pycom03g17140
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0013046
Physical Location & Seq
Reverse (-)
18296428 .. 18297662
1235 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1020 bp
ATGGGTGTGCCGGAAACCGACCCTCTTTCTCAGCTGAGCCTGCCGCCGGGGTTTCGATTCTATCCGACGGACGAGGAGCTTCTGGTTCAGTACCTCTGCCGCAAGGTTGCTGGGTACCAATTCAATCTGCAAATAATTGCTGAAATTGATCTTTCCAAGTTTGATCCTTGGGTTTTACCAAGCAAAGCGATATTTGGGGAAAAAGAATGGTACTTTTTCAGTCCGAGGGACCGGAAATACCCGAATGGGTCGCGACCCAATCGGGTTGCTGGGTCCGGGTACTGGAAGGCAACTGGAACTGATAAGGTTATTACAACTGAAGGTCGAAAAGTAGGGATTAAAAAAGCACTTGTTTTCTATGTGGGAAAAGCCCCAAAAGGCACCAAGACCAACTGGATTATGCACGAGTATCGCCTCATCGAGCCCTCTCGCAAAAATGGCAGCTCCAAGTTGGATGAATGGGTTTTGTGTCGTATTTACAAGAAGAGCAGCGGCTCGGCAGCGGCAGCGGCAGCGGCAGCACAGAAGCCCGTCACGAGCGTTTCGAGCAAAGAACACAGCAACGGCTCGTCGTCATCGTGCTCTTCTCAGCTCGACGACGTGCTCGAGTGGTTGCCGGATATTGACGACCAGAACTTCACCCTGCCCCGGATAAACTCGCTCAAGACGCTGCTGCAGCAGCAGGAGGACAGCAAGATTAATTTTCAGAACACCGGTTCCGGGAACTTCGACTGGGCGACTCTCGCCGGGCTCAACCCGGCGCCAGAACTCAATCTCAATAATCAGACTCAGCAAGGCCAAGGACAAATGAATTTGAATTTCAATAACAATGACGTCTCTCCCTTCAACCCCGCCTCTCTGCCACGTGGAATGGCCGCCGGAGAGGTTGGGAAGACGGCGGAGGAGGAGGTGCAGAGCGGACTCAGAACTCAGCGGGTGGATAACTCGAACTTCTTCCAGCAACGCTCTCAGAACATTTATTACCCGGTCCGGCCCAGCGGGTTCGGCCTCTGGCAGTAG

Protein Analysis

340

Amino Acids

37.82

Weight (kDa)

8.78

Isoelectric Point (pI)

38.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 15 - 139 3e-46 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013046)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52890 AT3G15500 AT4G27410 AT4G27410 AT4G27410
fragaria_vesca FvH4_3g20690
malus_domestica MD03G1222700.v1.1
prunus_persica Prupe.4G186800_v2.0.a1
pyrus_communis pycom03g17140 pycom11g21210
rosa_chinensis RchiOBHm_Chr5g0034761
rosa_multiflora Rmu_co8327833.1_g000001 Rmu_sc0002460.1_g000049
rosa_roxburghii Rroxscaffold_1G00045540
rosa_rugosa Rorug05G0148400
rosa_samantha Rh5AG240800 Rh5CG271800
rosa_wichuraiana Rw5G022000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 837
Acc65I GGTACC 1 cut(s) 114
AccB1I GGYRCC 3 cut(s) 114, 380, 760
AccBSI CCGCTC 1 cut(s) 918
AccII CGCG 1 cut(s) 253
AclWI GGATC 1 cut(s) 158
AcoI YGGCCR 1 cut(s) 873
AcsI RAATTY 2 cut(s) 811, 817
AcuI CTGAAG 1 cut(s) 339
AcvI CACGTG 1 cut(s) 866
AcyI GRCGYC 2 cut(s) 761, 834
AfaI GTAC 4 cut(s) 92, 116, 212, 281
AfiI CCNNNNNNNGG 4 cut(s) 46, 282, 648, 720
AgeI ACCGGT 1 cut(s) 713
AgsI TTSAA 4 cut(s) 124, 817, 823, 847
AjiI CACGTC 1 cut(s) 601
AloI GAACNNNNNNTCC 2 cut(s) 701, 733
AluBI AGCT 4 cut(s) 34, 79, 444, 592
AluI AGCT 4 cut(s) 34, 79, 444, 592
Alw21I GWGCWC 2 cut(s) 584, 606
Alw26I GTCTC 1 cut(s) 841
AlwI GGATC 1 cut(s) 158
Ama87I CYCGRG 1 cut(s) 605
AoxI GGCC 4 cut(s) 796, 873, 992, 1006
ApoI RAATTY 2 cut(s) 811, 817
AseI ATTAAT 1 cut(s) 699
AsiGI ACCGGT 1 cut(s) 713
Asp700I GAANNNNTTC 1 cut(s) 953
Asp718I GGTACC 1 cut(s) 114
AspLEI GCGC 1 cut(s) 763
AspS9I GGNCC 4 cut(s) 229, 273, 988, 993
AsuC2I CCSGG 7 cut(s) 48, 277, 649, 721, 748, 758, 986
AsuHPI GGTGA 1 cut(s) 631
AvaI CYCGRG 1 cut(s) 605
AvaII GGWCC 3 cut(s) 229, 273, 988
BanI GGYRCC 3 cut(s) 114, 380, 760
BanII GRGCYC 2 cut(s) 426, 753
BauI CACGAG 2 cut(s) 404, 535
BbrPI CACGTG 1 cut(s) 866
BbsI GAAGAC 1 cut(s) 899
Bbv12I GWGCWC 2 cut(s) 584, 606
BceAI ACGGC 2 cut(s) 580, 912
BcgI CGANNNNNNTGC 2 cut(s) 392, 426
BcnI CCSGG 7 cut(s) 48, 277, 649, 721, 748, 758, 986
BcoDI GTCTC 1 cut(s) 841
BfmI CTRYAG 1 cut(s) 674
BfoI RGCGCY 1 cut(s) 764
BlpI GCTNAGC 1 cut(s) 35
Bme1390I CCNGG 7 cut(s) 48, 277, 649, 721, 748, 758, 986
Bme18I GGWCC 3 cut(s) 229, 273, 988
BmeT110I CYCGRG 1 cut(s) 605
BmgBI CACGTC 1 cut(s) 601
BmgT120I GGNCC 4 cut(s) 229, 273, 988, 993
BmiI GGNNCC 6 cut(s) 116, 230, 274, 382, 718, 762
BmrFI CCNGG 7 cut(s) 48, 277, 649, 721, 748, 758, 986
BmrI ACTGGG 1 cut(s) 742
BmuI ACTGGG 1 cut(s) 742
BpiI GAAGAC 1 cut(s) 899
Bpu1102I GCTNAGC 1 cut(s) 35
BpuEI CTTGAG 1 cut(s) 647
BpuMI CCSGG 7 cut(s) 48, 277, 649, 721, 748, 758, 986
BsaAI YACGTR 1 cut(s) 866
BsaHI GRCGYC 2 cut(s) 761, 834
BsaJI CCNNGG 5 cut(s) 47, 167, 224, 647, 799
BsaWI WCCGGW 2 cut(s) 231, 713
Bsc4I CCNNNNNNNGG 4 cut(s) 46, 282, 648, 720
Bse118I RCCGGY 1 cut(s) 713
Bse1I ACTGG 4 cut(s) 287, 298, 398, 737
BseDI CCNNGG 5 cut(s) 47, 167, 224, 647, 799
BseGI GGATG 1 cut(s) 460
BseLI CCNNNNNNNGG 4 cut(s) 46, 282, 648, 720
BseMII CTCAG 7 cut(s) 26, 44, 602, 803, 937, 944, 983
BseNI ACTGG 4 cut(s) 287, 298, 398, 737
BseRI GAGGAG 3 cut(s) 89, 917, 920
BseYI CCCAGC 3 cut(s) 110, 269, 995
BsgI GTGCAG 1 cut(s) 932
Bsh1236I CGCG 1 cut(s) 253
BshFI GGCC 4 cut(s) 798, 875, 994, 1008
BshNI GGYRCC 3 cut(s) 114, 380, 760
BshTI ACCGGT 1 cut(s) 713
BsiHKAI GWGCWC 2 cut(s) 584, 606
BsiHKCI CYCGRG 1 cut(s) 605
BslFI GGGAC 1 cut(s) 242
BslI CCNNNNNNNGG 4 cut(s) 46, 282, 648, 720
BsmAI GTCTC 1 cut(s) 841
BsmBI CGTCTC 1 cut(s) 841
BsmFI GGGAC 1 cut(s) 242
BsnI GGCC 4 cut(s) 798, 875, 994, 1008
BsoBI CYCGRG 1 cut(s) 605
Bsp1286I GDGCHC 4 cut(s) 426, 584, 606, 753
Bsp143I GATC 2 cut(s) 148, 163
Bsp1720I GCTNAGC 1 cut(s) 35
Bsp68I TCGCGA 1 cut(s) 253
BspANI GGCC 4 cut(s) 798, 875, 994, 1008
BspCNI CTCAG 7 cut(s) 27, 43, 601, 802, 936, 943, 982
BspFNI CGCG 1 cut(s) 253
BspLI GGNNCC 6 cut(s) 116, 230, 274, 382, 718, 762
BspMAI CTGCAG 1 cut(s) 678
BspPI GGATC 1 cut(s) 158
BspQI GCTCTTC 2 cut(s) 479, 589
BspT107I GGYRCC 3 cut(s) 114, 380, 760
BsrBI CCGCTC 1 cut(s) 918
BsrFI RCCGGY 1 cut(s) 713
BsrI ACTGG 4 cut(s) 287, 298, 398, 737
BssAI RCCGGY 1 cut(s) 713
BssECI CCNNGG 5 cut(s) 47, 167, 224, 647, 799
BssMI GATC 2 cut(s) 148, 163
BssNI GRCGYC 2 cut(s) 761, 834
BssSI CACGAG 2 cut(s) 404, 535
BssT1I CCWWGG 2 cut(s) 167, 799
Bst2BI CACGAG 2 cut(s) 404, 535
Bst6I CTCTTC 2 cut(s) 479, 589
BstACI GRCGYC 2 cut(s) 761, 834
BstBAI YACGTR 1 cut(s) 866
BstC8I GCNNGC 1 cut(s) 41
BstDEI CTNAG 7 cut(s) 30, 35, 588, 789, 923, 930, 969
BstF5I GGATG 1 cut(s) 460
BstFNI CGCG 1 cut(s) 253
BstH2I RGCGCY 1 cut(s) 764
BstHHI GCGC 1 cut(s) 763
BstKTI GATC 2 cut(s) 151, 166
BstMAI GTCTC 1 cut(s) 841
BstMBI GATC 2 cut(s) 148, 163
BstSCI CCNGG 7 cut(s) 46, 275, 647, 719, 746, 756, 984
BstSFI CTRYAG 1 cut(s) 674
BstUI CGCG 1 cut(s) 253
BstV2I GAAGAC 1 cut(s) 899
BsuRI GGCC 4 cut(s) 798, 875, 994, 1008
BtrI CACGTC 1 cut(s) 601
BtsCI GGATG 1 cut(s) 460
BtuMI TCGCGA 1 cut(s) 253
Cac8I GCNNGC 1 cut(s) 41
CfoI GCGC 1 cut(s) 763
Cfr10I RCCGGY 1 cut(s) 713
Cfr13I GGNCC 4 cut(s) 229, 273, 988, 993
CpoI CGGWCCG 1 cut(s) 988
CseI GACGC 1 cut(s) 676
Csp6I GTAC 4 cut(s) 91, 115, 211, 280
CspAI ACCGGT 1 cut(s) 713
CspI CGGWCCG 1 cut(s) 988
CviQI GTAC 4 cut(s) 91, 115, 211, 280
DdeI CTNAG 7 cut(s) 30, 35, 588, 789, 923, 930, 969
DinI GGCGCC 1 cut(s) 762
DpnI GATC 2 cut(s) 150, 165
DpnII GATC 2 cut(s) 148, 163
EaeI YGGCCR 1 cut(s) 873
Eam1104I CTCTTC 2 cut(s) 479, 589
EarI CTCTTC 2 cut(s) 479, 589
EciI GGCGGA 1 cut(s) 914
Eco130I CCWWGG 2 cut(s) 167, 799
Eco24I GRGCYC 2 cut(s) 426, 753
Eco47I GGWCC 3 cut(s) 229, 273, 988
Eco57I CTGAAG 1 cut(s) 339
Eco72I CACGTG 1 cut(s) 866
Eco88I CYCGRG 1 cut(s) 605
EcoT14I CCWWGG 2 cut(s) 167, 799
EcoT38I GRGCYC 2 cut(s) 426, 753
EgeI GGCGCC 1 cut(s) 762
EheI GGCGCC 1 cut(s) 762
ErhI CCWWGG 2 cut(s) 167, 799
Esp3I CGTCTC 1 cut(s) 841
FaiI YATR 2 cut(s) 360, 401
FaqI GGGAC 1 cut(s) 242
FauI CCCGC 3 cut(s) 859, 927, 992
FokI GGATG 1 cut(s) 467
FriOI GRGCYC 2 cut(s) 426, 753
GlaI GCGC 1 cut(s) 762
GsaI CCCAGC 3 cut(s) 114, 273, 999
HaeII RGCGCY 1 cut(s) 764
HaeIII GGCC 4 cut(s) 798, 875, 994, 1008
HgaI GACGC 1 cut(s) 676
HhaI GCGC 1 cut(s) 763
Hin1I GRCGYC 2 cut(s) 761, 834
Hin6I GCGC 1 cut(s) 761
HinP1I GCGC 1 cut(s) 761
HinfI GANTC 4 cut(s) 57, 739, 787, 921
HphI GGTGA 1 cut(s) 631
Hpy188I TCNGA 6 cut(s) 66, 225, 708, 786, 926, 972
Hpy188III TCNNGA 3 cut(s) 252, 535, 664
Hpy99I CGWCG 4 cut(s) 70, 574, 599, 602
HpyAV CCTTC 3 cut(s) 280, 314, 853
HpyCH4IV ACGT 3 cut(s) 600, 834, 865
HpyCH4V TGCA 4 cut(s) 130, 403, 676, 913
HpyF3I CTNAG 7 cut(s) 30, 35, 588, 789, 923, 930, 969
HpySE526I ACGT 3 cut(s) 600, 834, 865
Hsp92I GRCGYC 2 cut(s) 761, 834
HspAI GCGC 1 cut(s) 761
KasI GGCGCC 1 cut(s) 760
KpnI GGTACC 1 cut(s) 118
Kzo9I GATC 2 cut(s) 148, 163
LguI GCTCTTC 2 cut(s) 479, 589
LmnI GCTCC 2 cut(s) 76, 449
MaeII ACGT 3 cut(s) 600, 834, 865
MaeIII GTNAC 1 cut(s) 532
MalI GATC 2 cut(s) 150, 165
MbiI CCGCTC 1 cut(s) 918
MboI GATC 2 cut(s) 148, 163
MboII GAAGA 4 cut(s) 496, 576, 904, 946
MhlI GDGCHC 4 cut(s) 426, 584, 606, 753
MluCI AATT 6 cut(s) 119, 135, 144, 700, 811, 817
Mly113I GGCGCC 1 cut(s) 761
MlyI GAGTC 3 cut(s) 733, 781, 915
MmeI TCCRAC 2 cut(s) 89, 432
MroXI GAANNNNTTC 1 cut(s) 953
MseI TTAA 2 cut(s) 339, 699
MspA1I CMGCKG 7 cut(s) 34, 492, 503, 509, 515, 934, 999
MspR9I CCNGG 7 cut(s) 48, 277, 649, 721, 748, 758, 986
MvnI CGCG 1 cut(s) 253
NarI GGCGCC 1 cut(s) 761
NciI CCSGG 7 cut(s) 48, 277, 649, 721, 748, 758, 986
NdeII GATC 2 cut(s) 148, 163
NlaIV GGNNCC 6 cut(s) 116, 230, 274, 382, 718, 762
NmeAIII GCCGAG 1 cut(s) 476
NmuCI GTSAC 1 cut(s) 532
NruI TCGCGA 1 cut(s) 253
PaeR7I CTCGAG 1 cut(s) 605
PciSI GCTCTTC 2 cut(s) 479, 589
PcsI WCGNNNNNNNCGW 3 cut(s) 542, 575, 603
PdmI GAANNNNTTC 1 cut(s) 953
PfeI GAWTC 1 cut(s) 57
PfoI TCCNGGA 1 cut(s) 719
PinAI ACCGGT 1 cut(s) 713
PleI GAGTC 3 cut(s) 733, 781, 915
PluTI GGCGCC 1 cut(s) 764
PmaCI CACGTG 1 cut(s) 866
PmlI CACGTG 1 cut(s) 866
PpsI GAGTC 3 cut(s) 733, 781, 915
Ppu21I YACGTR 1 cut(s) 866
PshBI ATTAAT 1 cut(s) 699
PspCI CACGTG 1 cut(s) 866
PspFI CCCAGC 3 cut(s) 110, 269, 995
PspN4I GGNNCC 6 cut(s) 116, 230, 274, 382, 718, 762
PspPI GGNCC 4 cut(s) 229, 273, 988, 993
PspXI VCTCGAGB 1 cut(s) 605
PsrI GAACNNNNNNTAC 2 cut(s) 965, 997
PstI CTGCAG 1 cut(s) 678
PvuII CAGCTG 1 cut(s) 34
RruI TCGCGA 1 cut(s) 253
RsaI GTAC 4 cut(s) 92, 116, 212, 281
RsaNI GTAC 4 cut(s) 91, 115, 211, 280
Rsr2I CGGWCCG 1 cut(s) 988
RsrII CGGWCCG 1 cut(s) 988
SapI GCTCTTC 2 cut(s) 479, 589
SaqAI TTAA 2 cut(s) 339, 699
Sau3AI GATC 2 cut(s) 148, 163
Sau96I GGNCC 4 cut(s) 229, 273, 988, 993
SchI GAGTC 3 cut(s) 733, 781, 915
ScrFI CCNGG 7 cut(s) 48, 277, 649, 721, 748, 758, 986
SduI GDGCHC 4 cut(s) 426, 584, 606, 753
SfcI CTRYAG 1 cut(s) 674
SfoI GGCGCC 1 cut(s) 762
Sfr274I CTCGAG 1 cut(s) 605
SinI GGWCC 3 cut(s) 229, 273, 988
SlaI CTCGAG 1 cut(s) 605
SmlI CTYRAG 2 cut(s) 605, 662
SmoI CTYRAG 2 cut(s) 605, 662
Sse9I AATT 6 cut(s) 119, 135, 144, 700, 811, 817
SspDI GGCGCC 1 cut(s) 760
StyD4I CCNGG 7 cut(s) 46, 275, 647, 719, 746, 756, 984
StyI CCWWGG 2 cut(s) 167, 799
TaiI ACGT 3 cut(s) 603, 837, 868
TaqI TCGA 8 cut(s) 55, 325, 420, 545, 594, 606, 729, 947
TasI AATT 6 cut(s) 119, 135, 144, 700, 811, 817
TauI GCSGC 7 cut(s) 46, 102, 495, 506, 512, 518, 878
TfiI GAWTC 1 cut(s) 57
Tru1I TTAA 2 cut(s) 339, 699
Tru9I TTAA 2 cut(s) 339, 699
TseFI GTSAC 1 cut(s) 532
Tsp45I GTSAC 1 cut(s) 532
TspDTI ATGAA 2 cut(s) 471, 824
TspGWI ACGGA 1 cut(s) 83
VpaK11BI GGWCC 3 cut(s) 229, 273, 988
VspI ATTAAT 1 cut(s) 699
XapI RAATTY 2 cut(s) 811, 817
XhoI CTCGAG 1 cut(s) 605
XmnI GAANNNNTTC 1 cut(s) 953
ZraI GACGTC 1 cut(s) 835
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.