Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007213

Physical Location & Seq

Genomic Coordinates Reverse (-)

14131246 .. 14134923

Gene Structure 3678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGCAGCCAAAATCTGAAGCTGAAAATCGACTACATCCTCGTACCATCCCACCAAGCAGTGTTTATTCGGAACCATGGTGGCAGAGTGTTGGATATAATCCCATCTCCCCAACTGGAACTGGGAGGAATGCATCCAACTCATCTTCGTTAGAATGCCCAAATGGTAGGTCAGAGTCTAATGATGATCGATCTCTGTCCAATGATGAGGCAAATAAAGATGATGATGATACTGCCAAAGATTCACATATTACATCTCCAAGATCAGCTGGAAATTATAGGCAAGACCACCACAATGTAAAGCATGCTGGATCCAGTGTACCCACAGTGCGTGATGATTGCCTTGTGCAACCACCACAGCTTGAACTTGTTGGTCACTCTATTGCTTGTGCTTCAAATCCTTATCAGGATCCTTATTATGGTGGAATGATGGCAGCTTATGGACATCCACCTTTGGGTTATCCTCCTTTTCTTGGAATGCCGCATGCTAGAATGCCATTGCCTCTTGAGATGGCACAGGAGCCTGTGTATGTAAATGCAAAACAATACCAAGGTATTCTCAGGCGAAGACAGGCACGTGCAAAAGCAGAACTTGAAAGGAAGCTAATAAAAGTCAGGAAGCCGTATCTTCATGAATCACGACATCAACATGCTATGAGAAGGGCGAGAGGTACTGGAGGACGTTTTGCAAAGAAACCTAATGGTGATACTTCAAACAGCACTGGACAAGAAAAGGGTACAAGTTCTGGTCCAGCCCACTCATCACAATCTGGCAGTTCATCAGGTTCAGAACCCTTTCCGTCAGATTCTGCTGAAACATGGAATTCCCCCAATAGTCAACGGGAAGCAAGAGGTTCCCAAGTGCATGATGCGTATGTAGCTCACAATTATGCAAATGGTAGTGGCTGCTACCAGCCCCATGGTGGCTTGCAGGCTTCAATATATCCTTCATACTCGGGCAAGAGAGGGGAAGAAGGAGATTGTACAGGCCAGCAACGGGGAAGCATATCTTCGAACCAGGCCTCACAGAGGCGTCTTGCCATCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016602 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032991 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048229 GO:0048316 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090575 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFB_NFYA

Protein Analysis

349

Amino Acids

37.97

Weight (kDa)

8.85

Isoelectric Point (pI)

60.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFB_NFYA	PF02045	173 - 228	8.2e-27	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20910 AT5G12840 AT5G12840 AT5G12840 AT5G12840 AT5G12840
fragaria_vesca	FvH4_3g28780 FvH4_3g28780 FvH4_3g28780
malus_domestica	MD03G1174600.v1.1 MD11G1192400.v1.1
prunus_persica	Prupe.4G249900_v2.0.a1 Prupe.4G249900_v2.0.a1
pyrus_communis	pycom03g13200 pycom11g16820
rosa_chinensis	RchiOBHm_Chr5g0052231
rosa_laevigata	RLG00000034835
rosa_multiflora	Rmu_sc0003759.1_g000007
rosa_roxburghii	Rroxscaffold_1G00028070
rosa_rugosa	Rorug05G0273700
rosa_samantha	Rh5AG346500 Rh5BG357100 Rh5CG382500 Rh5DG372500
rosa_wichuraiana	Rw5G032720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	479
AclWI	GGATC	4 cut(s)	303, 316, 401, 414
AcsI	RAATTY	1 cut(s)	820
AcuI	CTGAAG	1 cut(s)	36
AcvI	CACGTG	1 cut(s)	575
AcyI	GRCGYC	1 cut(s)	1030
AfaI	GTAC	5 cut(s)	43, 318, 670, 736, 982
AfiI	CCNNNNNNNGG	6 cut(s)	416, 452, 470, 920, 994, 1026
AgsI	TTSAA	5 cut(s)	362, 393, 593, 711, 936
AjnI	CCWGG	1 cut(s)	1014
AluBI	AGCT	6 cut(s)	20, 266, 358, 434, 601, 878
AluI	AGCT	6 cut(s)	20, 266, 358, 434, 601, 878
AlwI	GGATC	4 cut(s)	303, 316, 401, 414
AlwNI	CAGNNNCTG	1 cut(s)	806
Ama87I	CYCGRG	1 cut(s)	952
AoxI	GGCC	2 cut(s)	985, 1017
ApeKI	GCWGC	3 cut(s)	4, 431, 903
ApoI	RAATTY	1 cut(s)	820
ArsI	GACNNNNNNTTYG	2 cut(s)	152, 184
Asp700I	GAANNNNTTC	1 cut(s)	792
AspS9I	GGNCC	1 cut(s)	746
AsuHPI	GGTGA	1 cut(s)	713
AsuII	TTCGAA	1 cut(s)	1010
AvaI	CYCGRG	1 cut(s)	952
AvaII	GGWCC	1 cut(s)	746
BamHI	GGATCC	2 cut(s)	308, 406
BbrPI	CACGTG	1 cut(s)	575
BbsI	GAAGAC	1 cut(s)	571
BbvI	GCAGC	3 cut(s)	16, 443, 890
BccI	CCATC	5 cut(s)	53, 110, 421, 502, 1046
BceAI	ACGGC	1 cut(s)	604
BciT130I	CCWGG	1 cut(s)	1016
BfaI	CTAG	1 cut(s)	486
BisI	GCNGC	4 cut(s)	5, 432, 479, 904
BlsI	GCNGC	4 cut(s)	6, 433, 480, 905
Bme1390I	CCNGG	1 cut(s)	1016
Bme18I	GGWCC	1 cut(s)	746
BmeT110I	CYCGRG	1 cut(s)	952
BmgT120I	GGNCC	1 cut(s)	746
BmiI	GGNNCC	5 cut(s)	72, 310, 408, 519, 853
BmrFI	CCNGG	1 cut(s)	1016
BmrI	ACTGGG	1 cut(s)	129
BmsI	GCATC	2 cut(s)	140, 856
BmuI	ACTGGG	1 cut(s)	129
BpiI	GAAGAC	1 cut(s)	571
BpmI	CTGGAG	1 cut(s)	693
Bpu14I	TTCGAA	1 cut(s)	1010
BpuEI	CTTGAG	1 cut(s)	524
Bsa29I	ATCGAT	1 cut(s)	187
BsaAI	YACGTR	1 cut(s)	575
BsaHI	GRCGYC	1 cut(s)	1030
BsaJI	CCNNGG	3 cut(s)	74, 547, 916
BsaXI	ACNNNNNCTCC	2 cut(s)	509, 539
Bsc4I	CCNNNNNNNGG	6 cut(s)	416, 452, 470, 920, 994, 1026
Bse1I	ACTGG	6 cut(s)	118, 124, 312, 676, 724, 1042
Bse3DI	GCAATG	1 cut(s)	494
BseBI	CCWGG	1 cut(s)	1016
BseCI	ATCGAT	1 cut(s)	187
BseDI	CCNNGG	3 cut(s)	74, 547, 916
BseGI	GGATG	5 cut(s)	34, 45, 131, 442, 1038
BseLI	CCNNNNNNNGG	6 cut(s)	416, 452, 470, 920, 994, 1026
BseMI	GCAATG	1 cut(s)	494
BseMII	CTCAG	1 cut(s)	571
BseNI	ACTGG	6 cut(s)	118, 124, 312, 676, 724, 1042
BseXI	GCAGC	3 cut(s)	16, 443, 890
BshFI	GGCC	2 cut(s)	987, 1019
BshVI	ATCGAT	1 cut(s)	187
BsiHKCI	CYCGRG	1 cut(s)	952
BslI	CCNNNNNNNGG	6 cut(s)	416, 452, 470, 920, 994, 1026
BsmI	GAATGC	4 cut(s)	133, 158, 480, 495
BsnI	GGCC	2 cut(s)	987, 1019
BsoBI	CYCGRG	1 cut(s)	952
Bsp119I	TTCGAA	1 cut(s)	1010
Bsp1407I	TGTACA	1 cut(s)	980
Bsp143I	GATC	5 cut(s)	184, 188, 260, 308, 406
Bsp19I	CCATGG	2 cut(s)	74, 916
BspACI	CCGC	1 cut(s)	479
BspANI	GGCC	2 cut(s)	987, 1019
BspCNI	CTCAG	1 cut(s)	570
BspDI	ATCGAT	1 cut(s)	187
BspHI	TCATGA	1 cut(s)	628
BspLI	GGNNCC	5 cut(s)	72, 310, 408, 519, 853
BspPI	GGATC	4 cut(s)	303, 316, 401, 414
BspT104I	TTCGAA	1 cut(s)	1010
BsrDI	GCAATG	1 cut(s)	494
BsrGI	TGTACA	1 cut(s)	980
BsrI	ACTGG	6 cut(s)	118, 124, 312, 676, 724, 1042
BssECI	CCNNGG	3 cut(s)	74, 547, 916
BssMI	GATC	5 cut(s)	184, 188, 260, 308, 406
BssNI	GRCGYC	1 cut(s)	1030
BssT1I	CCWWGG	3 cut(s)	74, 547, 916
Bst2UI	CCWGG	1 cut(s)	1016
Bst4CI	ACNGT	1 cut(s)	325
BstACI	GRCGYC	1 cut(s)	1030
BstAUI	TGTACA	1 cut(s)	980
BstBAI	YACGTR	1 cut(s)	575
BstBI	TTCGAA	1 cut(s)	1010
BstC8I	GCNNGC	5 cut(s)	303, 483, 926, 930, 989
BstDEI	CTNAG	1 cut(s)	557
BstDSI	CCRYGG	2 cut(s)	74, 916
BstENI	CCTNNNNNAGG	1 cut(s)	1024
BstF5I	GGATG	5 cut(s)	34, 45, 131, 442, 1038
BstKTI	GATC	5 cut(s)	187, 191, 263, 311, 409
BstMBI	GATC	5 cut(s)	184, 188, 260, 308, 406
BstMWI	GCNNNNNNNGC	1 cut(s)	875
BstNI	CCWGG	1 cut(s)	1016
BstNSI	RCATGY	3 cut(s)	305, 485, 650
BstSCI	CCNGG	1 cut(s)	1014
BstV1I	GCAGC	3 cut(s)	16, 443, 890
BstV2I	GAAGAC	1 cut(s)	571
BstX2I	RGATCY	2 cut(s)	308, 406
BstXI	CCANNNNNNTGG	1 cut(s)	917
BstYI	RGATCY	2 cut(s)	308, 406
Bsu15I	ATCGAT	1 cut(s)	187
BsuRI	GGCC	2 cut(s)	987, 1019
BsuTUI	ATCGAT	1 cut(s)	187
BtgI	CCRYGG	2 cut(s)	74, 916
BtsCI	GGATG	5 cut(s)	34, 45, 131, 442, 1038
BtsI	GCAGTG	1 cut(s)	64
BtsIMutI	CAGTG	4 cut(s)	64, 319, 330, 717
Cac8I	GCNNGC	5 cut(s)	303, 483, 926, 930, 989
CaiI	CAGNNNCTG	1 cut(s)	806
CciI	TCATGA	1 cut(s)	628
Cfr13I	GGNCC	1 cut(s)	746
ClaI	ATCGAT	1 cut(s)	187
CseI	GACGC	1 cut(s)	1019
Csp6I	GTAC	5 cut(s)	42, 317, 669, 735, 981
CviAII	CATG	8 cut(s)	75, 302, 482, 629, 647, 816, 863, 917
CviQI	GTAC	5 cut(s)	42, 317, 669, 735, 981
DdeI	CTNAG	1 cut(s)	557
DpnI	GATC	5 cut(s)	186, 190, 262, 310, 408
DpnII	GATC	5 cut(s)	184, 188, 260, 308, 406
Eco130I	CCWWGG	3 cut(s)	74, 547, 916
Eco147I	AGGCCT	1 cut(s)	1019
Eco47I	GGWCC	1 cut(s)	746
Eco57I	CTGAAG	1 cut(s)	36
Eco72I	CACGTG	1 cut(s)	575
Eco88I	CYCGRG	1 cut(s)	952
EcoNI	CCTNNNNNAGG	1 cut(s)	1024
EcoRI	GAATTC	1 cut(s)	820
EcoRII	CCWGG	1 cut(s)	1014
EcoT14I	CCWWGG	3 cut(s)	74, 547, 916
EcoT22I	ATGCAT	1 cut(s)	133
ErhI	CCWWGG	3 cut(s)	74, 547, 916
FaeI	CATG	8 cut(s)	78, 305, 485, 632, 650, 819, 866, 920
FalI	AAGNNNNNCTT	4 cut(s)	573, 605, 991, 1023
FatI	CATG	8 cut(s)	74, 301, 481, 628, 646, 815, 862, 916
Fnu4HI	GCNGC	4 cut(s)	5, 432, 479, 904
FokI	GGATG	5 cut(s)	21, 32, 118, 429, 1025
Fsp4HI	GCNGC	4 cut(s)	5, 432, 479, 904
FspBI	CTAG	1 cut(s)	486
GluI	GCNGC	4 cut(s)	5, 432, 479, 904
GsuI	CTGGAG	1 cut(s)	693
HaeIII	GGCC	2 cut(s)	987, 1019
HgaI	GACGC	1 cut(s)	1019
Hin1I	GRCGYC	1 cut(s)	1030
Hin1II	CATG	8 cut(s)	78, 305, 485, 632, 650, 819, 866, 920
HincII	GTYRAC	1 cut(s)	836
HindII	GTYRAC	1 cut(s)	836
HinfI	GANTC	4 cut(s)	173, 239, 632, 803
HphI	GGTGA	1 cut(s)	713
Hpy166II	GTNNAC	2 cut(s)	317, 836
Hpy188I	TCNGA	5 cut(s)	16, 70, 172, 787, 802
Hpy188III	TCNNGA	5 cut(s)	404, 503, 613, 629, 636
Hpy8I	GTNNAC	2 cut(s)	317, 836
HpyAV	CCTTC	3 cut(s)	651, 954, 965
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4IV	ACGT	2 cut(s)	574, 679
HpyCH4V	TGCA	9 cut(s)	4, 131, 346, 536, 578, 686, 862, 890, 928
HpyF10VI	GCNNNNNNNGC	1 cut(s)	875
HpyF3I	CTNAG	1 cut(s)	557
HpySE526I	ACGT	2 cut(s)	574, 679
Hsp92I	GRCGYC	1 cut(s)	1030
Hsp92II	CATG	8 cut(s)	78, 305, 485, 632, 650, 819, 866, 920
Kzo9I	GATC	5 cut(s)	184, 188, 260, 308, 406
LmnI	GCTCC	1 cut(s)	517
Lsp1109I	GCAGC	3 cut(s)	16, 443, 890
LweI	GCATC	2 cut(s)	140, 856
MaeI	CTAG	1 cut(s)	486
MaeII	ACGT	2 cut(s)	574, 679
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	5 cut(s)	186, 190, 262, 310, 408
MboI	GATC	5 cut(s)	184, 188, 260, 308, 406
MboII	GAAGA	5 cut(s)	135, 576, 617, 980, 999
MflI	RGATCY	2 cut(s)	308, 406
MluCI	AATT	3 cut(s)	271, 820, 883
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	2 cut(s)	70, 159
Mph1103I	ATGCAT	1 cut(s)	133
MroXI	GAANNNNTTC	1 cut(s)	792
MslI	CAYNNNNRTG	3 cut(s)	291, 645, 885
MspA1I	CMGCKG	1 cut(s)	266
MspR9I	CCNGG	1 cut(s)	1016
Mva1269I	GAATGC	4 cut(s)	133, 158, 480, 495
MvaI	CCWGG	1 cut(s)	1016
MwoI	GCNNNNNNNGC	1 cut(s)	875
NcoI	CCATGG	2 cut(s)	74, 916
NdeII	GATC	5 cut(s)	184, 188, 260, 308, 406
NlaIII	CATG	8 cut(s)	78, 305, 485, 632, 650, 819, 866, 920
NlaIV	GGNNCC	5 cut(s)	72, 310, 408, 519, 853
NmuCI	GTSAC	1 cut(s)	371
NsiI	ATGCAT	1 cut(s)	133
NspI	RCATGY	3 cut(s)	305, 485, 650
NspV	TTCGAA	1 cut(s)	1010
PaeI	GCATGC	2 cut(s)	305, 485
PagI	TCATGA	1 cut(s)	628
PceI	AGGCCT	1 cut(s)	1019
PctI	GAATGC	4 cut(s)	133, 158, 480, 495
PdmI	GAANNNNTTC	1 cut(s)	792
PfeI	GAWTC	3 cut(s)	239, 632, 803
PkrI	GCNGC	4 cut(s)	6, 433, 480, 905
PleI	GAGTC	1 cut(s)	181
PmaCI	CACGTG	1 cut(s)	575
PmlI	CACGTG	1 cut(s)	575
PpsI	GAGTC	1 cut(s)	181
Ppu21I	YACGTR	1 cut(s)	575
Psp6I	CCWGG	1 cut(s)	1014
PspCI	CACGTG	1 cut(s)	575
PspGI	CCWGG	1 cut(s)	1014
PspN4I	GGNNCC	5 cut(s)	72, 310, 408, 519, 853
PspPI	GGNCC	1 cut(s)	746
PstNI	CAGNNNCTG	1 cut(s)	806
PsuI	RGATCY	2 cut(s)	308, 406
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	5 cut(s)	43, 318, 670, 736, 982
RsaNI	GTAC	5 cut(s)	42, 317, 669, 735, 981
RseI	CAYNNNNRTG	3 cut(s)	291, 645, 885
SatI	GCNGC	4 cut(s)	5, 432, 479, 904
Sau3AI	GATC	5 cut(s)	184, 188, 260, 308, 406
Sau96I	GGNCC	1 cut(s)	746
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	1016
SfaNI	GCATC	2 cut(s)	140, 856
SfuI	TTCGAA	1 cut(s)	1010
SinI	GGWCC	1 cut(s)	746
SmiMI	CAYNNNNRTG	3 cut(s)	291, 645, 885
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
SphI	GCATGC	2 cut(s)	305, 485
Sse9I	AATT	3 cut(s)	271, 820, 883
SseBI	AGGCCT	1 cut(s)	1019
SsiI	CCGC	1 cut(s)	479
SspMI	CTAG	1 cut(s)	486
StuI	AGGCCT	1 cut(s)	1019
StyD4I	CCNGG	1 cut(s)	1014
StyI	CCWWGG	3 cut(s)	74, 547, 916
TaaI	ACNGT	1 cut(s)	325
TaiI	ACGT	2 cut(s)	577, 682
TaqI	TCGA	3 cut(s)	28, 187, 1010
TasI	AATT	3 cut(s)	271, 820, 883
TatI	WGTACW	1 cut(s)	980
TauI	GCSGC	1 cut(s)	481
TfiI	GAWTC	3 cut(s)	239, 632, 803
TscAI	CASTG	4 cut(s)	64, 319, 330, 724
TseFI	GTSAC	1 cut(s)	371
TseI	GCWGC	3 cut(s)	4, 431, 903
Tsp45I	GTSAC	1 cut(s)	371
TspDTI	ATGAA	4 cut(s)	617, 645, 765, 936
TspGWI	ACGGA	1 cut(s)	786
TspRI	CASTG	4 cut(s)	64, 319, 330, 724
VpaK11BI	GGWCC	1 cut(s)	746
XagI	CCTNNNNNAGG	1 cut(s)	1024
XapI	RAATTY	1 cut(s)	820
XceI	RCATGY	3 cut(s)	305, 485, 650
XcmI	CCANNNNNNNNNTGG	1 cut(s)	917
XmnI	GAANNNNTTC	1 cut(s)	792
XspI	CTAG	1 cut(s)	486
Zsp2I	ATGCAT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.