Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0013851

Physical Location & Seq

Genomic Coordinates Forward (+)

6708086 .. 6711409

Gene Structure 3324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2136 bp

ATGTTCCATTCAAGAGCCAAATCGATGAACCTTCTCCGTCATTGCGGCAGCAATCCCCTGCAATCCCATCACCAACCATATCAGACTTTCCGCTCCAACAAACCCAAGACCACCATCCCTCGCCGCCGCCAACGACTTCACAGAAACACCGCAAAGCTCCGCAGGCCGATACCTTTCGTCTCCGATGTCAAAGCAACGCAAGACCCAGAAGAGGCTTTGTCTCTCTTCCACGAGTACCACCAAATGGGCTTCAAACACGACTACCCTTCTTACTCTGCTCTTCTCTACAAGGTCGCTCGCCGCCGGAATTTCGAAGCTGTCGACGCCGTTCTCGGCCTTGTCCGAGATCGAAACATTCACTGCAAAGATACCCTTTTCATTGCTCTGATTCAACATTACGGGAAAGCCGATTTGGTAGAGAAAGCCGTCGATCTTTTTCATCAAATGCCTTCTTTTAACTGTGTCCGTACGTTGCAGTGCTTCAATGAGCTCCTTAATGTGCTTGTTGATGGCGGTAGGCTTTCAGATGCGGATGAGATATTTGGGAGGTGTTCTACATTGGGTTTTCGTCCGAATTCGATTTCGTATAATATAATGATCAAGGGGTGGCTTCAGAAGGGCGACTGGGAAGAAGCATGGAAGGTGTTTGATGAAATGCTTGAGAAAAAGGTGCAACCTAGTGTTGTGACGTATAATAGTCTTATAGGGTTTTTCGGTAGAAAGGGTGAGTTGGAGAAAGCTACTGGTTTGTTTGAGGACATGAGACAGAAAGGGAAATACCCGAATGCGGTGACATATGCATTATTGATGGAAGGTTTGTGCTTGGCGGGGAAGCATGATGAAGCAAAGAAGATGATGTTTGATATGGAGTATCGAGGGTGTAAACCACGGCTTGTGAATTATGGTGTATTGATGAGTGATCTTGGAAAGAGAGGGAAGATTGAGGAGGCAAAGTCTTTCCTTCAGGAGATGAAGAAGAGGCGGTTTAAGCCGAATGTTGTGATTTATAACATATTGATTAACTTTCTGTGCAAGGAAGGCAGGGCTGCGGAGGCTTACAAAGTCTTGGTTGAAATGCAAGTTGGAGGCTGTGAGCCGAATGCAGCTACTTACAGGATGATGGTTGATGGGTTTTGTCAGATAGAAGATTTTGAGGGAGGTTCTAAGATCATAAGTTCTTCAATTTTCTACCTTTCCTTCGAATTTATGGCAACCCGGAAATCGACTCCCTTGGCCCTCAAGCTCACAATCTGGCTGCTGCTTCTAGCTCTTGCCATTCCATGCGCCACCTCTGCCCGAATCCTCGATGAGGAAAACCCTGCGGCCCCCGAGGAGACTGATACAACTCAAACACAAACACCTGTTTCCAATGTGCCACCTCCTCAGGTAGCTACAAATCCAGCAGGCCCTGCTGCAGCTACAAGTGCCACAGTTGGCAATACAGCATCCTACCATCCACTAACCTTCTTCTTGCATGACATTATCGGTGGATCAAACCCCTCGGCTAGAGCTGTCACTGGAATTGTGGCCAATCCGGCAGTCAGCGGTCAAGTCCCTTTTGCCAAACCCAATGGAGCAAATATCCCAATTGGGAATGGCATTCCCCAGAACAACAACAACAATGGAATCATCAACAACAACAATGTCCCCTTCTTCACCGGCCTTGGTGGAAACGCCGGCAACAACTTGATCCAAAACAATGGCAACAACAACATCATTGGTGGGAATGGGCTTCCGTACCTGAACAGGGCTCAGCTTCCCCCTGGAATCACCCTTCAGAAGCTTATGTTTGGGACCCTTACAGTTTTCGACGATGAGCTGACTGAAGGGCATGAGCTTGGATCTGGCTTGCTCGGCAAGGCACAAGGGTTTTACGTGGCGACTTCTGAAGATGGGAGCAGCCAGACCATTGCCTTCACAGCCATGTTTCAGAGTGGAGGTTATGCTGATAGCCTCACCTTCTTTGGTGTGCATCAGGTGGCAGCTTCGGAGTCTCATCTTGCAGTCATGGGAGGAACTGGCAAGTATCTCAATGCAAAGGGTTATGCTCTTGTTAAGACTACTCCTGCAACAAATCAGCAAAACACTGATGGAGTTGACACTGTGCTGCAGTTTACCACGTATCTTACTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent PPR PPR_2 PPR_3 Rad51

Protein Analysis

712

Amino Acids

78.43

Weight (kDa)

8.72

Isoelectric Point (pI)

36.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	135 - 256	5.3e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	180 - 240	1.1e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	188 - 219	1.2e-07	PPR repeat
PPR_2	PF13041	191 - 235	4.3e-17	PPR repeat family
PPR	PF01535	194 - 223	4.2e-08	PPR repeat
PPR_1	PF12854	224 - 255	4.9e-08	PPR repeat
PPR_2	PF13041	226 - 274	8.4e-15	PPR repeat family
PPR	PF01535	229 - 258	6.3e-07	PPR repeat
PPR_3	PF13812	250 - 311	4.7e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	258 - 290	5.2e-06	PPR repeat
PPR_2	PF13041	298 - 334	3.9e-06	PPR repeat family
PPR_3	PF13812	320 - 374	2.8e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	329 - 360	2.2e-11	PPR repeat
PPR_2	PF13041	331 - 380	1.3e-17	PPR repeat family
Dirigent	PF03018	589 - 706	1.2e-26	Dirigent-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07740
fragaria_vesca	FvH4_3g34780
malus_domestica	MD04G1036700.v1.1 MD11G1115700.v1.1 MD12G1096600.v1.1
prunus_persica	Prupe.6G007300_v2.0.a1
pyrus_communis	pycom03g08320
rosa_chinensis	RchiOBHm_Chr5g0062521
rosa_laevigata	RLG00000035563
rosa_multiflora	Rmu_sc0004988.1_g000027
rosa_roxburghii	Rroxscaffold_1G00018090
rosa_rugosa	Rorug05G0350400
rosa_samantha	Rh5AG410400 Rh5BG424400 Rh5CG448100 Rh5DG438700
rosa_wichuraiana	Rw5G038640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1008
AccB7I	CCANNNNNTGG	1 cut(s)	244
AccBSI	CCGCTC	1 cut(s)	93
AccI	GTMKAC	1 cut(s)	321
AclWI	GGATC	3 cut(s)	1498, 1684, 1849
AcoI	YGGCCR	1 cut(s)	1527
AcsI	RAATTY	3 cut(s)	307, 574, 1202
AcuI	CTGAAG	5 cut(s)	596, 947, 1760, 1845, 1908
AcyI	GRCGYC	1 cut(s)	324
AfaI	GTAC	3 cut(s)	236, 469, 1739
AfiI	CCNNNNNNNGG	5 cut(s)	211, 244, 787, 1309, 1747
AgsI	TTSAA	6 cut(s)	12, 253, 392, 484, 1073, 1182
AjnI	CCWGG	1 cut(s)	1762
AjuI	GAANNNNNNNTTGG	4 cut(s)	395, 427, 1065, 1097
Alw21I	GWGCWC	1 cut(s)	492
Alw26I	GTCTC	5 cut(s)	184, 225, 757, 1328, 1998
AlwI	GGATC	3 cut(s)	1498, 1684, 1849
AlwNI	CAGNNNCTG	1 cut(s)	1409
Ama87I	CYCGRG	1 cut(s)	1328
AoxI	GGCC	7 cut(s)	164, 334, 1233, 1323, 1405, 1527, 1660
ApoI	RAATTY	3 cut(s)	307, 574, 1202
AspLEI	GCGC	1 cut(s)	1286
AspS9I	GGNCC	4 cut(s)	1234, 1324, 1406, 1794
AsuC2I	CCSGG	1 cut(s)	1216
AsuHPI	GGTGA	6 cut(s)	62, 737, 802, 1648, 1762, 1948
AsuII	TTCGAA	2 cut(s)	312, 1200
AvaI	CYCGRG	1 cut(s)	1328
AvaII	GGWCC	1 cut(s)	1794
AxyI	CCTNAGG	1 cut(s)	1383
BalI	TGGCCA	1 cut(s)	1529
BanII	GRGCYC	2 cut(s)	492, 1753
BauI	CACGAG	1 cut(s)	230
Bbv12I	GWGCWC	1 cut(s)	492
BccI	CCATC	9 cut(s)	75, 122, 503, 802, 1114, 1121, 1461, 1886, 2084
BceAI	ACGGC	3 cut(s)	311, 410, 905
BciT130I	CCWGG	1 cut(s)	1764
BclI	TGATCA	1 cut(s)	597
BcnI	CCSGG	1 cut(s)	1216
BcoDI	GTCTC	5 cut(s)	184, 225, 757, 1328, 1998
BfaI	CTAG	4 cut(s)	678, 1265, 1506, 2134
BfmI	CTRYAG	2 cut(s)	1413, 2108
BglI	GCCNNNNNGGC	1 cut(s)	1535
BlpI	GCTNAGC	1 cut(s)	1752
Bme1390I	CCNGG	2 cut(s)	1216, 1764
Bme18I	GGWCC	1 cut(s)	1794
BmeT110I	CYCGRG	1 cut(s)	1328
BmgT120I	GGNCC	4 cut(s)	1234, 1324, 1406, 1794
BmiI	GGNNCC	3 cut(s)	1326, 1795, 1796
BmrFI	CCNGG	2 cut(s)	1216, 1764
BmrI	ACTGGG	1 cut(s)	634
BmsI	GCATC	3 cut(s)	517, 1454, 1981
BmuI	ACTGGG	1 cut(s)	634
Bpu1102I	GCTNAGC	1 cut(s)	1752
Bpu14I	TTCGAA	2 cut(s)	312, 1200
BpuEI	CTTGAG	2 cut(s)	680, 1223
BpuMI	CCSGG	1 cut(s)	1216
Bsa29I	ATCGAT	1 cut(s)	23
BsaAI	YACGTR	2 cut(s)	1876, 2121
BsaHI	GRCGYC	1 cut(s)	324
BsaJI	CCNNGG	6 cut(s)	887, 1230, 1329, 1500, 1663, 1762
BsaXI	ACNNNNNCTCC	2 cut(s)	938, 968
Bsc4I	CCNNNNNNNGG	5 cut(s)	211, 244, 787, 1309, 1747
Bse118I	RCCGGY	2 cut(s)	1658, 1676
Bse1I	ACTGG	4 cut(s)	629, 748, 1522, 2023
Bse21I	CCTNAGG	1 cut(s)	1383
Bse3DI	GCAATG	3 cut(s)	40, 378, 1908
BseBI	CCWGG	1 cut(s)	1764
BseCI	ATCGAT	1 cut(s)	23
BseDI	CCNNGG	6 cut(s)	887, 1230, 1329, 1500, 1663, 1762
BseGI	GGATG	5 cut(s)	114, 538, 1122, 1445, 1453
BseLI	CCNNNNNNNGG	5 cut(s)	211, 244, 787, 1309, 1747
BseMI	GCAATG	3 cut(s)	40, 378, 1908
BseMII	CTCAG	2 cut(s)	1397, 1766
BseNI	ACTGG	4 cut(s)	629, 748, 1522, 2023
BseRI	GAGGAG	3 cut(s)	959, 1346, 1371
BshFI	GGCC	7 cut(s)	166, 336, 1235, 1325, 1407, 1529, 1662
BshVI	ATCGAT	1 cut(s)	23
BsiHKAI	GWGCWC	1 cut(s)	492
BsiHKCI	CYCGRG	1 cut(s)	1328
BsiSI	CCGG	5 cut(s)	304, 1216, 1535, 1659, 1677
BsiWI	CGTACG	1 cut(s)	467
BslFI	GGGAC	3 cut(s)	1538, 1631, 1807
BslI	CCNNNNNNNGG	5 cut(s)	211, 244, 787, 1309, 1747
BsmAI	GTCTC	5 cut(s)	184, 225, 757, 1328, 1998
BsmBI	CGTCTC	1 cut(s)	184
BsmFI	GGGAC	3 cut(s)	1538, 1631, 1807
BsmI	GAATGC	3 cut(s)	790, 1105, 1599
BsnI	GGCC	7 cut(s)	166, 336, 1235, 1325, 1407, 1529, 1662
BsoBI	CYCGRG	1 cut(s)	1328
Bsp119I	TTCGAA	2 cut(s)	312, 1200
Bsp1286I	GDGCHC	2 cut(s)	492, 1753
Bsp143I	GATC	8 cut(s)	346, 430, 597, 919, 1167, 1490, 1689, 1841
Bsp1720I	GCTNAGC	1 cut(s)	1752
BspANI	GGCC	7 cut(s)	166, 336, 1235, 1325, 1407, 1529, 1662
BspCNI	CTCAG	2 cut(s)	1396, 1765
BspDI	ATCGAT	1 cut(s)	23
BspLI	GGNNCC	3 cut(s)	1326, 1795, 1796
BspMAI	CTGCAG	2 cut(s)	1417, 2112
BspPI	GGATC	3 cut(s)	1498, 1684, 1849
BspQI	GCTCTTC	1 cut(s)	285
BspT104I	TTCGAA	2 cut(s)	312, 1200
BsrBI	CCGCTC	1 cut(s)	93
BsrDI	GCAATG	3 cut(s)	40, 378, 1908
BsrFI	RCCGGY	2 cut(s)	1658, 1676
BsrI	ACTGG	4 cut(s)	629, 748, 1522, 2023
BssAI	RCCGGY	2 cut(s)	1658, 1676
BssECI	CCNNGG	6 cut(s)	887, 1230, 1329, 1500, 1663, 1762
BssMI	GATC	8 cut(s)	346, 430, 597, 919, 1167, 1490, 1689, 1841
BssNI	GRCGYC	1 cut(s)	324
BssSI	CACGAG	1 cut(s)	230
BssT1I	CCWWGG	2 cut(s)	1230, 1663
Bst2BI	CACGAG	1 cut(s)	230
Bst2UI	CCWGG	1 cut(s)	1764
Bst4CI	ACNGT	4 cut(s)	461, 1432, 1804, 2104
Bst6I	CTCTTC	4 cut(s)	204, 230, 285, 971
BstACI	GRCGYC	1 cut(s)	324
BstAPI	GCANNNNNTGC	1 cut(s)	1409
BstBAI	YACGTR	2 cut(s)	1876, 2121
BstBI	TTCGAA	2 cut(s)	312, 1200
BstC8I	GCNNGC	5 cut(s)	164, 298, 1405, 1678, 1850
BstDEI	CTNAG	3 cut(s)	1164, 1383, 1752
BstDSI	CCRYGG	1 cut(s)	887
BstENI	CCTNNNNNAGG	1 cut(s)	1307
BstF5I	GGATG	5 cut(s)	114, 538, 1122, 1445, 1453
BstHHI	GCGC	1 cut(s)	1286
BstKTI	GATC	8 cut(s)	349, 433, 600, 922, 1170, 1493, 1692, 1844
BstMAI	GTCTC	5 cut(s)	184, 225, 757, 1328, 1998
BstMBI	GATC	8 cut(s)	346, 430, 597, 919, 1167, 1490, 1689, 1841
BstNI	CCWGG	1 cut(s)	1764
BstSCI	CCNGG	2 cut(s)	1214, 1762
BstSFI	CTRYAG	2 cut(s)	1413, 2108
BstX2I	RGATCY	1 cut(s)	1841
BstXI	CCANNNNNNTGG	1 cut(s)	1700
BstYI	RGATCY	1 cut(s)	1841
Bsu15I	ATCGAT	1 cut(s)	23
Bsu36I	CCTNAGG	1 cut(s)	1383
BsuRI	GGCC	7 cut(s)	166, 336, 1235, 1325, 1407, 1529, 1662
BsuTUI	ATCGAT	1 cut(s)	23
BtgI	CCRYGG	1 cut(s)	887
BtsCI	GGATG	5 cut(s)	114, 538, 1122, 1445, 1453
BtsI	GCAGTG	2 cut(s)	358, 482
BtsIMutI	CAGTG	5 cut(s)	358, 482, 1515, 2085, 2100
Cac8I	GCNNGC	5 cut(s)	164, 298, 1405, 1678, 1850
CaiI	CAGNNNCTG	1 cut(s)	1409
CfoI	GCGC	1 cut(s)	1286
Cfr10I	RCCGGY	2 cut(s)	1658, 1676
Cfr13I	GGNCC	4 cut(s)	1234, 1324, 1406, 1794
ClaI	ATCGAT	1 cut(s)	23
CseI	GACGC	1 cut(s)	332
Csp6I	GTAC	3 cut(s)	235, 468, 1738
CviAII	CATG	8 cut(s)	636, 760, 836, 1281, 1475, 1832, 1924, 2008
CviQI	GTAC	3 cut(s)	235, 468, 1738
DdeI	CTNAG	3 cut(s)	1164, 1383, 1752
DpnI	GATC	8 cut(s)	348, 432, 599, 921, 1169, 1492, 1691, 1843
DpnII	GATC	8 cut(s)	346, 430, 597, 919, 1167, 1490, 1689, 1841
EaeI	YGGCCR	1 cut(s)	1527
Eam1104I	CTCTTC	4 cut(s)	204, 230, 285, 971
EarI	CTCTTC	4 cut(s)	204, 230, 285, 971
Ecl136II	GAGCTC	1 cut(s)	490
Eco130I	CCWWGG	2 cut(s)	1230, 1663
Eco24I	GRGCYC	2 cut(s)	492, 1753
Eco47I	GGWCC	1 cut(s)	1794
Eco53kI	GAGCTC	1 cut(s)	490
Eco57I	CTGAAG	5 cut(s)	596, 947, 1760, 1845, 1908
Eco81I	CCTNAGG	1 cut(s)	1383
Eco88I	CYCGRG	1 cut(s)	1328
EcoICRI	GAGCTC	1 cut(s)	490
EcoNI	CCTNNNNNAGG	1 cut(s)	1307
EcoO109I	RGGNCCY	2 cut(s)	1406, 1794
EcoRI	GAATTC	1 cut(s)	574
EcoRII	CCWGG	1 cut(s)	1762
EcoT14I	CCWWGG	2 cut(s)	1230, 1663
EcoT22I	ATGCAT	1 cut(s)	802
EcoT38I	GRGCYC	2 cut(s)	492, 1753
ErhI	CCWWGG	2 cut(s)	1230, 1663
Esp3I	CGTCTC	1 cut(s)	184
FaeI	CATG	8 cut(s)	639, 763, 839, 1284, 1478, 1835, 1927, 2011
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FaqI	GGGAC	3 cut(s)	1538, 1631, 1807
FatI	CATG	8 cut(s)	635, 759, 835, 1280, 1474, 1831, 1923, 2007
FauI	CCCGC	1 cut(s)	820
FauNDI	CATATG	1 cut(s)	796
FbaI	TGATCA	1 cut(s)	597
FblI	GTMKAC	1 cut(s)	321
FokI	GGATG	5 cut(s)	101, 545, 1129, 1432, 1440
FriOI	GRGCYC	2 cut(s)	492, 1753
FspBI	CTAG	4 cut(s)	678, 1265, 1506, 2134
GlaI	GCGC	1 cut(s)	1285
HaeIII	GGCC	7 cut(s)	166, 336, 1235, 1325, 1407, 1529, 1662
HapII	CCGG	5 cut(s)	304, 1216, 1535, 1659, 1677
HgaI	GACGC	1 cut(s)	332
HhaI	GCGC	1 cut(s)	1286
Hin1I	GRCGYC	1 cut(s)	324
Hin1II	CATG	8 cut(s)	639, 763, 839, 1284, 1478, 1835, 1927, 2011
Hin6I	GCGC	1 cut(s)	1284
HinP1I	GCGC	1 cut(s)	1284
HincII	GTYRAC	2 cut(s)	322, 2098
HindII	GTYRAC	2 cut(s)	322, 2098
HindIII	AAGCTT	1 cut(s)	1781
HinfI	GANTC	6 cut(s)	388, 1225, 1299, 1626, 1767, 1991
HpaII	CCGG	5 cut(s)	304, 1216, 1535, 1659, 1677
HphI	GGTGA	6 cut(s)	62, 737, 802, 1648, 1762, 1948
Hpy166II	GTNNAC	4 cut(s)	322, 884, 2098, 2115
Hpy188III	TCNNGA	2 cut(s)	12, 965
Hpy8I	GTNNAC	4 cut(s)	322, 884, 2098, 2115
Hpy99I	CGWCG	3 cut(s)	326, 431, 1814
HpyCH4III	ACNGT	4 cut(s)	461, 1432, 1804, 2104
HpyCH4IV	ACGT	4 cut(s)	470, 689, 1875, 2120
HpyF3I	CTNAG	3 cut(s)	1164, 1383, 1752
HpySE526I	ACGT	4 cut(s)	470, 689, 1875, 2120
Hsp92I	GRCGYC	1 cut(s)	324
Hsp92II	CATG	8 cut(s)	639, 763, 839, 1284, 1478, 1835, 1927, 2011
HspAI	GCGC	1 cut(s)	1284
KflI	GGGWCCC	1 cut(s)	1794
KroI	GCCGGC	1 cut(s)	1676
KroNI	GCCGGC	1 cut(s)	1678
Ksp22I	TGATCA	1 cut(s)	597
Kzo9I	GATC	8 cut(s)	346, 430, 597, 919, 1167, 1490, 1689, 1841
LguI	GCTCTTC	1 cut(s)	285
LmnI	GCTCC	5 cut(s)	98, 162, 495, 1574, 1896
LweI	GCATC	3 cut(s)	517, 1454, 1981
MaeI	CTAG	4 cut(s)	678, 1265, 1506, 2134
MaeII	ACGT	4 cut(s)	470, 689, 1875, 2120
MaeIII	GTNAC	3 cut(s)	685, 790, 1513
MalI	GATC	8 cut(s)	348, 432, 599, 921, 1169, 1492, 1691, 1843
MbiI	CCGCTC	1 cut(s)	93
MboI	GATC	8 cut(s)	346, 430, 597, 919, 1167, 1490, 1689, 1841
MfeI	CAATTG	1 cut(s)	1587
MflI	RGATCY	1 cut(s)	1841
MhlI	GDGCHC	2 cut(s)	492, 1753
MlsI	TGGCCA	1 cut(s)	1529
MluCI	AATT	7 cut(s)	307, 574, 898, 1182, 1202, 1521, 1587
MluNI	TGGCCA	1 cut(s)	1529
MlyI	GAGTC	2 cut(s)	1219, 2000
MmeI	TCCRAC	3 cut(s)	120, 711, 1063
Mox20I	TGGCCA	1 cut(s)	1529
Mph1103I	ATGCAT	1 cut(s)	802
MroNI	GCCGGC	1 cut(s)	1676
MscI	TGGCCA	1 cut(s)	1529
MseI	TTAA	5 cut(s)	456, 495, 987, 1020, 2055
MslI	CAYNNNNRTG	1 cut(s)	1922
Msp20I	TGGCCA	1 cut(s)	1529
MspA1I	CMGCKG	1 cut(s)	1545
MspI	CCGG	5 cut(s)	304, 1216, 1535, 1659, 1677
MspR9I	CCNGG	2 cut(s)	1216, 1764
MunI	CAATTG	1 cut(s)	1587
Mva1269I	GAATGC	3 cut(s)	790, 1105, 1599
MvaI	CCWGG	1 cut(s)	1764
NaeI	GCCGGC	1 cut(s)	1678
NciI	CCSGG	1 cut(s)	1216
NdeI	CATATG	1 cut(s)	796
NdeII	GATC	8 cut(s)	346, 430, 597, 919, 1167, 1490, 1689, 1841
NgoMIV	GCCGGC	1 cut(s)	1676
NlaIII	CATG	8 cut(s)	639, 763, 839, 1284, 1478, 1835, 1927, 2011
NlaIV	GGNNCC	3 cut(s)	1326, 1795, 1796
NmeAIII	GCCGAG	3 cut(s)	312, 1481, 1833
NmuCI	GTSAC	3 cut(s)	685, 790, 1513
NsiI	ATGCAT	1 cut(s)	802
NspV	TTCGAA	2 cut(s)	312, 1200
PciSI	GCTCTTC	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	2 cut(s)	318, 405
PctI	GAATGC	3 cut(s)	790, 1105, 1599
PdiI	GCCGGC	1 cut(s)	1678
PfeI	GAWTC	4 cut(s)	388, 1299, 1626, 1767
Pfl23II	CGTACG	1 cut(s)	467
PflMI	CCANNNNNTGG	1 cut(s)	244
PleI	GAGTC	2 cut(s)	1219, 1999
PpsI	GAGTC	2 cut(s)	1219, 1999
Ppu21I	YACGTR	2 cut(s)	1876, 2121
PpuMI	RGGWCCY	1 cut(s)	1794
PsiI	TTATAA	1 cut(s)	1008
Psp124BI	GAGCTC	1 cut(s)	492
Psp5II	RGGWCCY	1 cut(s)	1794
Psp6I	CCWGG	1 cut(s)	1762
PspGI	CCWGG	1 cut(s)	1762
PspLI	CGTACG	1 cut(s)	467
PspN4I	GGNNCC	3 cut(s)	1326, 1795, 1796
PspPI	GGNCC	4 cut(s)	1234, 1324, 1406, 1794
PspPPI	RGGWCCY	1 cut(s)	1794
PstI	CTGCAG	2 cut(s)	1417, 2112
PstNI	CAGNNNCTG	1 cut(s)	1409
PsuI	RGATCY	1 cut(s)	1841
RsaI	GTAC	3 cut(s)	236, 469, 1739
RsaNI	GTAC	3 cut(s)	235, 468, 1738
RseI	CAYNNNNRTG	1 cut(s)	1922
SacI	GAGCTC	1 cut(s)	492
SalI	GTCGAC	1 cut(s)	320
SapI	GCTCTTC	1 cut(s)	285
SaqAI	TTAA	5 cut(s)	456, 495, 987, 1020, 2055
Sau3AI	GATC	8 cut(s)	346, 430, 597, 919, 1167, 1490, 1689, 1841
Sau96I	GGNCC	4 cut(s)	1234, 1324, 1406, 1794
SchI	GAGTC	2 cut(s)	1219, 2000
ScrFI	CCNGG	2 cut(s)	1216, 1764
SduI	GDGCHC	2 cut(s)	492, 1753
SfaNI	GCATC	3 cut(s)	517, 1454, 1981
SfcI	CTRYAG	2 cut(s)	1413, 2108
SfuI	TTCGAA	2 cut(s)	312, 1200
SinI	GGWCC	1 cut(s)	1794
SmiMI	CAYNNNNRTG	1 cut(s)	1922
SmlI	CTYRAG	2 cut(s)	659, 1238
SmoI	CTYRAG	2 cut(s)	659, 1238
Sse9I	AATT	7 cut(s)	307, 574, 898, 1182, 1202, 1521, 1587
SspMI	CTAG	4 cut(s)	678, 1265, 1506, 2134
SstI	GAGCTC	1 cut(s)	492
StyD4I	CCNGG	2 cut(s)	1214, 1762
StyI	CCWWGG	2 cut(s)	1230, 1663
TaaI	ACNGT	4 cut(s)	461, 1432, 1804, 2104
TaiI	ACGT	4 cut(s)	473, 692, 1878, 2123
TasI	AATT	7 cut(s)	307, 574, 898, 1182, 1202, 1521, 1587
TauI	GCSGC	5 cut(s)	48, 126, 129, 303, 1325
TfiI	GAWTC	4 cut(s)	388, 1299, 1626, 1767
Tru1I	TTAA	5 cut(s)	456, 495, 987, 1020, 2055
Tru9I	TTAA	5 cut(s)	456, 495, 987, 1020, 2055
TscAI	CASTG	5 cut(s)	365, 482, 1522, 2092, 2107
TseFI	GTSAC	3 cut(s)	685, 790, 1513
Tsp45I	GTSAC	3 cut(s)	685, 790, 1513
TspDTI	ATGAA	6 cut(s)	41, 367, 428, 666, 855, 986
TspGWI	ACGGA	3 cut(s)	26, 455, 1725
TspRI	CASTG	5 cut(s)	365, 482, 1522, 2092, 2107
Van91I	CCANNNNNTGG	1 cut(s)	244
VpaK11BI	GGWCC	1 cut(s)	1794
XagI	CCTNNNNNAGG	1 cut(s)	1307
XapI	RAATTY	3 cut(s)	307, 574, 1202
XmiI	GTMKAC	1 cut(s)	321
XspI	CTAG	4 cut(s)	678, 1265, 1506, 2134
Zsp2I	ATGCAT	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.