Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0011252

Physical Location & Seq

Genomic Coordinates Reverse (-)

14402639 .. 14409413

Gene Structure 6775 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2550 bp

ATGGCGGACACTCCGAAGAGGGTCCTGCAGTCCCCCAAGAAATCCAAGCGTTCCAATTCCAAGCCACCGCCTCTAACTCCCACAACTCCACAAACCCCGACTCCCCGCCGGTCGGCTCGCCGGGCCTCGCTGCAGGCAGGTTCCGCCACTCCCCAGAAGCTATTTGAAGACTCGCCGAAGAAAGACGTGACGCCTCAACTTGAATTGGGAAATGATTCGGGCAAAACACGAAGAAAAGGGGGAAATGCGGGAACTGCAAAAACCCCAAAATCTGCTGAGAAGGGCAAGATGTGGAAGGATAAAGAGGAGGCTGATTTGACCGAGGTTGAAATTTCAATATCTCCTGTGACTCCAGGGCAGTCGGAGATTAAGAAGAGGAAAAGGGAGCAGAAAAGCACGGTGGTTACGCGTTCTAGGGCCTCGAAAAATGTCAATTTTGAGGAGAGCATGAGCGTTAAGTCAGTGCCGAAAAGACGGGTTTATTATAAGAAGGTTGTGTATGATGGGGGTGAGTTTGAGGTGGGGGATAACGTGTATGTGAGGAGGAGAGAGGATGCGAGTTCGGATGAGGATTTGGATGAAGTGGAGGAATGTAGGGTTTGCTTTAAGTCTGGGAAGGTTTTGATGATTGAGTGTGATGATTGCTTAGGTGGGTTTCATTTGAAATGCTTGAAACCTCCACTGAAGGATGTTCCTGAAGGGGATTGGATTTGCTGGTTTTGTGAGGCTCGCAAGTTGGGTAGAAAGGTCCAGCTTCCGACACCTCCAGAGGGGAAGAAGCTGGTTAGAACATTGAGGGAGAAGCTTCTCTCCAGTGATTTGTGGGCTGCCCACATTGAAAGCATATGGAAAGAAGTAGATGGAAGCTATTGGTGTCGGGTACGTTGGTATATAATCCCAGAAGAGACTGCAACTGGAAGACAACCTCATAATTTGCGGAGAGAAATTTATCGCACAAATGATTTTGCTGACATTGAGATGGAATCTATTCTTCGACATTGTTTTGTGATGAATCCTAAAGAATATGCCAAAGCAAGCAATGAAGGGGATGATGTTTTTCTATGCGAATATGAATATGATATTCATTGGCACAGCTTCAAGCGTCTTGCTGAAGTTGATGACGGTGAAGGGGAGGATGATGAAGCTGGAAGTGATGAAGATTGGAAAGTTGGCAAAGACTTGGACTTTGATTCAGAAGACATGGACTATGACGAGGAAAGCATAAAAAGTATACTAGCTAAACCATTTCGAGCTCATGAGTTGGCTGCAAATTCACAGAAGGGGCGGTTCTTTGGACTTCAAAAGATAGGAATGAAGAAAATCCCAGAGCACGTAAGATGCCACAAGCAGACTGATCTTGAAATAGCAAAGGCAGCACTTCTGCTGTCATCCTTGCCTAAGTCTTTGCCTTGCAGGGATAAAGAAATGTTGGAAATAACTGCATTTATCAAAGATTCTATCTCTGACGATAAGTGTTTGGGACGTTGCCTGTACATTCATGGTGTTCCTGGAACTGGCAAAACAATGAGTGTTCTAGCAGTAATGAAGAATCTAAGGTCTGAAGTTGATGCCGGAAGTATAAGACCCTACTGTTTTGTGGAGATAAATGGTCTAAAGTTGGCATCACCAGAGAACATCTACAGGGTTATATATGAAGCGTTAAGTGGGCACAGAGTTGGTTGGAAAAAGGCTCTCCACTTGCTAAATGAGCGGTTCTCTGAAGGCAAGAAAATTGGTAAAGAAGATGACAAGCCTTGTATTCTTCTCATTGATGAACTCGATCTTCTCCTGACCAGAAACCAGTCGGTTCTATACAACATTCTTGACTGGCCTACTAAGCCACACTCAAAGTTAGTTGTAATAGGCATAGCAAATACCATGGATCTTCCTGAGAAGTTGCTTCCTCGTATTTCAAGTCGTATGGGAATCCAAAGGCTTTGCTTTGGCCCCTATAATTACCAACAGCTTCAAGAAATAGTTTCGAGCCGCCTTAAAGGAATTAATGCATTTAAACAACAAGCTATAGAGTTCGCTTCAAGAAAGGTGGCAGCTATTTCAGGGGATGCACGTCGTGCACTGGAGATATGCAGGCGTGCAGCAGAAATCACAGATTATCGACTAAAGAAACTAGCCTCAACCCCTAATGATGCATCTGAAGGAAAAACCCTTGTTGGTATGGCAGAGGTTGAAGCAGCCATCCAAGAAATGTTCCAGGCACCTCATATTCAAGTGATGAAAACTTGTTCCAAACTGAGTAAAGTATTTTTGACTGCTATGGTGTATGAACTGTATAAAACAGGAATGGGAGAAACTACTTTTGAAAAGTTGGCAATGACAGTCTCATGTCTCTGTACCAGCAATGGAGAAGCATTTCCTGGACATGACACACTATTAAGGATAGGTTGTAAGCTCGGTGAATGCAGAATTATTTTGTGTGAATCAGGAGCAAAGCACAGGTTGCAGAAGTTGCAGCTCAACTTTCCAAGTGACGATGTGGCGTTTGCACTCAAAGACAACAAGGAGCTACCTTGGTTGGCCAAGTATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006277 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009566 GO:0009567 GO:0009889 GO:0009987 GO:0010385 GO:0010468 GO:0010556 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA BAH PHD

Protein Analysis

850

Amino Acids

95.99

Weight (kDa)

8.56

Isoelectric Point (pI)

50.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	198 - 241	1.6e-07	PHD-finger
BAH	PF01426	277 - 368	3.1e-11	BAH domain
AAA_16	PF13191	469 - 613	3.7e-07	AAA ATPase domain
AAA_22	PF13401	495 - 621	7.1e-09	AAA domain
AAA	PF00004	498 - 643	1.6e-17	ATPase family associated with various cellular activities (AAA)
Cdc6-ORC-like_ATPase_lid	PF22606	651 - 703	1e-08	Cdc6/ORC-like, ATPase lid domain
AAA_lid_10	PF17872	670 - 704	1.7e-10	AAA lid domain
WHD_Cdc6	PF09079	744 - 835	1.2e-08	CDC6, C terminal winged helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12620 AT4G14700
fragaria_vesca	FvH4_7g17041
malus_domestica	MD03G1176600.v1.1 MD11G1197200.v1.1
prunus_persica	Prupe.4G246200_v2.0.a1 Prupe.5G048200_v2.0.a1 Prupe.5G048200_v2.0.a1
pyrus_communis	pycom03g13390
rosa_chinensis	RchiOBHm_Chr3g0490671
rosa_laevigata	RLG00000022877
rosa_multiflora	Rmu_sc0006380.1_g000017 Rmu_sc0012075.1_g000007
rosa_roxburghii	Rroxscaffold_6G00393320
rosa_rugosa	Rorug03G0245400
rosa_samantha	Rh3AG294600 Rh3BG330800 Rh3CG328300 Rh3DG327700
rosa_wichuraiana	Rw3G026040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	486
Acc36I	ACCTGC	1 cut(s)	128
AccB1I	GGYRCC	1 cut(s)	2215
AccBSI	CCGCTC	1 cut(s)	1711
AccI	GTMKAC	1 cut(s)	1231
AccII	CGCG	1 cut(s)	409
AciI	CCGC	9 cut(s)	5, 68, 106, 144, 248, 937, 1285, 1711, 1987
AclWI	GGATC	1 cut(s)	1890
AcoI	YGGCCR	1 cut(s)	2535
AcsI	RAATTY	3 cut(s)	330, 945, 1270
AcuI	CTGAAG	6 cut(s)	704, 717, 1131, 1581, 1740, 2175
AcyI	GRCGYC	1 cut(s)	191
AdeI	CACNNNGTG	1 cut(s)	2072
AfaI	GTAC	3 cut(s)	882, 1493, 2353
AfiI	CCNNNNNNNGG	3 cut(s)	112, 770, 1514
AflIII	ACRYGT	2 cut(s)	407, 531
AjiI	CACGTC	2 cut(s)	187, 2069
AjnI	CCWGG	4 cut(s)	352, 1507, 2211, 2374
Alw21I	GWGCWC	3 cut(s)	1255, 1332, 2077
Alw26I	GTCTC	3 cut(s)	899, 2344, 2351
Alw44I	GTGCAC	1 cut(s)	2073
AlwI	GGATC	1 cut(s)	1890
AoxI	GGCC	5 cut(s)	123, 417, 1829, 1945, 2535
ApaLI	GTGCAC	1 cut(s)	2073
ApeKI	GCWGC	8 cut(s)	130, 827, 1265, 1373, 2048, 2096, 2192, 2470
ApoI	RAATTY	3 cut(s)	330, 945, 1270
ArsI	GACNNNNNNTTYG	2 cut(s)	1169, 1201
AseI	ATTAAT	1 cut(s)	2001
Asp700I	GAANNNNTTC	3 cut(s)	214, 987, 2370
AspS9I	GGNCC	5 cut(s)	22, 123, 417, 748, 1946
AsuC2I	CCSGG	1 cut(s)	122
AsuHPI	GGTGA	4 cut(s)	521, 1136, 1617, 2426
AvaII	GGWCC	2 cut(s)	22, 748
BaeGI	GKGCMC	2 cut(s)	1671, 2077
BaeI	ACNNNNGTAYC	2 cut(s)	872, 905
BalI	TGGCCA	1 cut(s)	2537
BanI	GGYRCC	1 cut(s)	2215
BanII	GRGCYC	1 cut(s)	1255
BbsI	GAAGAC	3 cut(s)	174, 925, 1203
Bbv12I	GWGCWC	3 cut(s)	1255, 1332, 2077
BbvI	GCAGC	8 cut(s)	117, 814, 1252, 1385, 2060, 2108, 2204, 2482
BccI	CCATC	4 cut(s)	497, 854, 973, 2204
BciT130I	CCWGG	4 cut(s)	354, 1509, 2213, 2376
BcnI	CCSGG	1 cut(s)	122
BcoDI	GTCTC	3 cut(s)	899, 2344, 2351
BfaI	CTAG	4 cut(s)	414, 1235, 1535, 2129
BfmI	CTRYAG	4 cut(s)	26, 131, 1639, 2022
BfuAI	ACCTGC	1 cut(s)	128
BisI	GCNGC	9 cut(s)	131, 828, 1266, 1374, 1987, 2049, 2097, 2193, 2471
BlsI	GCNGC	9 cut(s)	132, 829, 1267, 1375, 1988, 2050, 2098, 2194, 2472
Bme1390I	CCNGG	5 cut(s)	122, 354, 1509, 2213, 2376
Bme18I	GGWCC	2 cut(s)	22, 748
BmgBI	CACGTC	2 cut(s)	187, 2069
BmgT120I	GGNCC	5 cut(s)	22, 123, 417, 748, 1946
BmiI	GGNNCC	4 cut(s)	23, 142, 1948, 2217
BmrFI	CCNGG	5 cut(s)	122, 354, 1509, 2213, 2376
BmsI	GCATC	7 cut(s)	544, 1328, 1558, 1631, 2053, 2137, 2159
BpiI	GAAGAC	3 cut(s)	174, 925, 1203
BplI	GAGNNNNNCTC	2 cut(s)	1700, 1732
BpmI	CTGGAG	4 cut(s)	336, 750, 796, 2099
Bpu10I	CCTNAGC	1 cut(s)	646
BpuMI	CCSGG	1 cut(s)	122
BsaAI	YACGTR	1 cut(s)	1333
BsaHI	GRCGYC	1 cut(s)	191
BsaJI	CCNNGG	4 cut(s)	321, 353, 1878, 2528
BsaXI	ACNNNNNCTCC	2 cut(s)	85, 115
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 770, 1514
Bse118I	RCCGGY	1 cut(s)	108
Bse1I	ACTGG	6 cut(s)	813, 919, 1519, 1801, 1832, 2082
Bse3DI	GCAATG	3 cut(s)	1045, 2337, 2365
BseBI	CCWGG	4 cut(s)	354, 1509, 2213, 2376
BseDI	CCNNGG	4 cut(s)	321, 353, 1878, 2528
BseGI	GGATG	9 cut(s)	559, 571, 583, 694, 1054, 1141, 1388, 2068, 2196
BseLI	CCNNNNNNNGG	3 cut(s)	112, 770, 1514
BseMI	GCAATG	3 cut(s)	1045, 2337, 2365
BseMII	CTCAG	3 cut(s)	267, 1881, 2243
BseNI	ACTGG	6 cut(s)	813, 919, 1519, 1801, 1832, 2082
BseRI	GAGGAG	4 cut(s)	320, 455, 556, 559
BseSI	GKGCMC	2 cut(s)	1671, 2077
BseXI	GCAGC	8 cut(s)	117, 814, 1252, 1385, 2060, 2108, 2204, 2482
BsgI	GTGCAG	1 cut(s)	2115
Bsh1236I	CGCG	1 cut(s)	409
Bsh1285I	CGRYCG	1 cut(s)	113
BshFI	GGCC	5 cut(s)	125, 419, 1831, 1947, 2537
BshNI	GGYRCC	1 cut(s)	2215
BsiEI	CGRYCG	1 cut(s)	113
BsiHKAI	GWGCWC	3 cut(s)	1255, 1332, 2077
BsiSI	CCGG	3 cut(s)	109, 121, 1572
BslFI	GGGAC	2 cut(s)	16, 1494
BslI	CCNNNNNNNGG	3 cut(s)	112, 770, 1514
BsmAI	GTCTC	3 cut(s)	899, 2344, 2351
BsmFI	GGGAC	2 cut(s)	16, 1494
BsmI	GAATGC	1 cut(s)	2423
BsnI	GGCC	5 cut(s)	125, 419, 1831, 1947, 2537
Bsp1286I	GDGCHC	4 cut(s)	1255, 1332, 1671, 2077
Bsp1407I	TGTACA	1 cut(s)	1491
Bsp143I	GATC	3 cut(s)	1354, 1780, 1882
Bsp19I	CCATGG	1 cut(s)	1878
BspACI	CCGC	9 cut(s)	5, 68, 106, 144, 248, 937, 1285, 1711, 1987
BspANI	GGCC	5 cut(s)	125, 419, 1831, 1947, 2537
BspCNI	CTCAG	3 cut(s)	268, 1882, 2244
BspFNI	CGCG	1 cut(s)	409
BspHI	TCATGA	1 cut(s)	1255
BspLI	GGNNCC	4 cut(s)	23, 142, 1948, 2217
BspMAI	CTGCAG	2 cut(s)	30, 135
BspMI	ACCTGC	1 cut(s)	128
BspPI	GGATC	1 cut(s)	1890
BspT107I	GGYRCC	1 cut(s)	2215
BsrBI	CCGCTC	1 cut(s)	1711
BsrDI	GCAATG	3 cut(s)	1045, 2337, 2365
BsrFI	RCCGGY	1 cut(s)	108
BsrGI	TGTACA	1 cut(s)	1491
BsrI	ACTGG	6 cut(s)	813, 919, 1519, 1801, 1832, 2082
BssAI	RCCGGY	1 cut(s)	108
BssECI	CCNNGG	4 cut(s)	321, 353, 1878, 2528
BssMI	GATC	3 cut(s)	1354, 1780, 1882
BssNAI	GTATAC	1 cut(s)	1232
BssNI	GRCGYC	1 cut(s)	191
BssT1I	CCWWGG	2 cut(s)	1878, 2528
Bst1107I	GTATAC	1 cut(s)	1232
Bst2UI	CCWGG	4 cut(s)	354, 1509, 2213, 2376
Bst4CI	ACNGT	5 cut(s)	400, 1124, 1592, 2289, 2338
Bst6I	CTCTTC	3 cut(s)	11, 368, 897
BstACI	GRCGYC	1 cut(s)	191
BstAPI	GCANNNNNTGC	3 cut(s)	2072, 2458, 2467
BstAUI	TGTACA	1 cut(s)	1491
BstBAI	YACGTR	1 cut(s)	1333
BstC8I	GCNNGC	6 cut(s)	118, 135, 730, 1036, 2090, 2094
BstDEI	CTNAG	7 cut(s)	276, 646, 1398, 1553, 1836, 1890, 2252
BstDSI	CCRYGG	1 cut(s)	1878
BstF5I	GGATG	9 cut(s)	559, 571, 583, 694, 1054, 1141, 1388, 2068, 2196
BstFNI	CGCG	1 cut(s)	409
BstKTI	GATC	3 cut(s)	1357, 1783, 1885
BstMAI	GTCTC	3 cut(s)	899, 2344, 2351
BstMBI	GATC	3 cut(s)	1354, 1780, 1882
BstMCI	CGRYCG	1 cut(s)	113
BstMWI	GCNNNNNNNGC	9 cut(s)	122, 143, 254, 1373, 1708, 1837, 2072, 2458, 2467
BstNI	CCWGG	4 cut(s)	354, 1509, 2213, 2376
BstSCI	CCNGG	5 cut(s)	120, 352, 1507, 2211, 2374
BstSFI	CTRYAG	4 cut(s)	26, 131, 1639, 2022
BstSLI	GKGCMC	2 cut(s)	1671, 2077
BstUI	CGCG	1 cut(s)	409
BstV1I	GCAGC	8 cut(s)	117, 814, 1252, 1385, 2060, 2108, 2204, 2482
BstV2I	GAAGAC	3 cut(s)	174, 925, 1203
BstX2I	RGATCY	1 cut(s)	1882
BstYI	RGATCY	1 cut(s)	1882
BstZ17I	GTATAC	1 cut(s)	1232
BsuRI	GGCC	5 cut(s)	125, 419, 1831, 1947, 2537
BtgI	CCRYGG	1 cut(s)	1878
BtrI	CACGTC	2 cut(s)	187, 2069
BtsCI	GGATG	9 cut(s)	559, 571, 583, 694, 1054, 1141, 1388, 2068, 2196
BtsIMutI	CAGTG	4 cut(s)	468, 680, 820, 2075
BveI	ACCTGC	1 cut(s)	128
Cac8I	GCNNGC	6 cut(s)	118, 135, 730, 1036, 2090, 2094
CciI	TCATGA	1 cut(s)	1255
Cfr10I	RCCGGY	1 cut(s)	108
Cfr13I	GGNCC	5 cut(s)	22, 123, 417, 748, 1946
CseI	GACGC	2 cut(s)	199, 1091
Csp6I	GTAC	3 cut(s)	881, 1492, 2352
CspCI	CAANNNNNGTGG	2 cut(s)	2025, 2060
CviAII	CATG	7 cut(s)	448, 1201, 1256, 1499, 1879, 2343, 2381
CviQI	GTAC	3 cut(s)	881, 1492, 2352
DdeI	CTNAG	7 cut(s)	276, 646, 1398, 1553, 1836, 1890, 2252
DpnI	GATC	3 cut(s)	1356, 1782, 1884
DpnII	GATC	3 cut(s)	1354, 1780, 1882
DraI	TTTAAA	1 cut(s)	2011
DraIII	CACNNNGTG	1 cut(s)	2072
EaeI	YGGCCR	1 cut(s)	2535
Eam1104I	CTCTTC	3 cut(s)	11, 368, 897
EarI	CTCTTC	3 cut(s)	11, 368, 897
EciI	GGCGGA	2 cut(s)	20, 133
Ecl136II	GAGCTC	1 cut(s)	1253
Eco130I	CCWWGG	2 cut(s)	1878, 2528
Eco24I	GRGCYC	1 cut(s)	1255
Eco47I	GGWCC	2 cut(s)	22, 748
Eco53kI	GAGCTC	1 cut(s)	1253
Eco57I	CTGAAG	6 cut(s)	704, 717, 1131, 1581, 1740, 2175
EcoICRI	GAGCTC	1 cut(s)	1253
EcoO109I	RGGNCCY	2 cut(s)	22, 417
EcoRII	CCWGG	4 cut(s)	352, 1507, 2211, 2374
EcoT14I	CCWWGG	2 cut(s)	1878, 2528
EcoT22I	ATGCAT	2 cut(s)	2008, 2152
EcoT38I	GRGCYC	1 cut(s)	1255
ErhI	CCWWGG	2 cut(s)	1878, 2528
FaeI	CATG	7 cut(s)	451, 1204, 1259, 1502, 1882, 2346, 2384
FaqI	GGGAC	2 cut(s)	16, 1494
FatI	CATG	7 cut(s)	447, 1200, 1255, 1498, 1878, 2342, 2380
FauI	CCCGC	2 cut(s)	113, 241
FauNDI	CATATG	1 cut(s)	845
FblI	GTMKAC	1 cut(s)	1231
Fnu4HI	GCNGC	9 cut(s)	131, 828, 1266, 1374, 1987, 2049, 2097, 2193, 2471
FokI	GGATG	9 cut(s)	566, 578, 590, 701, 1061, 1148, 1375, 2075, 2183
FriOI	GRGCYC	1 cut(s)	1255
Fsp4HI	GCNGC	9 cut(s)	131, 828, 1266, 1374, 1987, 2049, 2097, 2193, 2471
FspBI	CTAG	4 cut(s)	414, 1235, 1535, 2129
GluI	GCNGC	9 cut(s)	131, 828, 1266, 1374, 1987, 2049, 2097, 2193, 2471
GsuI	CTGGAG	4 cut(s)	336, 750, 796, 2099
HaeIII	GGCC	5 cut(s)	125, 419, 1831, 1947, 2537
HapII	CCGG	3 cut(s)	109, 121, 1572
HgaI	GACGC	2 cut(s)	199, 1091
Hin1I	GRCGYC	1 cut(s)	191
Hin1II	CATG	7 cut(s)	451, 1204, 1259, 1502, 1882, 2346, 2384
HindIII	AAGCTT	1 cut(s)	803
HpaII	CCGG	3 cut(s)	109, 121, 1572
HphI	GGTGA	4 cut(s)	521, 1136, 1617, 2426
Hpy166II	GTNNAC	2 cut(s)	1232, 2075
Hpy8I	GTNNAC	2 cut(s)	1232, 2075
Hpy99I	CGWCG	1 cut(s)	2073
HpyCH4III	ACNGT	5 cut(s)	400, 1124, 1592, 2289, 2338
HpyCH4IV	ACGT	6 cut(s)	186, 531, 883, 1332, 1483, 2068
HpyF10VI	GCNNNNNNNGC	9 cut(s)	122, 143, 254, 1373, 1708, 1837, 2072, 2458, 2467
HpyF3I	CTNAG	7 cut(s)	276, 646, 1398, 1553, 1836, 1890, 2252
HpySE526I	ACGT	6 cut(s)	186, 531, 883, 1332, 1483, 2068
Hsp92I	GRCGYC	1 cut(s)	191
Hsp92II	CATG	7 cut(s)	451, 1204, 1259, 1502, 1882, 2346, 2384
Kzo9I	GATC	3 cut(s)	1354, 1780, 1882
LmnI	GCTCC	3 cut(s)	385, 2444, 2521
Lsp1109I	GCAGC	8 cut(s)	117, 814, 1252, 1385, 2060, 2108, 2204, 2482
LweI	GCATC	7 cut(s)	544, 1328, 1558, 1631, 2053, 2137, 2159
MaeI	CTAG	4 cut(s)	414, 1235, 1535, 2129
MaeII	ACGT	6 cut(s)	186, 531, 883, 1332, 1483, 2068
MaeIII	GTNAC	4 cut(s)	187, 346, 403, 2486
MalI	GATC	3 cut(s)	1356, 1782, 1884
MbiI	CCGCTC	1 cut(s)	1711
MboI	GATC	3 cut(s)	1354, 1780, 1882
MflI	RGATCY	1 cut(s)	1882
MhlI	GDGCHC	4 cut(s)	1255, 1332, 1671, 2077
MlsI	TGGCCA	1 cut(s)	2537
MluI	ACGCGT	1 cut(s)	407
MluNI	TGGCCA	1 cut(s)	2537
MlyI	GAGTC	3 cut(s)	94, 164, 343
MmeI	TCCRAC	4 cut(s)	342, 782, 1410, 1661
Mox20I	TGGCCA	1 cut(s)	2537
Mph1103I	ATGCAT	2 cut(s)	2008, 2152
MroXI	GAANNNNTTC	3 cut(s)	214, 987, 2370
MscI	TGGCCA	1 cut(s)	2537
MseI	TTAA	8 cut(s)	369, 456, 606, 1661, 1992, 2001, 2010, 2393
MslI	CAYNNNNRTG	1 cut(s)	977
Msp20I	TGGCCA	1 cut(s)	2537
MspI	CCGG	3 cut(s)	109, 121, 1572
MspR9I	CCNGG	5 cut(s)	122, 354, 1509, 2213, 2376
Mva1269I	GAATGC	1 cut(s)	2423
MvaI	CCWGG	4 cut(s)	354, 1509, 2213, 2376
MvnI	CGCG	1 cut(s)	409
MwoI	GCNNNNNNNGC	9 cut(s)	122, 143, 254, 1373, 1708, 1837, 2072, 2458, 2467
NciI	CCSGG	1 cut(s)	122
NcoI	CCATGG	1 cut(s)	1878
NdeI	CATATG	1 cut(s)	845
NdeII	GATC	3 cut(s)	1354, 1780, 1882
NlaIII	CATG	7 cut(s)	451, 1204, 1259, 1502, 1882, 2346, 2384
NlaIV	GGNNCC	4 cut(s)	23, 142, 1948, 2217
NmuCI	GTSAC	3 cut(s)	187, 346, 2486
NsiI	ATGCAT	2 cut(s)	2008, 2152
PagI	TCATGA	1 cut(s)	1255
PctI	GAATGC	1 cut(s)	2423
PdmI	GAANNNNTTC	3 cut(s)	214, 987, 2370
PfeI	GAWTC	8 cut(s)	215, 983, 1012, 1190, 1454, 1549, 1926, 2438
PfoI	TCCNGGA	2 cut(s)	1507, 2374
PkrI	GCNGC	9 cut(s)	132, 829, 1267, 1375, 1988, 2050, 2098, 2194, 2472
PleI	GAGTC	3 cut(s)	94, 164, 343
PpsI	GAGTC	3 cut(s)	94, 164, 343
Ppu21I	YACGTR	1 cut(s)	1333
PpuMI	RGGWCCY	1 cut(s)	22
PshBI	ATTAAT	1 cut(s)	2001
PsiI	TTATAA	1 cut(s)	486
Psp124BI	GAGCTC	1 cut(s)	1255
Psp5II	RGGWCCY	1 cut(s)	22
Psp6I	CCWGG	4 cut(s)	352, 1507, 2211, 2374
PspGI	CCWGG	4 cut(s)	352, 1507, 2211, 2374
PspN4I	GGNNCC	4 cut(s)	23, 142, 1948, 2217
PspPI	GGNCC	5 cut(s)	22, 123, 417, 748, 1946
PspPPI	RGGWCCY	1 cut(s)	22
PstI	CTGCAG	2 cut(s)	30, 135
PsuI	RGATCY	1 cut(s)	1882
RsaI	GTAC	3 cut(s)	882, 1493, 2353
RsaNI	GTAC	3 cut(s)	881, 1492, 2352
RseI	CAYNNNNRTG	1 cut(s)	977
SacI	GAGCTC	1 cut(s)	1255
SaqAI	TTAA	8 cut(s)	369, 456, 606, 1661, 1992, 2001, 2010, 2393
SatI	GCNGC	9 cut(s)	131, 828, 1266, 1374, 1987, 2049, 2097, 2193, 2471
Sau3AI	GATC	3 cut(s)	1354, 1780, 1882
Sau96I	GGNCC	5 cut(s)	22, 123, 417, 748, 1946
SchI	GAGTC	3 cut(s)	94, 164, 343
ScrFI	CCNGG	5 cut(s)	122, 354, 1509, 2213, 2376
SduI	GDGCHC	4 cut(s)	1255, 1332, 1671, 2077
SfaNI	GCATC	7 cut(s)	544, 1328, 1558, 1631, 2053, 2137, 2159
SfcI	CTRYAG	4 cut(s)	26, 131, 1639, 2022
SinI	GGWCC	2 cut(s)	22, 748
SmiMI	CAYNNNNRTG	1 cut(s)	977
SsiI	CCGC	9 cut(s)	5, 68, 106, 144, 248, 937, 1285, 1711, 1987
SspMI	CTAG	4 cut(s)	414, 1235, 1535, 2129
SstI	GAGCTC	1 cut(s)	1255
StyD4I	CCNGG	5 cut(s)	120, 352, 1507, 2211, 2374
StyI	CCWWGG	2 cut(s)	1878, 2528
TaaI	ACNGT	5 cut(s)	400, 1124, 1592, 2289, 2338
TaiI	ACGT	6 cut(s)	189, 534, 886, 1335, 1486, 2071
TaqI	TCGA	6 cut(s)	422, 994, 1249, 1779, 1982, 2116
TaqII	GACCGA	1 cut(s)	335
TatI	WGTACW	1 cut(s)	1491
TauI	GCSGC	1 cut(s)	1989
TfiI	GAWTC	8 cut(s)	215, 983, 1012, 1190, 1454, 1549, 1926, 2438
Tru1I	TTAA	8 cut(s)	369, 456, 606, 1661, 1992, 2001, 2010, 2393
Tru9I	TTAA	8 cut(s)	369, 456, 606, 1661, 1992, 2001, 2010, 2393
TscAI	CASTG	4 cut(s)	468, 687, 820, 2082
TseFI	GTSAC	3 cut(s)	187, 346, 2486
TseI	GCWGC	8 cut(s)	130, 827, 1265, 1373, 2048, 2096, 2192, 2470
Tsp45I	GTSAC	3 cut(s)	187, 346, 2486
TspRI	CASTG	4 cut(s)	468, 687, 820, 2082
VneI	GTGCAC	1 cut(s)	2073
VpaK11BI	GGWCC	2 cut(s)	22, 748
VspI	ATTAAT	1 cut(s)	2001
XapI	RAATTY	3 cut(s)	330, 945, 1270
XmiI	GTMKAC	1 cut(s)	1231
XmnI	GAANNNNTTC	3 cut(s)	214, 987, 2370
XspI	CTAG	4 cut(s)	414, 1235, 1535, 2129
Zsp2I	ATGCAT	2 cut(s)	2008, 2152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.