286I	GDGCHC	1 cut(s)	461
Bsp143I	GATC	2 cut(s)	356, 825
BspACI	CCGC	1 cut(s)	105
BspANI	GGCC	2 cut(s)	30, 93
BspCNI	CTCAG	2 cut(s)	697, 1015
BspLI	GGNNCC	2 cut(s)	159, 868
BspMI	ACCTGC	1 cut(s)	917
BspPI	GGATC	1 cut(s)	364
BspQI	GCTCTTC	1 cut(s)	94
BsrDI	GCAATG	1 cut(s)	213
BsrI	ACTGG	3 cut(s)	323, 541, 771
BssECI	CCNNGG	1 cut(s)	586
BssMI	GATC	2 cut(s)	356, 825
BssT1I	CCWWGG	1 cut(s)	586
Bst4CI	ACNGT	1 cut(s)	1001
Bst6I	CTCTTC	2 cut(s)	94, 1005
BstC8I	GCNNGC	3 cut(s)	70, 130, 288
BstDEI	CTNAG	2 cut(s)	684, 1023
BstF5I	GGATG	3 cut(s)	391, 811, 908
BstH2I	RGCGCY	1 cut(s)	710
BstHHI	GCGC	1 cut(s)	709
BstKTI	GATC	2 cut(s)	359, 828
BstMAI	GTCTC	3 cut(s)	635, 971, 978
BstMBI	GATC	2 cut(s)	356, 825
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 287, 776
BstNSI	RCATGY	1 cut(s)	675
BstSFI	CTRYAG	1 cut(s)	970
BstV1I	GCAGC	2 cut(s)	97, 119
BstV2I	GAAGAC	1 cut(s)	1048
BstXI	CCANNNNNNTGG	1 cut(s)	645
BsuI	GTATCC	1 cut(s)	955
BsuRI	GGCC	2 cut(s)	30, 93
BtrI	CACGTC	1 cut(s)	965
BtsCI	GGATG	3 cut(s)	391, 811, 908
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	5 cut(s)	243, 283, 316, 534, 764
BveI	ACCTGC	1 cut(s)	917
Cac8I	GCNNGC	3 cut(s)	70, 130, 288
CfoI	GCGC	1 cut(s)	709
Csp6I	GTAC	1 cut(s)	1054
CspCI	CAANNNNNGTGG	2 cut(s)	174, 209
CviAII	CATG	5 cut(s)	377, 445, 645, 672, 754
CviQI	GTAC	1 cut(s)	1054
DdeI	CTNAG	2 cut(s)	684, 1023
DpnI	GATC	2 cut(s)	358, 827
DpnII	GATC	2 cut(s)	356, 825
DraIII	CACNNNGTG	1 cut(s)	509
Eam1104I	CTCTTC	2 cut(s)	94, 1005
EarI	CTCTTC	2 cut(s)	94, 1005
Eco130I	CCWWGG	1 cut(s)	586
Eco147I	AGGCCT	2 cut(s)	30, 93
Eco24I	GRGCYC	1 cut(s)	461
Eco57I	CTGAAG	1 cut(s)	323
Eco88I	CYCGRG	1 cut(s)	323
EcoT14I	CCWWGG	1 cut(s)	586
EcoT22I	ATGCAT	1 cut(s)	226
EcoT38I	GRGCYC	1 cut(s)	461
ErhI	CCWWGG	1 cut(s)	586
Esp3I	CGTCTC	1 cut(s)	971
FaeI	CATG	5 cut(s)	380, 448, 648, 675, 757
FalI	AAGNNNNNCTT	3 cut(s)	38, 18, 50
FaqI	GGGAC	1 cut(s)	721
FatI	CATG	5 cut(s)	376, 444, 644, 671, 753
FauNDI	CATATG	1 cut(s)	220
Fnu4HI	GCNGC	3 cut(s)	105, 108, 111
FokI	GGATG	3 cut(s)	378, 818, 895
FriOI	GRGCYC	1 cut(s)	461
Fsp4HI	GCNGC	3 cut(s)	105, 108, 111
FspBI	CTAG	5 cut(s)	38, 527, 587, 780, 1057
GlaI	GCGC	1 cut(s)	708
GluI	GCNGC	3 cut(s)	105, 108, 111
GsaI	CCCAGC	1 cut(s)	176
GsuI	CTGGAG	1 cut(s)	216
HaeII	RGCGCY	1 cut(s)	710
HaeIII	GGCC	2 cut(s)	30, 93
HhaI	GCGC	1 cut(s)	709
Hin1II	CATG	5 cut(s)	380, 448, 648, 675, 757
Hin6I	GCGC	1 cut(s)	707
HinP1I	GCGC	1 cut(s)	707
HindIII	AAGCTT	1 cut(s)	70
HinfI	GANTC	3 cut(s)	622, 986, 1013
HphI	GGTGA	3 cut(s)	391, 475, 1013
Hpy166II	GTNNAC	1 cut(s)	759
Hpy188I	TCNGA	6 cut(s)	98, 125, 687, 699, 835, 1024
Hpy188III	TCNNGA	6 cut(s)	82, 301, 354, 410, 638, 864
Hpy8I	GTNNAC	1 cut(s)	759
HpyAV	CCTTC	3 cut(s)	41, 298, 960
HpyCH4III	ACNGT	1 cut(s)	1001
HpyCH4IV	ACGT	1 cut(s)	964
HpyCH4V	TGCA	9 cut(s)	218, 224, 260, 316, 348, 380, 880, 926, 962
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 287, 776
HpyF3I	CTNAG	2 cut(s)	684, 1023
HpySE526I	ACGT	1 cut(s)	964
Hsp92II	CATG	5 cut(s)	380, 448, 648, 675, 757
HspAI	GCGC	1 cut(s)	707
Kzo9I	GATC	2 cut(s)	356, 825
LguI	GCTCTTC	1 cut(s)	94
LmnI	GCTCC	4 cut(s)	157, 235, 388, 821
Lsp1109I	GCAGC	2 cut(s)	97, 119
LweI	GCATC	1 cut(s)	400
MaeI	CTAG	5 cut(s)	38, 527, 587, 780, 1057
MaeII	ACGT	1 cut(s)	964
MaeIII	GTNAC	2 cut(s)	244, 664
MalI	GATC	2 cut(s)	358, 827
MboI	GATC	2 cut(s)	356, 825
MboII	GAAGA	5 cut(s)	26, 111, 481, 1022, 1053
MhlI	GDGCHC	1 cut(s)	461
MluCI	AATT	8 cut(s)	208, 270, 366, 602, 771, 893, 1029, 1049
MlyI	GAGTC	2 cut(s)	980, 1022
MnlI	CCTC	8 cut(s)	104, 171, 193, 261, 303, 607, 812, 1018
Mph1103I	ATGCAT	1 cut(s)	226
MseI	TTAA	8 cut(s)	24, 263, 579, 605, 629, 795, 921, 1037
MslI	CAYNNNNRTG	1 cut(s)	686
MspA1I	CMGCKG	2 cut(s)	110, 728
Mva1269I	GAATGC	1 cut(s)	880
MwoI	GCNNNNNNNGC	3 cut(s)	110, 287, 776
NdeI	CATATG	1 cut(s)	220
NdeII	GATC	2 cut(s)	356, 825
NlaIII	CATG	5 cut(s)	380, 448, 648, 675, 757
NlaIV	GGNNCC	2 cut(s)	159, 868
NsiI	ATGCAT	1 cut(s)	226
NspI	RCATGY	1 cut(s)	675
PceI	AGGCCT	2 cut(s)	30, 93
PciI	ACATGT	1 cut(s)	671
PciSI	GCTCTTC	1 cut(s)	94
PctI	GAATGC	1 cut(s)	880
PfeI	GAWTC	1 cut(s)	622
PflMI	CCANNNNNTGG	1 cut(s)	509
PkrI	GCNGC	3 cut(s)	106, 109, 112
PleI	GAGTC	2 cut(s)	980, 1021
PpsI	GAGTC	2 cut(s)	980, 1021
PscI	ACATGT	1 cut(s)	671
PspFI	CCCAGC	1 cut(s)	172
PspN4I	GGNNCC	2 cut(s)	159, 868
PvuII	CAGCTG	2 cut(s)	110, 728
RsaI	GTAC	1 cut(s)	1055
RsaNI	GTAC	1 cut(s)	1054
RseI	CAYNNNNRTG	1 cut(s)	686
SapI	GCTCTTC	1 cut(s)	94
SaqAI	TTAA	8 cut(s)	24, 263, 579, 605, 629, 795, 921, 1037
SatI	GCNGC	3 cut(s)	105, 108, 111
Sau3AI	GATC	2 cut(s)	356, 825
SchI	GAGTC	2 cut(s)	980, 1022
SduI	GDGCHC	1 cut(s)	461
SfaNI	GCATC	1 cut(s)	400
SfcI	CTRYAG	1 cut(s)	970
SmiMI	CAYNNNNRTG	1 cut(s)	686
Sse9I	AATT	8 cut(s)	208, 270, 366, 602, 771, 893, 1029, 1049
SseBI	AGGCCT	2 cut(s)	30, 93
SsiI	CCGC	1 cut(s)	105
SspMI	CTAG	5 cut(s)	38, 527, 587, 780, 1057
StuI	AGGCCT	2 cut(s)	30, 93
StyI	CCWWGG	1 cut(s)	586
TaaI	ACNGT	1 cut(s)	1001
TaiI	ACGT	1 cut(s)	967
TaqII	GACCGA	1 cut(s)	349
TasI	AATT	8 cut(s)	208, 270, 366, 602, 771, 893, 1029, 1049
TatI	WGTACW	1 cut(s)	1053
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	1 cut(s)	622
Tru1I	TTAA	8 cut(s)	24, 263, 579, 605, 629, 795, 921, 1037
Tru9I	TTAA	8 cut(s)	24, 263, 579, 605, 629, 795, 921, 1037
TscAI	CASTG	5 cut(s)	243, 283, 323, 541, 771
TseI	GCWGC	2 cut(s)	107, 110
TspRI	CASTG	5 cut(s)	243, 283, 323, 541, 771
Van91I	CCANNNNNTGG	1 cut(s)	509
XapI	RAATTY	3 cut(s)	208, 893, 1029
XceI	RCATGY	1 cut(s)	675
XmaJI	CCTAGG	1 cut(s)	586
XspI	CTAG	5 cut(s)	38, 527, 587, 780, 1057
Zsp2I	ATGCAT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.