Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0007130

Physical Location & Seq

Genomic Coordinates Reverse (-)

27213871 .. 27217448

Gene Structure 3578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g24240.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGTGCCGGCAGGAGGAGCGGGTGCGGATGTCGTCGGAGGAAGAAATTGCGGCGGAGGAGAGCCTCTCTGTCTATTGCAAGCCTGTCGAGTTCTATAACATTCTCCAACGCCGCGCTATTAGAAATCCAGCGTTTCTTCAGAGATGTTTGAGCTACAAAATAGAGGCCAAACACAAAAGGAGGATACAAATGACGGTTTCCATTTCGATGAATGAGATGGAAGGTCTACAAACCCAGAATCTCTTTCCTTTGTATGTGTTTTTGGCCAGACTAGTTCCTGATGTTGCGGTTCCAGAGTATTCTTCTACATATCGATTCAGTCGAGCTTGCATGTTAAGTAATTCCACTGGGGTTGATGGGAGTAGTCAACTGCAAGCAAATTTTATTCTGCCAGATATTAATAAGCTAACATTGGAGGCTAAATCTGGCTCCCTTGCAATCTTGCTCGTCAGCTTTGTGGGAGCTCAAAACCCATTTCGTGGAATCAATTTATCCAAGGGTCCTGTGGATATGTCTTTTTTCCCTTCAAATGCAGGAGGATATTGTCTATGGAACAAGATACCACTTGAATTACTTTATATCTCTTGGGAGAATTCTCCTAATTTTGGTTTGGGACAGAGAGCTGAGATGATTTCAACGATTGACATGCGCTCTTGCTTCTTGAAGTTGAGCTGTTTAAATGAGGACAAGTGCCTTATGATTGCAACTCCCCCTAATCCTGAAACTGTTGTCATTTCTCAGCTAGTGCAGGTCACCATTTCTGCAGAGGAGTTTGGTGCGAGGGAAAAATCTCCTTATAATAGTACATACATATGTAGCGACATTCCTTCTTCATCATTGCCTCATATCATTCGGTTAAGGGCAGGAAATGTGATTTTTAATTATAGATACTACAACAATACATTGCAAAGGACAGAAGTAACTGAAGACTTTTCTTGTCCATTTTGCTTGGTTAGGTGTGCAAGCTTCAAGGGTCTGAGACATCATTTGTTCTCATCACATGATCGATCTTCAACTTTGAATTTTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006349 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031490 GO:0034641 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0071514 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VEFS-Box

Protein Analysis

344

Amino Acids

38.84

Weight (kDa)

8.21

Isoelectric Point (pI)

60.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51230 AT5G51230 AT5G51230
fragaria_vesca	FvH4_3g17191
malus_domestica	MD03G1252500.v1.1 MD11G1274700.v1.1
prunus_persica	Prupe.4G152500_v2.0.a1 Prupe.4G152500_v2.0.a1 Prupe.4G152500_v2.0.a1 Prupe.4G152500_v2.0.a1 Prupe.4G152500_v2.0.a1
pyrus_communis	pycom03g20030 pycom11g24240
rosa_chinensis	RchiOBHm_Chr5g0028591
rosa_laevigata	RLG00000033102 RLG00000033103 RLG00000033104
rosa_multiflora	Rmu_sc0001575.1_g000016
rosa_roxburghii	Rroxscaffold_1G00051190
rosa_rugosa	Rorug05G0109700
rosa_samantha	Rh5AG201800 Rh5BG200000 Rh5CG220300 Rh5DG203200
rosa_wichuraiana	Rw5G018290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	798
Acc36I	ACCTGC	1 cut(s)	739
AccB7I	CCANNNNNTGG	1 cut(s)	479
AccBSI	CCGCTC	1 cut(s)	19
AccI	GTMKAC	1 cut(s)	226
AccII	CGCG	1 cut(s)	114
AciI	CCGC	6 cut(s)	19, 25, 50, 53, 112, 287
AcoI	YGGCCR	1 cut(s)	264
AcsI	RAATTY	3 cut(s)	379, 592, 1021
AcuI	CTGAAG	2 cut(s)	122, 945
AfaI	GTAC	1 cut(s)	805
AfiI	CCNNNNNNNGG	3 cut(s)	13, 479, 605
AgsI	TTSAA	7 cut(s)	528, 569, 636, 664, 970, 1014, 1021
AhlI	ACTAGT	1 cut(s)	271
AluBI	AGCT	9 cut(s)	153, 326, 406, 453, 464, 623, 672, 742, 966
AluI	AGCT	9 cut(s)	153, 326, 406, 453, 464, 623, 672, 742, 966
Alw21I	GWGCWC	1 cut(s)	466
Alw26I	GTCTC	1 cut(s)	973
AoxI	GGCC	2 cut(s)	165, 264
ApoI	RAATTY	3 cut(s)	379, 592, 1021
AseI	ATTAAT	1 cut(s)	399
AspLEI	GCGC	2 cut(s)	116, 651
AspS9I	GGNCC	1 cut(s)	500
AsuHPI	GGTGA	1 cut(s)	745
AvaII	GGWCC	1 cut(s)	500
BalI	TGGCCA	1 cut(s)	266
BanII	GRGCYC	1 cut(s)	466
BbsI	GAAGAC	1 cut(s)	933
Bbv12I	GWGCWC	1 cut(s)	466
BccI	CCATC	2 cut(s)	211, 350
BcgI	CGANNNNNNTGC	4 cut(s)	67, 101, 628, 662
BciVI	GTATCC	1 cut(s)	177
BcoDI	GTCTC	1 cut(s)	973
BcuI	ACTAGT	1 cut(s)	271
BfaI	CTAG	2 cut(s)	272, 743
BfmI	CTRYAG	1 cut(s)	762
BfuAI	ACCTGC	1 cut(s)	739
BfuI	GTATCC	1 cut(s)	177
BisI	GCNGC	2 cut(s)	51, 112
BlsI	GCNGC	2 cut(s)	52, 113
Bme18I	GGWCC	1 cut(s)	500
BmgT120I	GGNCC	1 cut(s)	500
BmiI	GGNNCC	3 cut(s)	291, 430, 501
BmrI	ACTGGG	1 cut(s)	357
BmuI	ACTGGG	1 cut(s)	357
BpiI	GAAGAC	1 cut(s)	933
BplI	GAGNNNNNCTC	2 cut(s)	50, 82
Bsa29I	ATCGAT	2 cut(s)	313, 1006
BsaJI	CCNNGG	1 cut(s)	495
Bsc4I	CCNNNNNNNGG	3 cut(s)	13, 479, 605
Bse118I	RCCGGY	1 cut(s)	6
Bse1I	ACTGG	1 cut(s)	352
Bse3DI	GCAATG	2 cut(s)	836, 902
BseCI	ATCGAT	2 cut(s)	313, 1006
BseDI	CCNNGG	1 cut(s)	495
BseGI	GGATG	1 cut(s)	33
BseLI	CCNNNNNNNGG	3 cut(s)	13, 479, 605
BseMI	GCAATG	2 cut(s)	836, 902
BseMII	CTCAG	3 cut(s)	615, 752, 968
BseNI	ACTGG	1 cut(s)	352
BseRI	GAGGAG	3 cut(s)	29, 71, 782
BsgI	GTGCAG	1 cut(s)	767
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	2 cut(s)	167, 266
BshVI	ATCGAT	2 cut(s)	313, 1006
BsiHKAI	GWGCWC	1 cut(s)	466
BsiSI	CCGG	1 cut(s)	7
BslFI	GGGAC	1 cut(s)	627
BslI	CCNNNNNNNGG	3 cut(s)	13, 479, 605
BsmAI	GTCTC	1 cut(s)	973
BsmFI	GGGAC	1 cut(s)	627
BsnI	GGCC	2 cut(s)	167, 266
Bsp1286I	GDGCHC	1 cut(s)	466
Bsp143I	GATC	2 cut(s)	1003, 1007
BspACI	CCGC	6 cut(s)	19, 25, 50, 53, 112, 287
BspANI	GGCC	2 cut(s)	167, 266
BspCNI	CTCAG	3 cut(s)	616, 751, 969
BspDI	ATCGAT	2 cut(s)	313, 1006
BspFNI	CGCG	1 cut(s)	114
BspLI	GGNNCC	3 cut(s)	291, 430, 501
BspMAI	CTGCAG	1 cut(s)	766
BspMI	ACCTGC	1 cut(s)	739
BsrBI	CCGCTC	1 cut(s)	19
BsrDI	GCAATG	2 cut(s)	836, 902
BsrFI	RCCGGY	1 cut(s)	6
BsrI	ACTGG	1 cut(s)	352
BssAI	RCCGGY	1 cut(s)	6
BssECI	CCNNGG	1 cut(s)	495
BssMI	GATC	2 cut(s)	1003, 1007
BssT1I	CCWWGG	1 cut(s)	495
Bst4CI	ACNGT	2 cut(s)	196, 727
BstC8I	GCNNGC	5 cut(s)	8, 80, 328, 375, 964
BstDEI	CTNAG	3 cut(s)	624, 738, 977
BstEII	GGTNACC	1 cut(s)	751
BstF5I	GGATG	1 cut(s)	33
BstFNI	CGCG	1 cut(s)	114
BstHHI	GCGC	2 cut(s)	116, 651
BstKTI	GATC	2 cut(s)	1006, 1010
BstMAI	GTCTC	1 cut(s)	973
BstMBI	GATC	2 cut(s)	1003, 1007
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstNSI	RCATGY	2 cut(s)	334, 649
BstPI	GGTNACC	1 cut(s)	751
BstSFI	CTRYAG	1 cut(s)	762
BstUI	CGCG	1 cut(s)	114
BstV2I	GAAGAC	1 cut(s)	933
Bsu15I	ATCGAT	2 cut(s)	313, 1006
BsuI	GTATCC	1 cut(s)	177
BsuRI	GGCC	2 cut(s)	167, 266
BsuTUI	ATCGAT	2 cut(s)	313, 1006
BtsCI	GGATG	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	345
BveI	ACCTGC	1 cut(s)	739
Cac8I	GCNNGC	5 cut(s)	8, 80, 328, 375, 964
CfoI	GCGC	2 cut(s)	116, 651
Cfr10I	RCCGGY	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	500
ClaI	ATCGAT	2 cut(s)	313, 1006
Csp6I	GTAC	1 cut(s)	804
CspCI	CAANNNNNGTGG	2 cut(s)	334, 369
CviAII	CATG	3 cut(s)	331, 646, 1001
CviQI	GTAC	1 cut(s)	804
DdeI	CTNAG	3 cut(s)	624, 738, 977
DpnI	GATC	2 cut(s)	1005, 1009
DpnII	GATC	2 cut(s)	1003, 1007
DraI	TTTAAA	1 cut(s)	678
EaeI	YGGCCR	1 cut(s)	264
EciI	GGCGGA	1 cut(s)	68
Ecl136II	GAGCTC	1 cut(s)	464
Eco130I	CCWWGG	1 cut(s)	495
Eco24I	GRGCYC	1 cut(s)	466
Eco47I	GGWCC	1 cut(s)	500
Eco53kI	GAGCTC	1 cut(s)	464
Eco57I	CTGAAG	2 cut(s)	122, 945
Eco91I	GGTNACC	1 cut(s)	751
EcoICRI	GAGCTC	1 cut(s)	464
EcoO109I	RGGNCCY	1 cut(s)	500
EcoO65I	GGTNACC	1 cut(s)	751
EcoRI	GAATTC	1 cut(s)	592
EcoT14I	CCWWGG	1 cut(s)	495
EcoT38I	GRGCYC	1 cut(s)	466
ErhI	CCWWGG	1 cut(s)	495
FaeI	CATG	3 cut(s)	334, 649, 1004
FaqI	GGGAC	1 cut(s)	627
FatI	CATG	3 cut(s)	330, 645, 1000
FauI	CCCGC	1 cut(s)	12
FauNDI	CATATG	1 cut(s)	812
FblI	GTMKAC	1 cut(s)	226
Fnu4HI	GCNGC	2 cut(s)	51, 112
FokI	GGATG	1 cut(s)	40
FriOI	GRGCYC	1 cut(s)	466
Fsp4HI	GCNGC	2 cut(s)	51, 112
FspBI	CTAG	2 cut(s)	272, 743
GlaI	GCGC	2 cut(s)	115, 650
GluI	GCNGC	2 cut(s)	51, 112
HaeIII	GGCC	2 cut(s)	167, 266
HapII	CCGG	1 cut(s)	7
HhaI	GCGC	2 cut(s)	116, 651
Hin1II	CATG	3 cut(s)	334, 649, 1004
Hin6I	GCGC	2 cut(s)	114, 649
HinP1I	GCGC	2 cut(s)	114, 649
HincII	GTYRAC	1 cut(s)	368
HindII	GTYRAC	1 cut(s)	368
HindIII	AAGCTT	1 cut(s)	964
HinfI	GANTC	3 cut(s)	238, 315, 483
HpaII	CCGG	1 cut(s)	7
HphI	GGTGA	1 cut(s)	745
Hpy166II	GTNNAC	2 cut(s)	227, 368
Hpy188I	TCNGA	3 cut(s)	37, 141, 978
Hpy188III	TCNNGA	4 cut(s)	278, 293, 661, 719
Hpy8I	GTNNAC	2 cut(s)	227, 368
Hpy99I	CGWCG	1 cut(s)	37
HpyAV	CCTTC	3 cut(s)	215, 534, 837
HpyCH4III	ACNGT	2 cut(s)	196, 727
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpyF3I	CTNAG	3 cut(s)	624, 738, 977
Hsp92II	CATG	3 cut(s)	334, 649, 1004
HspAI	GCGC	2 cut(s)	114, 649
KroI	GCCGGC	1 cut(s)	6
KroNI	GCCGGC	1 cut(s)	8
Kzo9I	GATC	2 cut(s)	1003, 1007
LmnI	GCTCC	3 cut(s)	16, 434, 461
MaeI	CTAG	2 cut(s)	272, 743
MaeIII	GTNAC	2 cut(s)	751, 919
MalI	GATC	2 cut(s)	1005, 1009
MbiI	CCGCTC	1 cut(s)	19
MboI	GATC	2 cut(s)	1003, 1007
MboII	GAAGA	6 cut(s)	53, 128, 294, 822, 938, 1002
MhlI	GDGCHC	1 cut(s)	466
MlsI	TGGCCA	1 cut(s)	266
MluCI	AATT	9 cut(s)	45, 340, 379, 487, 569, 592, 601, 880, 1021
MluNI	TGGCCA	1 cut(s)	266
MmeI	TCCRAC	2 cut(s)	15, 130
Mox20I	TGGCCA	1 cut(s)	266
MroNI	GCCGGC	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	266
MseI	TTAA	5 cut(s)	335, 399, 677, 857, 879
MslI	CAYNNNNRTG	2 cut(s)	206, 811
Msp20I	TGGCCA	1 cut(s)	266
MspI	CCGG	1 cut(s)	7
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	1 cut(s)	16
NaeI	GCCGGC	1 cut(s)	8
NdeI	CATATG	1 cut(s)	812
NdeII	GATC	2 cut(s)	1003, 1007
NgoMIV	GCCGGC	1 cut(s)	6
NlaIII	CATG	3 cut(s)	334, 649, 1004
NlaIV	GGNNCC	3 cut(s)	291, 430, 501
NmuCI	GTSAC	1 cut(s)	751
NspI	RCATGY	2 cut(s)	334, 649
PcsI	WCGNNNNNNNCGW	1 cut(s)	319
PdiI	GCCGGC	1 cut(s)	8
PfeI	GAWTC	3 cut(s)	238, 315, 483
PflMI	CCANNNNNTGG	1 cut(s)	479
PkrI	GCNGC	2 cut(s)	52, 113
PpuMI	RGGWCCY	1 cut(s)	500
PshBI	ATTAAT	1 cut(s)	399
PsiI	TTATAA	1 cut(s)	798
Psp124BI	GAGCTC	1 cut(s)	466
Psp5II	RGGWCCY	1 cut(s)	500
PspEI	GGTNACC	1 cut(s)	751
PspN4I	GGNNCC	3 cut(s)	291, 430, 501
PspPI	GGNCC	1 cut(s)	500
PspPPI	RGGWCCY	1 cut(s)	500
PstI	CTGCAG	1 cut(s)	766
RsaI	GTAC	1 cut(s)	805
RsaNI	GTAC	1 cut(s)	804
RseI	CAYNNNNRTG	2 cut(s)	206, 811
SacI	GAGCTC	1 cut(s)	466
SaqAI	TTAA	5 cut(s)	335, 399, 677, 857, 879
SatI	GCNGC	2 cut(s)	51, 112
Sau3AI	GATC	2 cut(s)	1003, 1007
Sau96I	GGNCC	1 cut(s)	500
SduI	GDGCHC	1 cut(s)	466
SfcI	CTRYAG	1 cut(s)	762
SinI	GGWCC	1 cut(s)	500
SmiMI	CAYNNNNRTG	2 cut(s)	206, 811
SpeI	ACTAGT	1 cut(s)	271
Sse9I	AATT	9 cut(s)	45, 340, 379, 487, 569, 592, 601, 880, 1021
SsiI	CCGC	6 cut(s)	19, 25, 50, 53, 112, 287
SspMI	CTAG	2 cut(s)	272, 743
SstI	GAGCTC	1 cut(s)	466
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	2 cut(s)	196, 727
TaqI	TCGA	5 cut(s)	87, 206, 313, 322, 1006
TasI	AATT	9 cut(s)	45, 340, 379, 487, 569, 592, 601, 880, 1021
TatI	WGTACW	1 cut(s)	803
TauI	GCSGC	2 cut(s)	53, 114
TfiI	GAWTC	3 cut(s)	238, 315, 483
Tru1I	TTAA	5 cut(s)	335, 399, 677, 857, 879
Tru9I	TTAA	5 cut(s)	335, 399, 677, 857, 879
TscAI	CASTG	1 cut(s)	352
TseFI	GTSAC	1 cut(s)	751
Tsp45I	GTSAC	1 cut(s)	751
TspDTI	ATGAA	2 cut(s)	224, 822
TspRI	CASTG	1 cut(s)	352
Van91I	CCANNNNNTGG	1 cut(s)	479
VpaK11BI	GGWCC	1 cut(s)	500
VspI	ATTAAT	1 cut(s)	399
XapI	RAATTY	3 cut(s)	379, 592, 1021
XceI	RCATGY	2 cut(s)	334, 649
XcmI	CCANNNNNNNNNTGG	1 cut(s)	502
XmiI	GTMKAC	1 cut(s)	226
XspI	CTAG	2 cut(s)	272, 743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.