Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007130

Physical Location & Seq

Genomic Coordinates Reverse (-)

20606727 .. 20608505

Gene Structure 1779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g20030.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGTGCCGGCAGGAGGAGCGGGTGCGGATGTCGGCGGAGGAAGAAATTGCGGCGGAGGAGAGCCTCTCTGTCTATTGCAAGCCTGTAGAGTTCTACAACATTCTCCAACGCCGCGCTATTAGAAATCCGGCATTTCTTCAAAGATGTTTGAGCTACAAAATAGAGACCAAGCACAGAAGGAGGATACAAATGACGGTTTCCATTTCGATGAATGAGAAGGAAGGTGTACAGACCCATAATCTCTTTCCTTTGTATGTGTTTTTGGCCAGACTAGTTCCTGATGTTGCGGTTCCAGAGTATTCTGCTACATATCGATTCAGTCGAGCTTGCATGTTAAGCAATTCCACTGGGGTTTATGGGAGTAGTCAACTTCAAGCAAATTTTATTCTGCCTGACATTAATAAGCTAACACTGGAGGCTAAATCTGGCTCACTTGCAATCTTGCTCGTCAGCTTTGTGGGAGCACAAAATCCATTTCGTGGAATCAATTTATCCAAGGGTCCTGTGGATATGTCTTCTTTCCCTTCAAATGCAGGAGGATATTGTCTATGGAGCAAGATACCACTTGAATTACTTTATATCTCTTGGGAGAATTCTCCTAATTTTCGTTTGGGACAGAGAGCCGAGGTGATTTCAACGATTGACATGCGCTCTTGCTTCTTGAAGTTGAGCTGTTTAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006349 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031490 GO:0034641 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0071514 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VEFS-Box

Protein Analysis

228

Amino Acids

25.75

Weight (kDa)

8.98

Isoelectric Point (pI)

62.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51230 AT5G51230 AT5G51230
fragaria_vesca	FvH4_3g17191
malus_domestica	MD03G1252500.v1.1 MD11G1274700.v1.1
prunus_persica	Prupe.4G152500_v2.0.a1 Prupe.4G152500_v2.0.a1 Prupe.4G152500_v2.0.a1 Prupe.4G152500_v2.0.a1 Prupe.4G152500_v2.0.a1
pyrus_communis	pycom03g20030 pycom11g24240
rosa_chinensis	RchiOBHm_Chr5g0028591
rosa_laevigata	RLG00000033102 RLG00000033103 RLG00000033104
rosa_multiflora	Rmu_sc0001575.1_g000016
rosa_roxburghii	Rroxscaffold_1G00051190
rosa_rugosa	Rorug05G0109700
rosa_samantha	Rh5AG201800 Rh5BG200000 Rh5CG220300 Rh5DG203200
rosa_wichuraiana	Rw5G018290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	479
AccBSI	CCGCTC	1 cut(s)	19
AccII	CGCG	1 cut(s)	114
AciI	CCGC	7 cut(s)	19, 25, 35, 50, 53, 112, 287
AcoI	YGGCCR	1 cut(s)	264
AcsI	RAATTY	2 cut(s)	379, 592
AfaI	GTAC	1 cut(s)	228
AfiI	CCNNNNNNNGG	2 cut(s)	13, 479
AgsI	TTSAA	6 cut(s)	140, 374, 528, 569, 636, 664
AhlI	ACTAGT	1 cut(s)	271
AluBI	AGCT	5 cut(s)	153, 326, 406, 453, 672
AluI	AGCT	5 cut(s)	153, 326, 406, 453, 672
Alw21I	GWGCWC	1 cut(s)	466
Alw26I	GTCTC	1 cut(s)	158
AoxI	GGCC	1 cut(s)	264
ApoI	RAATTY	2 cut(s)	379, 592
AseI	ATTAAT	1 cut(s)	399
AspLEI	GCGC	2 cut(s)	116, 651
AspS9I	GGNCC	1 cut(s)	500
AsuHPI	GGTGA	1 cut(s)	640
AvaII	GGWCC	1 cut(s)	500
BalI	TGGCCA	1 cut(s)	266
BbsI	GAAGAC	1 cut(s)	507
Bbv12I	GWGCWC	1 cut(s)	466
BcgI	CGANNNNNNTGC	2 cut(s)	628, 662
BciVI	GTATCC	1 cut(s)	177
BcoDI	GTCTC	1 cut(s)	158
BcuI	ACTAGT	1 cut(s)	271
BfaI	CTAG	1 cut(s)	272
BfmI	CTRYAG	1 cut(s)	84
BfuI	GTATCC	1 cut(s)	177
BisI	GCNGC	2 cut(s)	51, 112
BlsI	GCNGC	2 cut(s)	52, 113
Bme18I	GGWCC	1 cut(s)	500
BmgT120I	GGNCC	1 cut(s)	500
BmiI	GGNNCC	2 cut(s)	291, 501
BmrI	ACTGGG	1 cut(s)	357
BmuI	ACTGGG	1 cut(s)	357
BpiI	GAAGAC	1 cut(s)	507
BplI	GAGNNNNNCTC	2 cut(s)	50, 82
BpmI	CTGGAG	1 cut(s)	434
Bsa29I	ATCGAT	1 cut(s)	313
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	2 cut(s)	495, 624
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 479
Bse118I	RCCGGY	1 cut(s)	6
Bse1I	ACTGG	2 cut(s)	352, 417
BseCI	ATCGAT	1 cut(s)	313
BseDI	CCNNGG	2 cut(s)	495, 624
BseGI	GGATG	1 cut(s)	33
BseLI	CCNNNNNNNGG	2 cut(s)	13, 479
BseNI	ACTGG	2 cut(s)	352, 417
BseRI	GAGGAG	2 cut(s)	29, 71
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	1 cut(s)	266
BshVI	ATCGAT	1 cut(s)	313
BsiHKAI	GWGCWC	1 cut(s)	466
BsiSI	CCGG	2 cut(s)	7, 128
BslFI	GGGAC	1 cut(s)	627
BslI	CCNNNNNNNGG	2 cut(s)	13, 479
BsmAI	GTCTC	1 cut(s)	158
BsmFI	GGGAC	1 cut(s)	627
BsnI	GGCC	1 cut(s)	266
Bso31I	GGTCTC	1 cut(s)	158
Bsp1286I	GDGCHC	1 cut(s)	466
Bsp1407I	TGTACA	1 cut(s)	226
BspACI	CCGC	7 cut(s)	19, 25, 35, 50, 53, 112, 287
BspANI	GGCC	1 cut(s)	266
BspDI	ATCGAT	1 cut(s)	313
BspFNI	CGCG	1 cut(s)	114
BspLI	GGNNCC	2 cut(s)	291, 501
BspTNI	GGTCTC	1 cut(s)	158
BsrBI	CCGCTC	1 cut(s)	19
BsrFI	RCCGGY	1 cut(s)	6
BsrGI	TGTACA	1 cut(s)	226
BsrI	ACTGG	2 cut(s)	352, 417
BssAI	RCCGGY	1 cut(s)	6
BssECI	CCNNGG	2 cut(s)	495, 624
BssT1I	CCWWGG	1 cut(s)	495
Bst4CI	ACNGT	1 cut(s)	196
BstAUI	TGTACA	1 cut(s)	226
BstC8I	GCNNGC	3 cut(s)	8, 80, 328
BstF5I	GGATG	1 cut(s)	33
BstFNI	CGCG	1 cut(s)	114
BstHHI	GCGC	2 cut(s)	116, 651
BstMAI	GTCTC	1 cut(s)	158
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 336
BstNSI	RCATGY	2 cut(s)	334, 649
BstSFI	CTRYAG	1 cut(s)	84
BstUI	CGCG	1 cut(s)	114
BstV2I	GAAGAC	1 cut(s)	507
Bsu15I	ATCGAT	1 cut(s)	313
BsuI	GTATCC	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	266
BsuTUI	ATCGAT	1 cut(s)	313
BtsCI	GGATG	1 cut(s)	33
BtsIMutI	CAGTG	2 cut(s)	345, 410
Cac8I	GCNNGC	3 cut(s)	8, 80, 328
CfoI	GCGC	2 cut(s)	116, 651
Cfr10I	RCCGGY	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	500
ClaI	ATCGAT	1 cut(s)	313
Csp6I	GTAC	1 cut(s)	227
CviAII	CATG	2 cut(s)	331, 646
CviQI	GTAC	1 cut(s)	227
DraI	TTTAAA	1 cut(s)	678
EaeI	YGGCCR	1 cut(s)	264
EciI	GGCGGA	2 cut(s)	50, 68
Eco130I	CCWWGG	1 cut(s)	495
Eco31I	GGTCTC	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	500
EcoO109I	RGGNCCY	1 cut(s)	500
EcoRI	GAATTC	1 cut(s)	592
EcoT14I	CCWWGG	1 cut(s)	495
ErhI	CCWWGG	1 cut(s)	495
FaeI	CATG	2 cut(s)	334, 649
FaiI	YATR	9 cut(s)	237, 255, 310, 332, 357, 512, 550, 579, 647
FaqI	GGGAC	1 cut(s)	627
FatI	CATG	2 cut(s)	330, 645
FauI	CCCGC	1 cut(s)	12
Fnu4HI	GCNGC	2 cut(s)	51, 112
FokI	GGATG	1 cut(s)	40
Fsp4HI	GCNGC	2 cut(s)	51, 112
FspBI	CTAG	1 cut(s)	272
GlaI	GCGC	2 cut(s)	115, 650
GluI	GCNGC	2 cut(s)	51, 112
GsuI	CTGGAG	1 cut(s)	434
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	2 cut(s)	7, 128
HhaI	GCGC	2 cut(s)	116, 651
Hin1II	CATG	2 cut(s)	334, 649
Hin6I	GCGC	2 cut(s)	114, 649
HinP1I	GCGC	2 cut(s)	114, 649
HincII	GTYRAC	1 cut(s)	368
HindII	GTYRAC	1 cut(s)	368
HinfI	GANTC	2 cut(s)	315, 483
HpaII	CCGG	2 cut(s)	7, 128
HphI	GGTGA	1 cut(s)	640
Hpy166II	GTNNAC	2 cut(s)	227, 368
Hpy188III	TCNNGA	3 cut(s)	278, 293, 661
Hpy8I	GTNNAC	2 cut(s)	227, 368
HpyAV	CCTTC	4 cut(s)	171, 211, 215, 534
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4V	TGCA	4 cut(s)	78, 330, 437, 533
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 336
Hsp92II	CATG	2 cut(s)	334, 649
HspAI	GCGC	2 cut(s)	114, 649
KroI	GCCGGC	1 cut(s)	6
KroNI	GCCGGC	1 cut(s)	8
LmnI	GCTCC	3 cut(s)	16, 461, 552
MaeI	CTAG	1 cut(s)	272
MbiI	CCGCTC	1 cut(s)	19
MboII	GAAGA	3 cut(s)	53, 128, 507
MhlI	GDGCHC	1 cut(s)	466
MlsI	TGGCCA	1 cut(s)	266
MluCI	AATT	8 cut(s)	45, 340, 379, 487, 569, 592, 601, 679
MluNI	TGGCCA	1 cut(s)	266
MmeI	TCCRAC	1 cut(s)	130
MnlI	CCTC	8 cut(s)	7, 31, 49, 74, 174, 409, 530, 619
Mox20I	TGGCCA	1 cut(s)	266
MroNI	GCCGGC	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	266
MseI	TTAA	3 cut(s)	335, 399, 677
MslI	CAYNNNNRTG	1 cut(s)	206
Msp20I	TGGCCA	1 cut(s)	266
MspI	CCGG	2 cut(s)	7, 128
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	2 cut(s)	16, 336
NaeI	GCCGGC	1 cut(s)	8
NgoMIV	GCCGGC	1 cut(s)	6
NlaIII	CATG	2 cut(s)	334, 649
NlaIV	GGNNCC	2 cut(s)	291, 501
NmeAIII	GCCGAG	1 cut(s)	649
NspI	RCATGY	2 cut(s)	334, 649
PcsI	WCGNNNNNNNCGW	1 cut(s)	319
PdiI	GCCGGC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	315, 483
PflMI	CCANNNNNTGG	1 cut(s)	479
PkrI	GCNGC	2 cut(s)	52, 113
PpuMI	RGGWCCY	1 cut(s)	500
PshBI	ATTAAT	1 cut(s)	399
Psp5II	RGGWCCY	1 cut(s)	500
PspN4I	GGNNCC	2 cut(s)	291, 501
PspPI	GGNCC	1 cut(s)	500
PspPPI	RGGWCCY	1 cut(s)	500
RsaI	GTAC	1 cut(s)	228
RsaNI	GTAC	1 cut(s)	227
RseI	CAYNNNNRTG	1 cut(s)	206
SaqAI	TTAA	3 cut(s)	335, 399, 677
SatI	GCNGC	2 cut(s)	51, 112
Sau96I	GGNCC	1 cut(s)	500
SduI	GDGCHC	1 cut(s)	466
SetI	ASST	7 cut(s)	155, 226, 328, 408, 455, 630, 674
SfcI	CTRYAG	1 cut(s)	84
SinI	GGWCC	1 cut(s)	500
SmiMI	CAYNNNNRTG	1 cut(s)	206
SpeI	ACTAGT	1 cut(s)	271
Sse9I	AATT	8 cut(s)	45, 340, 379, 487, 569, 592, 601, 679
SsiI	CCGC	7 cut(s)	19, 25, 35, 50, 53, 112, 287
SspMI	CTAG	1 cut(s)	272
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	1 cut(s)	196
TaqI	TCGA	3 cut(s)	206, 313, 322
TasI	AATT	8 cut(s)	45, 340, 379, 487, 569, 592, 601, 679
TatI	WGTACW	1 cut(s)	226
TauI	GCSGC	2 cut(s)	53, 114
TfiI	GAWTC	2 cut(s)	315, 483
Tru1I	TTAA	3 cut(s)	335, 399, 677
Tru9I	TTAA	3 cut(s)	335, 399, 677
TscAI	CASTG	2 cut(s)	352, 417
TspDTI	ATGAA	1 cut(s)	224
TspRI	CASTG	2 cut(s)	352, 417
Van91I	CCANNNNNTGG	1 cut(s)	479
VpaK11BI	GGWCC	1 cut(s)	500
VspI	ATTAAT	1 cut(s)	399
XapI	RAATTY	2 cut(s)	379, 592
XceI	RCATGY	2 cut(s)	334, 649
XcmI	CCANNNNNNNNNTGG	1 cut(s)	502
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.