Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002959

Physical Location & Seq

Genomic Coordinates Reverse (-)

8633409 .. 8636838

Gene Structure 3430 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTGTATGCATGATTTTAAAGTGTTTATTATTGTTGCTGTAGGTGCTGCAATATTTGATATGGAATATGCAAGATGGCTAGAAGACGACCACCGGCACATGTCGGAGCTCCGAACAGGGTTACAAGCACATTTGTCGGACAGCGATCTTCGACTAGTTGTGGACGGCTATGTTTCTCACTACGATGAAATCTTCCAGCTGAAAGGAATGGCTGCAAAATCTGATGTGTTCCACCTCATAACTGGAATGTGGACGACTCCAGCTGAACGTTGCTTCCTCTGGATGGGTGGTTTTAGACCCTCTGAGCTCATCAAGATGTTAATAGCACAGTTAGACCCACTAACAGAACAGCAATTCATGGGGATCGATAATCTGCAACAGTCCTCACAACAAGCTGAAGAGGCTCTTACTCAAGGTCTAGAGCAGCTTCATCAGTCTCTGGTCGACACCATTGCCGGCGGGCCAGTCATCGATGGCATGCAACAGATGGCCGTGGCTTTGGGCAAGCTCACCAATCTTGAAGGCTTCGTTCGCCAGGCTGATAATTTGAGACAACAAACCCTTCATCAGTTACGTCGGATATTGACAGTTCGTCAGGCAGCGAGATGCTTTCTTGTAATCGGAGAGTACTATGGACGATTAAGAGCACTTAGTTCTCTTTGGGCATCTCGACCCCGAGAGACCATGATAAGCGATGATAACTCGTGCCAAACGACGACAGACCTGCAAATGCTACAACCTTCGCAGAATCATTTCGCATCCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002237 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0071588 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1

Protein Analysis

256

Amino Acids

28.98

Weight (kDa)

5.42

Isoelectric Point (pI)

56.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DOG1	PF14144	33 - 108	3.6e-32	Seed dormancy control

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08320 AT1G08320 AT1G08320 AT1G08320 AT1G08320
fragaria_vesca	FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830 FvH4_3g24830
malus_domestica	MD03G1143600.v1.1 MD11G1164300.v1.1
prunus_persica	Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1 Prupe.6G129100_v2.0.a1
pyrus_communis	pycom03g09870 pycom11g13570
rosa_chinensis	RchiOBHm_Chr5g0044421
rosa_laevigata	RLG00000034273
rosa_multiflora	Rmu_sc0007129.1_g000013
rosa_roxburghii	Rroxscaffold_1G00036540
rosa_rugosa	Rorug05G0213900 Rorug05G0214000
rosa_samantha	Rh5AG298400 Rh5BG305700 Rh5CG332700 Rh5DG314900
rosa_wichuraiana	Rw5G027610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	732
AccI	GTMKAC	1 cut(s)	444
AciI	CCGC	1 cut(s)	459
AclI	AACGTT	1 cut(s)	268
AclWI	GGATC	1 cut(s)	371
AcoI	YGGCCR	1 cut(s)	489
AcuI	CTGAAG	1 cut(s)	417
AfaI	GTAC	1 cut(s)	629
AfiI	CCNNNNNNNGG	1 cut(s)	283
AflIII	ACRYGT	1 cut(s)	99
AgsI	TTSAA	1 cut(s)	521
AhdI	GACNNNNNGTC	1 cut(s)	591
AhlI	ACTAGT	1 cut(s)	154
AjnI	CCWGG	1 cut(s)	534
AloI	GAACNNNNNNTCC	2 cut(s)	258, 290
AluBI	AGCT	7 cut(s)	109, 199, 263, 307, 395, 427, 508
AluI	AGCT	7 cut(s)	109, 199, 263, 307, 395, 427, 508
Alw21I	GWGCWC	3 cut(s)	111, 309, 649
Alw26I	GTCTC	3 cut(s)	441, 544, 674
AlwI	GGATC	1 cut(s)	371
AlwNI	CAGNNNCTG	1 cut(s)	439
Ama87I	CYCGRG	1 cut(s)	675
AoxI	GGCC	2 cut(s)	461, 489
ApeKI	GCWGC	4 cut(s)	47, 212, 424, 599
Asp700I	GAANNNNTTC	1 cut(s)	752
AspS9I	GGNCC	1 cut(s)	461
AsuHPI	GGTGA	1 cut(s)	502
AvaI	CYCGRG	1 cut(s)	675
BanII	GRGCYC	2 cut(s)	111, 309
BauI	CACGAG	1 cut(s)	703
BbsI	GAAGAC	1 cut(s)	90
Bbv12I	GWGCWC	3 cut(s)	111, 309, 649
BbvI	GCAGC	4 cut(s)	34, 199, 436, 611
BccI	CCATC	4 cut(s)	69, 277, 467, 481
BceAI	ACGGC	2 cut(s)	181, 476
BcgI	CGANNNNNNTGC	6 cut(s)	117, 151, 434, 468, 706, 740
BciT130I	CCWGG	1 cut(s)	536
BcoDI	GTCTC	3 cut(s)	441, 544, 674
BcuI	ACTAGT	1 cut(s)	154
BfaI	CTAG	3 cut(s)	80, 155, 419
BfmI	CTRYAG	1 cut(s)	39
BfuAI	ACCTGC	1 cut(s)	732
BisI	GCNGC	4 cut(s)	48, 213, 425, 600
BlsI	GCNGC	4 cut(s)	49, 214, 426, 601
BmcAI	AGTACT	1 cut(s)	629
Bme1390I	CCNGG	1 cut(s)	536
BmeRI	GACNNNNNGTC	1 cut(s)	591
BmeT110I	CYCGRG	1 cut(s)	675
BmgT120I	GGNCC	1 cut(s)	461
BmrFI	CCNGG	1 cut(s)	536
BmsI	GCATC	2 cut(s)	596, 674
BpiI	GAAGAC	1 cut(s)	90
BpmI	CTGGAG	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	396
Bsa29I	ATCGAT	2 cut(s)	366, 471
BsaI	GGTCTC	1 cut(s)	674
BsaJI	CCNNGG	1 cut(s)	492
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
Bse118I	RCCGGY	2 cut(s)	93, 455
Bse1I	ACTGG	2 cut(s)	247, 464
Bse3DI	GCAATG	1 cut(s)	450
BseBI	CCWGG	1 cut(s)	536
BseCI	ATCGAT	2 cut(s)	366, 471
BseDI	CCNNGG	1 cut(s)	492
BseGI	GGATG	2 cut(s)	288, 758
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	1 cut(s)	294
BseNI	ACTGG	2 cut(s)	247, 464
BseXI	GCAGC	4 cut(s)	34, 199, 436, 611
BshFI	GGCC	2 cut(s)	463, 491
BshVI	ATCGAT	2 cut(s)	366, 471
BsiHKAI	GWGCWC	3 cut(s)	111, 309, 649
BsiHKCI	CYCGRG	1 cut(s)	675
BsiSI	CCGG	2 cut(s)	94, 456
BslI	CCNNNNNNNGG	1 cut(s)	283
BsmAI	GTCTC	3 cut(s)	441, 544, 674
BsnI	GGCC	2 cut(s)	463, 491
Bso31I	GGTCTC	1 cut(s)	674
BsoBI	CYCGRG	1 cut(s)	675
Bsp1286I	GDGCHC	3 cut(s)	111, 309, 649
Bsp143I	GATC	2 cut(s)	145, 363
BspACI	CCGC	1 cut(s)	459
BspANI	GGCC	2 cut(s)	463, 491
BspCNI	CTCAG	1 cut(s)	295
BspDI	ATCGAT	2 cut(s)	366, 471
BspMI	ACCTGC	1 cut(s)	732
BspPI	GGATC	1 cut(s)	371
BspTNI	GGTCTC	1 cut(s)	674
BsrDI	GCAATG	1 cut(s)	450
BsrFI	RCCGGY	2 cut(s)	93, 455
BsrI	ACTGG	2 cut(s)	247, 464
BssAI	RCCGGY	2 cut(s)	93, 455
BssECI	CCNNGG	1 cut(s)	492
BssMI	GATC	2 cut(s)	145, 363
BssSI	CACGAG	1 cut(s)	703
Bst2BI	CACGAG	1 cut(s)	703
Bst2UI	CCWGG	1 cut(s)	536
Bst4CI	ACNGT	3 cut(s)	330, 381, 589
Bst6I	CTCTTC	1 cut(s)	393
BstC8I	GCNNGC	4 cut(s)	457, 461, 479, 506
BstDEI	CTNAG	2 cut(s)	303, 650
BstDSI	CCRYGG	1 cut(s)	492
BstF5I	GGATG	2 cut(s)	288, 758
BstKTI	GATC	2 cut(s)	148, 366
BstMAI	GTCTC	3 cut(s)	441, 544, 674
BstMBI	GATC	2 cut(s)	145, 363
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 401, 531
BstNI	CCWGG	1 cut(s)	536
BstNSI	RCATGY	2 cut(s)	103, 481
BstSCI	CCNGG	1 cut(s)	534
BstSFI	CTRYAG	1 cut(s)	39
BstV1I	GCAGC	4 cut(s)	34, 199, 436, 611
BstV2I	GAAGAC	1 cut(s)	90
Bsu15I	ATCGAT	2 cut(s)	366, 471
BsuRI	GGCC	2 cut(s)	463, 491
BsuTUI	ATCGAT	2 cut(s)	366, 471
BtgI	CCRYGG	1 cut(s)	492
BtgZI	GCGATG	1 cut(s)	708
BtsCI	GGATG	2 cut(s)	288, 758
BveI	ACCTGC	1 cut(s)	732
Cac8I	GCNNGC	4 cut(s)	457, 461, 479, 506
CaiI	CAGNNNCTG	1 cut(s)	439
Cfr10I	RCCGGY	2 cut(s)	93, 455
Cfr13I	GGNCC	1 cut(s)	461
ClaI	ATCGAT	2 cut(s)	366, 471
Csp6I	GTAC	1 cut(s)	628
CviAII	CATG	5 cut(s)	11, 100, 358, 478, 685
CviQI	GTAC	1 cut(s)	628
DdeI	CTNAG	2 cut(s)	303, 650
DpnI	GATC	2 cut(s)	147, 365
DpnII	GATC	2 cut(s)	145, 363
DraI	TTTAAA	1 cut(s)	19
DriI	GACNNNNNGTC	1 cut(s)	591
EaeI	YGGCCR	1 cut(s)	489
Eam1104I	CTCTTC	1 cut(s)	393
Eam1105I	GACNNNNNGTC	1 cut(s)	591
EarI	CTCTTC	1 cut(s)	393
Ecl136II	GAGCTC	2 cut(s)	109, 307
Eco24I	GRGCYC	2 cut(s)	111, 309
Eco31I	GGTCTC	1 cut(s)	674
Eco53kI	GAGCTC	2 cut(s)	109, 307
Eco57I	CTGAAG	1 cut(s)	417
Eco88I	CYCGRG	1 cut(s)	675
EcoICRI	GAGCTC	2 cut(s)	109, 307
EcoRII	CCWGG	1 cut(s)	534
EcoT22I	ATGCAT	1 cut(s)	12
EcoT38I	GRGCYC	2 cut(s)	111, 309
FaeI	CATG	5 cut(s)	14, 103, 361, 481, 688
FalI	AAGNNNNNCTT	2 cut(s)	390, 422
FatI	CATG	5 cut(s)	10, 99, 357, 477, 684
FauI	CCCGC	1 cut(s)	452
FblI	GTMKAC	1 cut(s)	444
Fnu4HI	GCNGC	4 cut(s)	48, 213, 425, 600
FokI	GGATG	2 cut(s)	295, 745
FriOI	GRGCYC	2 cut(s)	111, 309
Fsp4HI	GCNGC	4 cut(s)	48, 213, 425, 600
FspBI	CTAG	3 cut(s)	80, 155, 419
GluI	GCNGC	4 cut(s)	48, 213, 425, 600
GsuI	CTGGAG	1 cut(s)	243
HaeIII	GGCC	2 cut(s)	463, 491
HapII	CCGG	2 cut(s)	94, 456
Hin1II	CATG	5 cut(s)	14, 103, 361, 481, 688
HincII	GTYRAC	1 cut(s)	445
HindII	GTYRAC	1 cut(s)	445
HinfI	GANTC	2 cut(s)	256, 748
HpaII	CCGG	2 cut(s)	94, 456
HphI	GGTGA	1 cut(s)	502
Hpy166II	GTNNAC	3 cut(s)	163, 252, 445
Hpy188I	TCNGA	7 cut(s)	106, 113, 139, 223, 304, 579, 623
Hpy188III	TCNNGA	5 cut(s)	280, 313, 419, 518, 669
Hpy8I	GTNNAC	3 cut(s)	163, 252, 445
Hpy99I	CGWCG	2 cut(s)	579, 718
HpyAV	CCTTC	3 cut(s)	515, 572, 750
HpyCH4III	ACNGT	3 cut(s)	330, 381, 589
HpyCH4IV	ACGT	2 cut(s)	268, 574
HpyCH4V	TGCA	7 cut(s)	10, 50, 71, 215, 376, 481, 727
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 401, 531
HpyF3I	CTNAG	2 cut(s)	303, 650
HpySE526I	ACGT	2 cut(s)	268, 574
Hsp92II	CATG	5 cut(s)	14, 103, 361, 481, 688
KroI	GCCGGC	1 cut(s)	455
KroNI	GCCGGC	1 cut(s)	457
Kzo9I	GATC	2 cut(s)	145, 363
LmnI	GCTCC	2 cut(s)	106, 114
Lsp1109I	GCAGC	4 cut(s)	34, 199, 436, 611
LweI	GCATC	2 cut(s)	596, 674
MaeI	CTAG	3 cut(s)	80, 155, 419
MaeII	ACGT	2 cut(s)	268, 574
MaeIII	GTNAC	2 cut(s)	120, 570
MalI	GATC	2 cut(s)	147, 365
MboI	GATC	2 cut(s)	145, 363
MboII	GAAGA	4 cut(s)	95, 140, 184, 410
MhlI	GDGCHC	3 cut(s)	111, 309, 649
MluCI	AATT	2 cut(s)	353, 544
MlyI	GAGTC	1 cut(s)	250
MmeI	TCCRAC	3 cut(s)	84, 117, 557
MnlI	CCTC	5 cut(s)	245, 287, 310, 394, 394
Mph1103I	ATGCAT	1 cut(s)	12
MroNI	GCCGGC	1 cut(s)	455
MroXI	GAANNNNTTC	1 cut(s)	752
MseI	TTAA	3 cut(s)	18, 320, 641
MslI	CAYNNNNRTG	2 cut(s)	183, 314
MspA1I	CMGCKG	2 cut(s)	199, 263
MspI	CCGG	2 cut(s)	94, 456
MspR9I	CCNGG	1 cut(s)	536
MvaI	CCWGG	1 cut(s)	536
MwoI	GCNNNNNNNGC	3 cut(s)	44, 401, 531
NaeI	GCCGGC	1 cut(s)	457
NdeII	GATC	2 cut(s)	145, 363
NgoMIV	GCCGGC	1 cut(s)	455
NlaIII	CATG	5 cut(s)	14, 103, 361, 481, 688
NsiI	ATGCAT	1 cut(s)	12
NspI	RCATGY	2 cut(s)	103, 481
PaeI	GCATGC	1 cut(s)	481
PciI	ACATGT	1 cut(s)	99
PcsI	WCGNNNNNNNCGW	1 cut(s)	710
PdiI	GCCGGC	1 cut(s)	457
PdmI	GAANNNNTTC	1 cut(s)	752
PfeI	GAWTC	1 cut(s)	748
PkrI	GCNGC	4 cut(s)	49, 214, 426, 601
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
PscI	ACATGT	1 cut(s)	99
Psp124BI	GAGCTC	2 cut(s)	111, 309
Psp1406I	AACGTT	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	534
PspGI	CCWGG	1 cut(s)	534
PspPI	GGNCC	1 cut(s)	461
PstNI	CAGNNNCTG	1 cut(s)	439
PvuII	CAGCTG	2 cut(s)	199, 263
RsaI	GTAC	1 cut(s)	629
RsaNI	GTAC	1 cut(s)	628
RseI	CAYNNNNRTG	2 cut(s)	183, 314
SacI	GAGCTC	2 cut(s)	111, 309
SalI	GTCGAC	1 cut(s)	443
SaqAI	TTAA	3 cut(s)	18, 320, 641
SatI	GCNGC	4 cut(s)	48, 213, 425, 600
Sau3AI	GATC	2 cut(s)	145, 363
Sau96I	GGNCC	1 cut(s)	461
ScaI	AGTACT	1 cut(s)	629
SchI	GAGTC	1 cut(s)	250
ScrFI	CCNGG	1 cut(s)	536
SduI	GDGCHC	3 cut(s)	111, 309, 649
SfaNI	GCATC	2 cut(s)	596, 674
SfcI	CTRYAG	1 cut(s)	39
SmiMI	CAYNNNNRTG	2 cut(s)	183, 314
SmlI	CTYRAG	1 cut(s)	411
SmoI	CTYRAG	1 cut(s)	411
SpeI	ACTAGT	1 cut(s)	154
SphI	GCATGC	1 cut(s)	481
Sse9I	AATT	2 cut(s)	353, 544
SsiI	CCGC	1 cut(s)	459
SspI	AATATT	1 cut(s)	54
SspMI	CTAG	3 cut(s)	80, 155, 419
SstI	GAGCTC	2 cut(s)	111, 309
StyD4I	CCNGG	1 cut(s)	534
TaaI	ACNGT	3 cut(s)	330, 381, 589
TaiI	ACGT	2 cut(s)	271, 577
TaqI	TCGA	5 cut(s)	151, 366, 444, 471, 670
TasI	AATT	2 cut(s)	353, 544
TatI	WGTACW	1 cut(s)	627
TfiI	GAWTC	1 cut(s)	748
Tru1I	TTAA	3 cut(s)	18, 320, 641
Tru9I	TTAA	3 cut(s)	18, 320, 641
TseI	GCWGC	4 cut(s)	47, 212, 424, 599
TspDTI	ATGAA	4 cut(s)	201, 346, 419, 554
XbaI	TCTAGA	1 cut(s)	418
XceI	RCATGY	2 cut(s)	103, 481
XcmI	CCANNNNNNNNNTGG	1 cut(s)	239
XmiI	GTMKAC	1 cut(s)	444
XmnI	GAANNNNTTC	1 cut(s)	752
XspI	CTAG	3 cut(s)	80, 155, 419
ZrmI	AGTACT	1 cut(s)	629
Zsp2I	ATGCAT	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.