Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004188

Physical Location & Seq

Genomic Coordinates Reverse (-)

7670214 .. 7673116

Gene Structure 2903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGACCATCTTAAAGCCATTGATCGATCCAGTTGCAGCAAACAGAGTCCATCCAAATAACCATAGAAAAATTAGTCAGTACCTTAGTCTGTATGCTCACCATGGTGTTCTTCCTAGCCAACTTCTTCAGGGAAATGCTGCCAAAAACTGGGGGCGAGTTGATAATTTCAGATACAATTGCTGTTGTATATGTGTGGATGCTTCCCTCCCTGTGCTGGACCAATATGTGGACCAAAGAGTAGATTGCATGATAGACGCTGGGTTGCTTAATGAAGTCCATGAAATTTTCAACCCAAATGCAGATTATACTCGTGGTTTGCGGCAGGCCATTGGGGTTCGGGAGTTTGAAAACTTTTTGAGAGCTTACATTGTTGAAGCCAGTGATGAAGGAAATCATTTGATAGATGAGTCCATGTCCTTGAAATCAGTAGACCTGGCTGATAAGAAATTGATGGAGAACATGAGGGAAATCTTGAAGTCCTTCAGTGACAGCCAACCCAAAATCGTGTTAAAAGAAGCTATTGATAAAATGAAAATGAACACCCGAAGACTAGTTCGTCGTCAGAAACGAAGGATAAATCAACTGGAGACACTGTTTGGATGGAACATACATTTCCTGGATGCAACAGAATCCATATCCTGCAAAGCGGATAATACATGGGCTACAGAAGTGGTTGGACCTTCTGTGGAAATGATTAGATCTTTCCTCGATCAGGATTCAAGTTTGGTTCCTGATTCGGATACCCCAGATGCCATTGGAGTGAATACGATGCAGCGGGACTTGTGGACTCAGTATACATGCAAGGCCTGTGGTGACAAGATCCTGAGGGGAGCACACGAGTGGGAACAACACAGGCAGGGTCGTGTCCATCGCAAACGAGTTTCTCAGCTTAAAAAGTCTCAAGGGTTTCTCTCACCGGAGCAGCATCAGCTGCCTCAACATGTAGATTGTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009451 GO:0009690 GO:0009691 GO:0009824 GO:0009987 GO:0010467 GO:0010817 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0034754 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

319

Amino Acids

36.47

Weight (kDa)

7.18

Isoelectric Point (pI)

36.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IPPT	PF01715	8 - 189	1e-21	IPP transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27760
fragaria_vesca	FvH4_3g29650 FvH4_3g29650 FvH4_3g29650 FvH4_3g29650 FvH4_3g29650 FvH4_3g29650 FvH4_3g29650 FvH4_3g29650 FvH4_3g29650 FvH4_3g29650 FvH4_3g29650 FvH4_3g29650
malus_domestica	MD03G1136100.v1.1
prunus_persica	Prupe.6G120800_v2.0.a1 Prupe.6G120800_v2.0.a1 Prupe.6G120800_v2.0.a1 Prupe.6G120800_v2.0.a1 Prupe.6G120800_v2.0.a1 Prupe.6G120800_v2.0.a1 Prupe.6G120800_v2.0.a1
pyrus_communis	pycom03g09200
rosa_chinensis	RchiOBHm_Chr5g0055011
rosa_laevigata	RLG00000034956
rosa_multiflora	Rmu_sc0003653.1_g000029
rosa_roxburghii	Rroxscaffold_1G00025500
rosa_rugosa	Rorug05G0289900 Rorug05G0290000
rosa_samantha	Rh5AG360000 Rh5BG371000 Rh5CG393300 Rh5DG384800
rosa_wichuraiana	Rw5G033870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	555
AccB7I	CCANNNNNTGG	2 cut(s)	147, 226
AccI	GTMKAC	2 cut(s)	429, 794
AciI	CCGC	3 cut(s)	319, 647, 775
AclWI	GGATC	2 cut(s)	20, 814
AcsI	RAATTY	1 cut(s)	282
AcuI	CTGAAG	2 cut(s)	110, 466
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	4 cut(s)	147, 214, 226, 712
AflIII	ACRYGT	1 cut(s)	940
AgsI	TTSAA	6 cut(s)	289, 347, 374, 421, 475, 720
AhlI	ACTAGT	1 cut(s)	550
AjnI	CCWGG	2 cut(s)	432, 615
AleI	CACNNNNGTG	2 cut(s)	102, 838
AluBI	AGCT	4 cut(s)	362, 518, 889, 931
AluI	AGCT	4 cut(s)	362, 518, 889, 931
Alw21I	GWGCWC	1 cut(s)	835
Alw26I	GTCTC	2 cut(s)	581, 903
AlwI	GGATC	2 cut(s)	20, 814
AoxI	GGCC	2 cut(s)	324, 804
ApeKI	GCWGC	5 cut(s)	35, 137, 772, 922, 931
ApoI	RAATTY	1 cut(s)	282
Asp700I	GAANNNNTTC	1 cut(s)	479
AspS9I	GGNCC	3 cut(s)	217, 229, 677
AsuHPI	GGTGA	3 cut(s)	89, 824, 906
AvaII	GGWCC	3 cut(s)	217, 229, 677
AxyI	CCTNAGG	1 cut(s)	824
BauI	CACGAG	2 cut(s)	309, 836
BbsI	GAAGAC	1 cut(s)	553
Bbv12I	GWGCWC	1 cut(s)	835
BbvI	GCAGC	5 cut(s)	47, 124, 784, 918, 934
BccI	CCATC	5 cut(s)	14, 57, 445, 594, 876
BcgI	CGANNNNNNTGC	2 cut(s)	14, 48
BciT130I	CCWGG	2 cut(s)	434, 617
BciVI	GTATCC	1 cut(s)	733
BcoDI	GTCTC	2 cut(s)	581, 903
BcuI	ACTAGT	1 cut(s)	550
BfaI	CTAG	2 cut(s)	114, 551
BfmI	CTRYAG	1 cut(s)	663
BfuI	GTATCC	1 cut(s)	733
BglII	AGATCT	1 cut(s)	698
BisI	GCNGC	6 cut(s)	36, 138, 320, 773, 923, 932
BlsI	GCNGC	6 cut(s)	37, 139, 321, 774, 924, 933
Bme1390I	CCNGG	2 cut(s)	434, 617
Bme18I	GGWCC	3 cut(s)	217, 229, 677
BmgT120I	GGNCC	3 cut(s)	217, 229, 677
BmiI	GGNNCC	1 cut(s)	729
BmrFI	CCNGG	2 cut(s)	434, 617
BmrI	ACTGGG	1 cut(s)	157
BmsI	GCATC	5 cut(s)	187, 610, 739, 759, 934
BmuI	ACTGGG	1 cut(s)	157
BpiI	GAAGAC	1 cut(s)	553
BpmI	CTGGAG	1 cut(s)	605
BpuEI	CTTGAG	1 cut(s)	885
Bsa29I	ATCGAT	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	100
BsaWI	WCCGGW	1 cut(s)	916
BsaXI	ACNNNNNCTCC	2 cut(s)	578, 608
Bsc4I	CCNNNNNNNGG	4 cut(s)	147, 214, 226, 712
Bse1I	ACTGG	4 cut(s)	29, 152, 378, 588
Bse21I	CCTNAGG	1 cut(s)	824
BseBI	CCWGG	2 cut(s)	434, 617
BseCI	ATCGAT	1 cut(s)	24
BseDI	CCNNGG	1 cut(s)	100
BseGI	GGATG	4 cut(s)	49, 202, 605, 625
BseLI	CCNNNNNNNGG	4 cut(s)	147, 214, 226, 712
BseMII	CTCAG	3 cut(s)	803, 815, 899
BseNI	ACTGG	4 cut(s)	29, 152, 378, 588
BseXI	GCAGC	5 cut(s)	47, 124, 784, 918, 934
BseYI	CCCAGC	1 cut(s)	257
BshFI	GGCC	2 cut(s)	326, 806
BshVI	ATCGAT	1 cut(s)	24
BsiHKAI	GWGCWC	1 cut(s)	835
BsiSI	CCGG	1 cut(s)	917
BslFI	GGGAC	1 cut(s)	791
BslI	CCNNNNNNNGG	4 cut(s)	147, 214, 226, 712
BsmAI	GTCTC	2 cut(s)	581, 903
BsmFI	GGGAC	1 cut(s)	791
BsnI	GGCC	2 cut(s)	326, 806
Bsp1286I	GDGCHC	1 cut(s)	835
Bsp143I	GATC	5 cut(s)	21, 25, 698, 709, 819
Bsp19I	CCATGG	1 cut(s)	100
BspACI	CCGC	3 cut(s)	319, 647, 775
BspANI	GGCC	2 cut(s)	326, 806
BspCNI	CTCAG	3 cut(s)	802, 816, 898
BspDI	ATCGAT	1 cut(s)	24
BspLI	GGNNCC	1 cut(s)	729
BspPI	GGATC	2 cut(s)	20, 814
BsrI	ACTGG	4 cut(s)	29, 152, 378, 588
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	5 cut(s)	21, 25, 698, 709, 819
BssNAI	GTATAC	1 cut(s)	795
BssSI	CACGAG	2 cut(s)	309, 836
BssT1I	CCWWGG	1 cut(s)	100
Bst1107I	GTATAC	1 cut(s)	795
Bst2BI	CACGAG	2 cut(s)	309, 836
Bst2UI	CCWGG	2 cut(s)	434, 617
Bst4CI	ACNGT	1 cut(s)	594
BstAPI	GCANNNNNTGC	1 cut(s)	931
BstC8I	GCNNGC	1 cut(s)	324
BstDEI	CTNAG	4 cut(s)	83, 789, 824, 885
BstDSI	CCRYGG	1 cut(s)	100
BstENI	CCTNNNNNAGG	1 cut(s)	710
BstF5I	GGATG	4 cut(s)	49, 202, 605, 625
BstKTI	GATC	5 cut(s)	24, 28, 701, 712, 822
BstMAI	GTCTC	2 cut(s)	581, 903
BstMBI	GATC	5 cut(s)	21, 25, 698, 709, 819
BstMWI	GCNNNNNNNGC	2 cut(s)	928, 931
BstNI	CCWGG	2 cut(s)	434, 617
BstNSI	RCATGY	2 cut(s)	801, 944
BstSCI	CCNGG	2 cut(s)	432, 615
BstSFI	CTRYAG	1 cut(s)	663
BstV1I	GCAGC	5 cut(s)	47, 124, 784, 918, 934
BstV2I	GAAGAC	1 cut(s)	553
BstX2I	RGATCY	2 cut(s)	698, 819
BstYI	RGATCY	2 cut(s)	698, 819
BstZ17I	GTATAC	1 cut(s)	795
Bsu15I	ATCGAT	1 cut(s)	24
Bsu36I	CCTNAGG	1 cut(s)	824
BsuI	GTATCC	1 cut(s)	733
BsuRI	GGCC	2 cut(s)	326, 806
BsuTUI	ATCGAT	1 cut(s)	24
BtgI	CCRYGG	1 cut(s)	100
BtgZI	GCGATG	1 cut(s)	854
BtsCI	GGATG	4 cut(s)	49, 202, 605, 625
BtsIMutI	CAGTG	3 cut(s)	385, 490, 590
Cac8I	GCNNGC	1 cut(s)	324
Cfr13I	GGNCC	3 cut(s)	217, 229, 677
ClaI	ATCGAT	1 cut(s)	24
CseI	GACGC	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	79
CspCI	CAANNNNNGTGG	2 cut(s)	790, 825
CviAII	CATG	8 cut(s)	101, 247, 278, 412, 460, 657, 798, 941
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	4 cut(s)	83, 789, 824, 885
DpnI	GATC	5 cut(s)	23, 27, 700, 711, 821
DpnII	GATC	5 cut(s)	21, 25, 698, 709, 819
DrdI	GACNNNNNNGTC	1 cut(s)	555
DseDI	GACNNNNNNGTC	1 cut(s)	555
Eco130I	CCWWGG	1 cut(s)	100
Eco147I	AGGCCT	1 cut(s)	806
Eco47I	GGWCC	3 cut(s)	217, 229, 677
Eco57I	CTGAAG	2 cut(s)	110, 466
Eco81I	CCTNAGG	1 cut(s)	824
EcoNI	CCTNNNNNAGG	1 cut(s)	710
EcoRII	CCWGG	2 cut(s)	432, 615
EcoT14I	CCWWGG	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	100
FaeI	CATG	8 cut(s)	104, 250, 281, 415, 463, 660, 801, 944
FaqI	GGGAC	1 cut(s)	791
FatI	CATG	8 cut(s)	100, 246, 277, 411, 459, 656, 797, 940
FauI	CCCGC	1 cut(s)	768
FblI	GTMKAC	2 cut(s)	429, 794
Fnu4HI	GCNGC	6 cut(s)	36, 138, 320, 773, 923, 932
FokI	GGATG	4 cut(s)	36, 209, 612, 632
Fsp4HI	GCNGC	6 cut(s)	36, 138, 320, 773, 923, 932
FspBI	CTAG	2 cut(s)	114, 551
GluI	GCNGC	6 cut(s)	36, 138, 320, 773, 923, 932
GsaI	CCCAGC	1 cut(s)	261
GsuI	CTGGAG	1 cut(s)	605
HaeIII	GGCC	2 cut(s)	326, 806
HapII	CCGG	1 cut(s)	917
HgaI	GACGC	1 cut(s)	263
Hin1II	CATG	8 cut(s)	104, 250, 281, 415, 463, 660, 801, 944
HinfI	GANTC	6 cut(s)	45, 407, 629, 716, 734, 787
HpaII	CCGG	1 cut(s)	917
HphI	GGTGA	3 cut(s)	89, 824, 906
Hpy166II	GTNNAC	4 cut(s)	229, 430, 786, 795
Hpy188I	TCNGA	3 cut(s)	170, 564, 739
Hpy188III	TCNNGA	5 cut(s)	338, 472, 713, 731, 823
Hpy8I	GTNNAC	4 cut(s)	229, 430, 786, 795
Hpy99I	CGWCG	1 cut(s)	561
HpyAV	CCTTC	4 cut(s)	380, 490, 564, 690
HpyCH4III	ACNGT	1 cut(s)	594
HpyCH4V	TGCA	7 cut(s)	35, 246, 299, 623, 642, 772, 801
HpyF10VI	GCNNNNNNNGC	2 cut(s)	928, 931
HpyF3I	CTNAG	4 cut(s)	83, 789, 824, 885
Hsp92II	CATG	8 cut(s)	104, 250, 281, 415, 463, 660, 801, 944
Kzo9I	GATC	5 cut(s)	21, 25, 698, 709, 819
LmnI	GCTCC	2 cut(s)	830, 919
Lsp1109I	GCAGC	5 cut(s)	47, 124, 784, 918, 934
LweI	GCATC	5 cut(s)	187, 610, 739, 759, 934
MaeI	CTAG	2 cut(s)	114, 551
MaeIII	GTNAC	2 cut(s)	485, 812
MalI	GATC	5 cut(s)	23, 27, 700, 711, 821
MboI	GATC	5 cut(s)	21, 25, 698, 709, 819
MboII	GAAGA	3 cut(s)	101, 116, 558
MfeI	CAATTG	1 cut(s)	175
MflI	RGATCY	2 cut(s)	698, 819
MhlI	GDGCHC	1 cut(s)	835
MluCI	AATT	5 cut(s)	69, 163, 175, 282, 446
MlyI	GAGTC	3 cut(s)	54, 416, 781
MmeI	TCCRAC	1 cut(s)	655
MnlI	CCTC	5 cut(s)	215, 456, 716, 819, 945
MroXI	GAANNNNTTC	1 cut(s)	479
MseI	TTAA	5 cut(s)	11, 267, 509, 891, 955
MslI	CAYNNNNRTG	3 cut(s)	102, 758, 838
MspA1I	CMGCKG	2 cut(s)	775, 931
MspI	CCGG	1 cut(s)	917
MspR9I	CCNGG	2 cut(s)	434, 617
MunI	CAATTG	1 cut(s)	175
MvaI	CCWGG	2 cut(s)	434, 617
MwoI	GCNNNNNNNGC	2 cut(s)	928, 931
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	5 cut(s)	21, 25, 698, 709, 819
NlaIII	CATG	8 cut(s)	104, 250, 281, 415, 463, 660, 801, 944
NlaIV	GGNNCC	1 cut(s)	729
NmuCI	GTSAC	2 cut(s)	485, 812
NspI	RCATGY	2 cut(s)	801, 944
OliI	CACNNNNGTG	2 cut(s)	102, 838
PceI	AGGCCT	1 cut(s)	806
PciI	ACATGT	1 cut(s)	940
PcsI	WCGNNNNNNNCGW	1 cut(s)	565
PdmI	GAANNNNTTC	1 cut(s)	479
PfeI	GAWTC	3 cut(s)	629, 716, 734
PflMI	CCANNNNNTGG	2 cut(s)	147, 226
PfoI	TCCNGGA	1 cut(s)	615
PkrI	GCNGC	6 cut(s)	37, 139, 321, 774, 924, 933
PleI	GAGTC	3 cut(s)	53, 415, 781
PpsI	GAGTC	3 cut(s)	53, 415, 781
PscI	ACATGT	1 cut(s)	940
Psp6I	CCWGG	2 cut(s)	432, 615
PspFI	CCCAGC	1 cut(s)	257
PspGI	CCWGG	2 cut(s)	432, 615
PspN4I	GGNNCC	1 cut(s)	729
PspPI	GGNCC	3 cut(s)	217, 229, 677
PsuI	RGATCY	2 cut(s)	698, 819
PvuII	CAGCTG	1 cut(s)	931
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
RseI	CAYNNNNRTG	3 cut(s)	102, 758, 838
SaqAI	TTAA	5 cut(s)	11, 267, 509, 891, 955
SatI	GCNGC	6 cut(s)	36, 138, 320, 773, 923, 932
Sau3AI	GATC	5 cut(s)	21, 25, 698, 709, 819
Sau96I	GGNCC	3 cut(s)	217, 229, 677
SchI	GAGTC	3 cut(s)	54, 416, 781
ScrFI	CCNGG	2 cut(s)	434, 617
SduI	GDGCHC	1 cut(s)	835
SetI	ASST	7 cut(s)	84, 364, 435, 520, 682, 891, 933
SfaNI	GCATC	5 cut(s)	187, 610, 739, 759, 934
SfcI	CTRYAG	1 cut(s)	663
SinI	GGWCC	3 cut(s)	217, 229, 677
SmiMI	CAYNNNNRTG	3 cut(s)	102, 758, 838
SmlI	CTYRAG	1 cut(s)	900
SmoI	CTYRAG	1 cut(s)	900
SpeI	ACTAGT	1 cut(s)	550
Sse9I	AATT	5 cut(s)	69, 163, 175, 282, 446
SseBI	AGGCCT	1 cut(s)	806
SsiI	CCGC	3 cut(s)	319, 647, 775
SspMI	CTAG	2 cut(s)	114, 551
StuI	AGGCCT	1 cut(s)	806
StyD4I	CCNGG	2 cut(s)	432, 615
StyI	CCWWGG	1 cut(s)	100
TaaI	ACNGT	1 cut(s)	594
TaqI	TCGA	2 cut(s)	24, 708
TasI	AATT	5 cut(s)	69, 163, 175, 282, 446
TauI	GCSGC	1 cut(s)	322
TfiI	GAWTC	3 cut(s)	629, 716, 734
Tru1I	TTAA	5 cut(s)	11, 267, 509, 891, 955
Tru9I	TTAA	5 cut(s)	11, 267, 509, 891, 955
TscAI	CASTG	3 cut(s)	385, 490, 597
TseFI	GTSAC	2 cut(s)	485, 812
TseI	GCWGC	5 cut(s)	35, 137, 772, 922, 931
Tsp45I	GTSAC	2 cut(s)	485, 812
TspDTI	ATGAA	5 cut(s)	285, 294, 399, 545, 551
TspRI	CASTG	3 cut(s)	385, 490, 597
Van91I	CCANNNNNTGG	2 cut(s)	147, 226
VpaK11BI	GGWCC	3 cut(s)	217, 229, 677
XagI	CCTNNNNNAGG	1 cut(s)	710
XapI	RAATTY	1 cut(s)	282
XceI	RCATGY	2 cut(s)	801, 944
XmiI	GTMKAC	2 cut(s)	429, 794
XmnI	GAANNNNTTC	1 cut(s)	479
XspI	CTAG	2 cut(s)	114, 551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.