Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0007130

Physical Location & Seq

Genomic Coordinates Forward (+)

23643155 .. 23647973

Gene Structure 4819 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG201800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGTGCCGGCAAGAATCGCAATCGCACGTGCGAATGTCGTCGGAGGAAGAAATCGCCGCCGAGGAGAGCCTCTCTATCTATTGCAAGCCTGTTGAGTTCTATAACATCCTCCAACGCCGTGCTATAAGAAATCCGGCTTTTCTTCAAAGATGTTTGAGCTACAAAAGAGAGGCCAAGCACAAAAAGAGAATACAAATGACAGTTTCAGTTTCGAGGAATGAGCGAGAAGGCGTACAAACTCAGAAGCTCTTTCCTTTGTATGTGTTTTTGGCGAGACTAGTTCCTGATGTTGTGGCTCCAGAGTATAATGCTACATATCGATTCAGTCGAGCTTGCATGTTAAGCAATTCAACTGGGGTTGATGGGAGTGGTCAACATCAAGCAAATTTTATTCTGCCTGACATCAACAAGCTCGCATTGGAGGCTAAATCGGGCTCACTTGCCATTTTGCTTGTTAGCTTTGTGGGTGCACAAAATCCACTGCGTGGAATCAATTTGTCCAAGGGTCCAATGGATATGGCATCCTCTCCTGCAAATGTAGGAGGGTATTGCCTATGGAGCAAGATACCACTGGAATTACTTTATATATCGTGGGAGAGTTCTCCTAATTTTGGTTTGGGACAGAGAGCTGAGTTGATGTCGACTATTGACATGCAATCTTGCTTTTTGAAGTTAAGTTGTTCAAATGAGGACAAGTGCCTTATGATTGCAATTCCCTATAATCCAGAAACTGCTATCATATCCCAGCAAGTGCAGGTCAATATTTCTGCAGAGGAGCTTGGTGCCAGGGAGAAATCTCCTTATAATACATACATACGTAATGACATTCCTTCTTCATCGTTAGCTCATATCATTCGGTTAAGGGCAGGAAATGTGATTTTTAATTATAGATACTACAACAATACTTTGCAAAGGACTGAAGTGACTGAAGATTTTTCCTGTCCGTTTTGTTTGGTTAAATGTGCAAGCTTTAAGGGTCTGAAATATCATCTGCTCTCATCACATGATCTCTTCAACTTTGAATTTTGGGTAACTGAAGAGTGTCAAGCTGTAAACGTGTCTGTGAAAACTGACAATTGGACATCTGAGATTGTTGCTGATGGTGTTGATCCGAAGCTACAAGTATTCTTCTTTTGCTCAAAGCCACTTAGACGAAGAAGACCCAAGAGCCTAAATCAAAATTCAAAGCATGTACATCCGCACGTCTTACACTCGAGCTTACCTTCAGGACTCTGTGTGCTTTTGGACAAGGCCGATGACTGCAGACTGCAGATGAGATATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006349 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031490 GO:0034641 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0071514 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VEFS-Box

Protein Analysis

428

Amino Acids

48.57

Weight (kDa)

8.63

Isoelectric Point (pI)

54.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7651	PF24663	53 - 263	3.8e-91	Domain of unknown function (DUF7651)
Zn_SUZ12	PF23320	290 - 358	5.1e-34	Polycomb protein SUZ12-like, Zn domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51230 AT5G51230 AT5G51230
fragaria_vesca	FvH4_3g17191
malus_domestica	MD03G1252500.v1.1 MD11G1274700.v1.1
prunus_persica	Prupe.4G152500_v2.0.a1 Prupe.4G152500_v2.0.a1 Prupe.4G152500_v2.0.a1 Prupe.4G152500_v2.0.a1 Prupe.4G152500_v2.0.a1
pyrus_communis	pycom03g20030 pycom11g24240
rosa_chinensis	RchiOBHm_Chr5g0028591
rosa_laevigata	RLG00000033102 RLG00000033103 RLG00000033104
rosa_multiflora	Rmu_sc0001575.1_g000016
rosa_roxburghii	Rroxscaffold_1G00051190
rosa_rugosa	Rorug05G0109700
rosa_samantha	Rh5AG201800 Rh5BG200000 Rh5CG220300 Rh5DG203200
rosa_wichuraiana	Rw5G018290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	804
Acc36I	ACCTGC	1 cut(s)	745
AccB1I	GGYRCC	1 cut(s)	782
AccB7I	CCANNNNNTGG	1 cut(s)	485
AccI	GTMKAC	1 cut(s)	641
AciI	CCGC	2 cut(s)	57, 1199
AclWI	GGATC	1 cut(s)	1103
AcsI	RAATTY	3 cut(s)	385, 1022, 1180
AcuI	CTGAAG	4 cut(s)	939, 948, 1056, 1209
AcvI	CACGTG	1 cut(s)	28
AdeI	CACNNNGTG	1 cut(s)	485
AfaI	GTAC	2 cut(s)	234, 1194
AfiI	CCNNNNNNNGG	2 cut(s)	485, 611
AflIII	ACRYGT	1 cut(s)	1056
AgsI	TTSAA	7 cut(s)	146, 351, 670, 684, 1015, 1022, 1185
AhlI	ACTAGT	1 cut(s)	277
AjiI	CACGTC	1 cut(s)	1204
AjnI	CCWGG	1 cut(s)	785
Alw21I	GWGCWC	1 cut(s)	472
Alw26I	GTCTC	1 cut(s)	268
Alw44I	GTGCAC	1 cut(s)	468
AlwI	GGATC	1 cut(s)	1103
AlwNI	CAGNNNCTG	1 cut(s)	731
Ama87I	CYCGRG	1 cut(s)	1213
AoxI	GGCC	2 cut(s)	171, 1251
ApaLI	GTGCAC	1 cut(s)	468
ApoI	RAATTY	3 cut(s)	385, 1022, 1180
AspS9I	GGNCC	1 cut(s)	506
AvaI	CYCGRG	1 cut(s)	1213
AvaII	GGWCC	1 cut(s)	506
BaeGI	GKGCMC	1 cut(s)	472
BanI	GGYRCC	1 cut(s)	782
BanII	GRGCYC	1 cut(s)	437
BbrPI	CACGTG	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	1165
Bbv12I	GWGCWC	1 cut(s)	472
BccI	CCATC	2 cut(s)	356, 1094
BceAI	ACGGC	1 cut(s)	102
BciT130I	CCWGG	1 cut(s)	787
BcoDI	GTCTC	1 cut(s)	268
BcuI	ACTAGT	1 cut(s)	277
BfaI	CTAG	1 cut(s)	278
BfmI	CTRYAG	3 cut(s)	768, 1261, 1268
BfuAI	ACCTGC	1 cut(s)	745
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	1 cut(s)	787
Bme18I	GGWCC	1 cut(s)	506
BmeT110I	CYCGRG	1 cut(s)	1213
BmgBI	CACGTC	1 cut(s)	1204
BmgT120I	GGNCC	1 cut(s)	506
BmiI	GGNNCC	3 cut(s)	297, 507, 784
BmrFI	CCNGG	1 cut(s)	787
BmrI	ACTGGG	1 cut(s)	363
BmsI	GCATC	1 cut(s)	530
BmuI	ACTGGG	1 cut(s)	363
BpiI	GAAGAC	1 cut(s)	1165
BplI	GAGNNNNNCTC	2 cut(s)	56, 88
BpmI	CTGGAG	1 cut(s)	282
Bsa29I	ATCGAT	1 cut(s)	319
BsaAI	YACGTR	2 cut(s)	28, 818
BsaJI	CCNNGG	3 cut(s)	60, 501, 786
Bsc4I	CCNNNNNNNGG	2 cut(s)	485, 611
Bse118I	RCCGGY	1 cut(s)	6
Bse1I	ACTGG	2 cut(s)	358, 576
BseBI	CCWGG	1 cut(s)	787
BseCI	ATCGAT	1 cut(s)	319
BseDI	CCNNGG	3 cut(s)	60, 501, 786
BseGI	GGATG	3 cut(s)	105, 521, 1195
BseLI	CCNNNNNNNGG	2 cut(s)	485, 611
BseMII	CTCAG	3 cut(s)	254, 621, 1077
BseNI	ACTGG	2 cut(s)	358, 576
BseRI	GAGGAG	2 cut(s)	77, 788
BseSI	GKGCMC	1 cut(s)	472
BseYI	CCCAGC	1 cut(s)	744
BsgI	GTGCAG	1 cut(s)	773
BshFI	GGCC	2 cut(s)	173, 1253
BshNI	GGYRCC	1 cut(s)	782
BshVI	ATCGAT	1 cut(s)	319
BsiHKAI	GWGCWC	1 cut(s)	472
BsiHKCI	CYCGRG	1 cut(s)	1213
BsiSI	CCGG	2 cut(s)	7, 134
BslFI	GGGAC	1 cut(s)	633
BslI	CCNNNNNNNGG	2 cut(s)	485, 611
BsmAI	GTCTC	1 cut(s)	268
BsmFI	GGGAC	1 cut(s)	633
BsnI	GGCC	2 cut(s)	173, 1253
BsoBI	CYCGRG	1 cut(s)	1213
Bsp1286I	GDGCHC	2 cut(s)	437, 472
Bsp1407I	TGTACA	1 cut(s)	1192
Bsp143I	GATC	2 cut(s)	1006, 1108
BspACI	CCGC	2 cut(s)	57, 1199
BspANI	GGCC	2 cut(s)	173, 1253
BspCNI	CTCAG	3 cut(s)	253, 622, 1078
BspDI	ATCGAT	1 cut(s)	319
BspLI	GGNNCC	3 cut(s)	297, 507, 784
BspMAI	CTGCAG	3 cut(s)	772, 1265, 1272
BspMI	ACCTGC	1 cut(s)	745
BspPI	GGATC	1 cut(s)	1103
BspT107I	GGYRCC	1 cut(s)	782
BsrFI	RCCGGY	1 cut(s)	6
BsrGI	TGTACA	1 cut(s)	1192
BsrI	ACTGG	2 cut(s)	358, 576
BssAI	RCCGGY	1 cut(s)	6
BssECI	CCNNGG	3 cut(s)	60, 501, 786
BssMI	GATC	2 cut(s)	1006, 1108
BssT1I	CCWWGG	1 cut(s)	501
Bst2UI	CCWGG	1 cut(s)	787
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	2 cut(s)	1016, 1032
BstAUI	TGTACA	1 cut(s)	1192
BstBAI	YACGTR	2 cut(s)	28, 818
BstC8I	GCNNGC	5 cut(s)	8, 86, 334, 414, 967
BstDEI	CTNAG	4 cut(s)	240, 630, 1086, 1148
BstF5I	GGATG	3 cut(s)	105, 521, 1195
BstKTI	GATC	2 cut(s)	1009, 1111
BstMAI	GTCTC	1 cut(s)	268
BstMBI	GATC	2 cut(s)	1006, 1108
BstMWI	GCNNNNNNNGC	4 cut(s)	16, 342, 422, 558
BstNI	CCWGG	1 cut(s)	787
BstNSI	RCATGY	3 cut(s)	340, 655, 1193
BstSCI	CCNGG	1 cut(s)	785
BstSFI	CTRYAG	3 cut(s)	768, 1261, 1268
BstSLI	GKGCMC	1 cut(s)	472
BstSNI	TACGTA	1 cut(s)	818
BstV2I	GAAGAC	1 cut(s)	1165
Bsu15I	ATCGAT	1 cut(s)	319
BsuRI	GGCC	2 cut(s)	173, 1253
BsuTUI	ATCGAT	1 cut(s)	319
BtrI	CACGTC	1 cut(s)	1204
BtsCI	GGATG	3 cut(s)	105, 521, 1195
BtsI	GCAGTG	1 cut(s)	479
BtsIMutI	CAGTG	2 cut(s)	479, 569
BveI	ACCTGC	1 cut(s)	745
Cac8I	GCNNGC	5 cut(s)	8, 86, 334, 414, 967
CaiI	CAGNNNCTG	1 cut(s)	731
Cfr10I	RCCGGY	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	506
ClaI	ATCGAT	1 cut(s)	319
Csp6I	GTAC	2 cut(s)	233, 1193
CviAII	CATG	4 cut(s)	337, 652, 1004, 1190
CviQI	GTAC	2 cut(s)	233, 1193
DdeI	CTNAG	4 cut(s)	240, 630, 1086, 1148
DpnI	GATC	2 cut(s)	1008, 1110
DpnII	GATC	2 cut(s)	1006, 1108
DraIII	CACNNNGTG	1 cut(s)	485
Eam1104I	CTCTTC	2 cut(s)	1016, 1032
EarI	CTCTTC	2 cut(s)	1016, 1032
Eco105I	TACGTA	1 cut(s)	818
Eco130I	CCWWGG	1 cut(s)	501
Eco24I	GRGCYC	1 cut(s)	437
Eco47I	GGWCC	1 cut(s)	506
Eco57I	CTGAAG	4 cut(s)	939, 948, 1056, 1209
Eco72I	CACGTG	1 cut(s)	28
Eco88I	CYCGRG	1 cut(s)	1213
EcoRII	CCWGG	1 cut(s)	785
EcoT14I	CCWWGG	1 cut(s)	501
EcoT38I	GRGCYC	1 cut(s)	437
ErhI	CCWWGG	1 cut(s)	501
FaeI	CATG	4 cut(s)	340, 655, 1007, 1193
FaqI	GGGAC	1 cut(s)	633
FatI	CATG	4 cut(s)	336, 651, 1003, 1189
FblI	GTMKAC	1 cut(s)	641
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	3 cut(s)	92, 508, 1182
FriOI	GRGCYC	1 cut(s)	437
Fsp4HI	GCNGC	1 cut(s)	57
FspBI	CTAG	1 cut(s)	278
GluI	GCNGC	1 cut(s)	57
GsaI	CCCAGC	1 cut(s)	748
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	2 cut(s)	173, 1253
HapII	CCGG	2 cut(s)	7, 134
Hin1II	CATG	4 cut(s)	340, 655, 1007, 1193
HincII	GTYRAC	2 cut(s)	374, 642
HindII	GTYRAC	2 cut(s)	374, 642
HindIII	AAGCTT	1 cut(s)	967
HinfI	GANTC	4 cut(s)	14, 321, 489, 1230
HpaII	CCGG	2 cut(s)	7, 134
Hpy166II	GTNNAC	4 cut(s)	374, 470, 642, 1054
Hpy188I	TCNGA	5 cut(s)	43, 243, 981, 1087, 1113
Hpy188III	TCNNGA	4 cut(s)	284, 299, 725, 1227
Hpy8I	GTNNAC	4 cut(s)	374, 470, 642, 1054
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	3 cut(s)	221, 840, 1233
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4IV	ACGT	4 cut(s)	27, 817, 1056, 1203
HpyF10VI	GCNNNNNNNGC	4 cut(s)	16, 342, 422, 558
HpyF3I	CTNAG	4 cut(s)	240, 630, 1086, 1148
HpySE526I	ACGT	4 cut(s)	27, 817, 1056, 1203
Hsp92II	CATG	4 cut(s)	340, 655, 1007, 1193
KroI	GCCGGC	1 cut(s)	6
KroNI	GCCGGC	1 cut(s)	8
Kzo9I	GATC	2 cut(s)	1006, 1108
LmnI	GCTCC	3 cut(s)	301, 558, 775
LweI	GCATC	1 cut(s)	530
MaeI	CTAG	1 cut(s)	278
MaeII	ACGT	4 cut(s)	27, 817, 1056, 1203
MaeIII	GTNAC	2 cut(s)	922, 1030
MalI	GATC	2 cut(s)	1008, 1110
MboI	GATC	2 cut(s)	1006, 1108
MboII	GAAGA	9 cut(s)	59, 134, 825, 941, 1003, 1049, 1120, 1167, 1170
MfeI	CAATTG	1 cut(s)	1075
MhlI	GDGCHC	2 cut(s)	437, 472
MlyI	GAGTC	1 cut(s)	1224
MmeI	TCCRAC	2 cut(s)	21, 136
MroNI	GCCGGC	1 cut(s)	6
MseI	TTAA	6 cut(s)	341, 674, 860, 882, 957, 972
MspI	CCGG	2 cut(s)	7, 134
MspR9I	CCNGG	1 cut(s)	787
MunI	CAATTG	1 cut(s)	1075
MvaI	CCWGG	1 cut(s)	787
MwoI	GCNNNNNNNGC	4 cut(s)	16, 342, 422, 558
NaeI	GCCGGC	1 cut(s)	8
NdeII	GATC	2 cut(s)	1006, 1108
NgoMIV	GCCGGC	1 cut(s)	6
NlaIII	CATG	4 cut(s)	340, 655, 1007, 1193
NlaIV	GGNNCC	3 cut(s)	297, 507, 784
NmeAIII	GCCGAG	1 cut(s)	85
NmuCI	GTSAC	1 cut(s)	922
NspI	RCATGY	3 cut(s)	340, 655, 1193
PaeR7I	CTCGAG	1 cut(s)	1213
PcsI	WCGNNNNNNNCGW	1 cut(s)	325
PdiI	GCCGGC	1 cut(s)	8
PfeI	GAWTC	3 cut(s)	14, 321, 489
PflMI	CCANNNNNTGG	1 cut(s)	485
PkrI	GCNGC	1 cut(s)	58
PleI	GAGTC	1 cut(s)	1224
PmaCI	CACGTG	1 cut(s)	28
PmlI	CACGTG	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	1224
Ppu21I	YACGTR	2 cut(s)	28, 818
PsiI	TTATAA	1 cut(s)	804
Psp6I	CCWGG	1 cut(s)	785
PspCI	CACGTG	1 cut(s)	28
PspFI	CCCAGC	1 cut(s)	744
PspGI	CCWGG	1 cut(s)	785
PspN4I	GGNNCC	3 cut(s)	297, 507, 784
PspPI	GGNCC	1 cut(s)	506
PspXI	VCTCGAGB	1 cut(s)	1213
PstI	CTGCAG	3 cut(s)	772, 1265, 1272
PstNI	CAGNNNCTG	1 cut(s)	731
RsaI	GTAC	2 cut(s)	234, 1194
RsaNI	GTAC	2 cut(s)	233, 1193
SalI	GTCGAC	1 cut(s)	640
SaqAI	TTAA	6 cut(s)	341, 674, 860, 882, 957, 972
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	2 cut(s)	1006, 1108
Sau96I	GGNCC	1 cut(s)	506
SchI	GAGTC	1 cut(s)	1224
ScrFI	CCNGG	1 cut(s)	787
SduI	GDGCHC	2 cut(s)	437, 472
SfaNI	GCATC	1 cut(s)	530
SfcI	CTRYAG	3 cut(s)	768, 1261, 1268
Sfr274I	CTCGAG	1 cut(s)	1213
SinI	GGWCC	1 cut(s)	506
SlaI	CTCGAG	1 cut(s)	1213
SmlI	CTYRAG	1 cut(s)	1213
SmoI	CTYRAG	1 cut(s)	1213
SnaBI	TACGTA	1 cut(s)	818
SpeI	ACTAGT	1 cut(s)	277
SsiI	CCGC	2 cut(s)	57, 1199
SspI	AATATT	1 cut(s)	763
SspMI	CTAG	1 cut(s)	278
StyD4I	CCNGG	1 cut(s)	785
StyI	CCWWGG	1 cut(s)	501
TaaI	ACNGT	1 cut(s)	202
TaiI	ACGT	4 cut(s)	30, 820, 1059, 1206
TaqI	TCGA	5 cut(s)	212, 319, 328, 641, 1214
TatI	WGTACW	1 cut(s)	1192
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	3 cut(s)	14, 321, 489
Tru1I	TTAA	6 cut(s)	341, 674, 860, 882, 957, 972
Tru9I	TTAA	6 cut(s)	341, 674, 860, 882, 957, 972
TscAI	CASTG	2 cut(s)	486, 576
TseFI	GTSAC	1 cut(s)	922
Tsp45I	GTSAC	1 cut(s)	922
TspDTI	ATGAA	1 cut(s)	825
TspGWI	ACGGA	1 cut(s)	933
TspRI	CASTG	2 cut(s)	486, 576
Van91I	CCANNNNNTGG	1 cut(s)	485
VneI	GTGCAC	1 cut(s)	468
VpaK11BI	GGWCC	1 cut(s)	506
XapI	RAATTY	3 cut(s)	385, 1022, 1180
XceI	RCATGY	3 cut(s)	340, 655, 1193
XcmI	CCANNNNNNNNNTGG	1 cut(s)	508
XhoI	CTCGAG	1 cut(s)	1213
XmiI	GTMKAC	1 cut(s)	641
XspI	CTAG	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.