Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007130

Physical Location & Seq

Genomic Coordinates Forward (+)

9775073 .. 9776056

Gene Structure 984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0109700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGACACCGAACTTCCCACCATAAAAAGCCTACCAGCAATAATCATACGTAGAAATTCATCTACAAGCAGCAGACCGGACCAAGACATCGAAGATGATCCACAATTCCGATATACGAGCTTGAAGGACATCATATGGCACTCACCACAAAGCAGCACGGCAGTTTCAGAAGAACCATGGAACTATGAGTTCGACCCCTCCAACATTACAATCCGAAACCAGTTGGTGAAGCGCGCGGCCTCGGCTTACGTGCAGTCTGCGGCGATACTAGCCTGCACTCGAAACCAAAGCATCTTAGTGAGCTTCTGGGGGAGGCTTCTGAGGGGGCATTGCGAGGGTTTGAGTTCGGGATGGGATACATATATTAGGAGCCCTATAGAAGCTTGCCTGAGGCCTATTTTACAGTTTTTTGCTTGCATGGTGGGCAATGTGAGGAGTACATTGAACAATTCGGCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006349 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031490 GO:0034641 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0071514 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VEFS-Box

Protein Analysis

153

Amino Acids

17.21

Weight (kDa)

6.72

Isoelectric Point (pI)

88.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51230 AT5G51230 AT5G51230
fragaria_vesca	FvH4_3g17191
malus_domestica	MD03G1252500.v1.1 MD11G1274700.v1.1
prunus_persica	Prupe.4G152500_v2.0.a1 Prupe.4G152500_v2.0.a1 Prupe.4G152500_v2.0.a1 Prupe.4G152500_v2.0.a1 Prupe.4G152500_v2.0.a1
pyrus_communis	pycom03g20030 pycom11g24240
rosa_chinensis	RchiOBHm_Chr5g0028591
rosa_laevigata	RLG00000033102 RLG00000033103 RLG00000033104
rosa_multiflora	Rmu_sc0001575.1_g000016
rosa_roxburghii	Rroxscaffold_1G00051190
rosa_rugosa	Rorug05G0109700
rosa_samantha	Rh5AG201800 Rh5BG200000 Rh5CG220300 Rh5DG203200
rosa_wichuraiana	Rw5G018290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	234, 236
AciI	CCGC	2 cut(s)	236, 260
AclWI	GGATC	1 cut(s)	92
AcsI	RAATTY	1 cut(s)	55
AfaI	GTAC	1 cut(s)	439
AgsI	TTSAA	2 cut(s)	124, 445
AluBI	AGCT	3 cut(s)	120, 303, 383
AluI	AGCT	3 cut(s)	120, 303, 383
AlwI	GGATC	1 cut(s)	92
AoxI	GGCC	2 cut(s)	237, 392
ApeKI	GCWGC	2 cut(s)	69, 153
ApoI	RAATTY	1 cut(s)	55
AspLEI	GCGC	2 cut(s)	234, 236
AspS9I	GGNCC	1 cut(s)	79
AsuHPI	GGTGA	2 cut(s)	135, 238
AvaII	GGWCC	1 cut(s)	79
AxyI	CCTNAGG	1 cut(s)	389
BanII	GRGCYC	1 cut(s)	374
BbvI	GCAGC	2 cut(s)	81, 165
BccI	CCATC	1 cut(s)	345
BceAI	ACGGC	1 cut(s)	174
BciVI	GTATCC	1 cut(s)	349
BfaI	CTAG	1 cut(s)	269
BfmI	CTRYAG	1 cut(s)	375
BfuI	GTATCC	1 cut(s)	349
BisI	GCNGC	4 cut(s)	70, 154, 237, 261
BlsI	GCNGC	4 cut(s)	71, 155, 238, 262
Bme18I	GGWCC	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	371
BmsI	GCATC	1 cut(s)	300
BsaAI	YACGTR	2 cut(s)	50, 250
BsaJI	CCNNGG	2 cut(s)	176, 240
BsaWI	WCCGGW	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	220
Bse21I	CCTNAGG	1 cut(s)	389
Bse3DI	GCAATG	2 cut(s)	328, 433
BseDI	CCNNGG	2 cut(s)	176, 240
BseGI	GGATG	1 cut(s)	356
BseMI	GCAATG	2 cut(s)	328, 433
BseMII	CTCAG	2 cut(s)	311, 380
BseNI	ACTGG	1 cut(s)	220
BsePI	GCGCGC	1 cut(s)	232
BseRI	GAGGAG	1 cut(s)	448
BseXI	GCAGC	2 cut(s)	81, 165
BsgI	GTGCAG	2 cut(s)	259, 272
Bsh1236I	CGCG	2 cut(s)	234, 236
BshFI	GGCC	2 cut(s)	239, 394
BsiSI	CCGG	1 cut(s)	77
BsnI	GGCC	2 cut(s)	239, 394
Bsp1286I	GDGCHC	1 cut(s)	374
Bsp143I	GATC	1 cut(s)	97
Bsp19I	CCATGG	1 cut(s)	176
BspACI	CCGC	2 cut(s)	236, 260
BspANI	GGCC	2 cut(s)	239, 394
BspCNI	CTCAG	2 cut(s)	312, 381
BspFNI	CGCG	2 cut(s)	234, 236
BspLI	GGNNCC	1 cut(s)	371
BspPI	GGATC	1 cut(s)	92
BsrDI	GCAATG	2 cut(s)	328, 433
BsrI	ACTGG	1 cut(s)	220
BssECI	CCNNGG	2 cut(s)	176, 240
BssHII	GCGCGC	1 cut(s)	232
BssMI	GATC	1 cut(s)	97
BssT1I	CCWWGG	1 cut(s)	176
Bst4CI	ACNGT	1 cut(s)	405
BstBAI	YACGTR	2 cut(s)	50, 250
BstC8I	GCNNGC	4 cut(s)	234, 274, 385, 415
BstDEI	CTNAG	3 cut(s)	295, 320, 389
BstDSI	CCRYGG	1 cut(s)	176
BstF5I	GGATG	1 cut(s)	356
BstFNI	CGCG	2 cut(s)	234, 236
BstHHI	GCGC	2 cut(s)	234, 236
BstKTI	GATC	1 cut(s)	100
BstMBI	GATC	1 cut(s)	97
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 269, 423
BstSFI	CTRYAG	1 cut(s)	375
BstSNI	TACGTA	1 cut(s)	50
BstUI	CGCG	2 cut(s)	234, 236
BstV1I	GCAGC	2 cut(s)	81, 165
Bsu36I	CCTNAGG	1 cut(s)	389
BsuI	GTATCC	1 cut(s)	349
BsuRI	GGCC	2 cut(s)	239, 394
BtgI	CCRYGG	1 cut(s)	176
BtsCI	GGATG	1 cut(s)	356
Cac8I	GCNNGC	4 cut(s)	234, 274, 385, 415
CfoI	GCGC	2 cut(s)	234, 236
Cfr13I	GGNCC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	438
CviAII	CATG	2 cut(s)	177, 418
CviQI	GTAC	1 cut(s)	438
DdeI	CTNAG	3 cut(s)	295, 320, 389
DpnI	GATC	1 cut(s)	99
DpnII	GATC	1 cut(s)	97
Eco105I	TACGTA	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	176
Eco147I	AGGCCT	1 cut(s)	394
Eco24I	GRGCYC	1 cut(s)	374
Eco47I	GGWCC	1 cut(s)	79
Eco81I	CCTNAGG	1 cut(s)	389
EcoT14I	CCWWGG	1 cut(s)	176
EcoT38I	GRGCYC	1 cut(s)	374
ErhI	CCWWGG	1 cut(s)	176
FaeI	CATG	2 cut(s)	180, 421
FatI	CATG	2 cut(s)	176, 417
FauNDI	CATATG	1 cut(s)	134
Fnu4HI	GCNGC	4 cut(s)	70, 154, 237, 261
FokI	GGATG	1 cut(s)	363
FriOI	GRGCYC	1 cut(s)	374
Fsp4HI	GCNGC	4 cut(s)	70, 154, 237, 261
FspBI	CTAG	1 cut(s)	269
GlaI	GCGC	2 cut(s)	233, 235
GluI	GCNGC	4 cut(s)	70, 154, 237, 261
HaeIII	GGCC	2 cut(s)	239, 394
HapII	CCGG	1 cut(s)	77
HhaI	GCGC	2 cut(s)	234, 236
Hin1II	CATG	2 cut(s)	180, 421
Hin6I	GCGC	2 cut(s)	232, 234
HinP1I	GCGC	2 cut(s)	232, 234
HindIII	AAGCTT	1 cut(s)	381
HpaII	CCGG	1 cut(s)	77
HphI	GGTGA	2 cut(s)	135, 238
Hpy188I	TCNGA	4 cut(s)	110, 169, 215, 321
Hpy188III	TCNNGA	2 cut(s)	348, 459
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	1 cut(s)	405
HpyCH4IV	ACGT	2 cut(s)	49, 249
HpyCH4V	TGCA	3 cut(s)	253, 276, 417
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 269, 423
HpyF3I	CTNAG	3 cut(s)	295, 320, 389
HpySE526I	ACGT	2 cut(s)	49, 249
Hsp92II	CATG	2 cut(s)	180, 421
HspAI	GCGC	2 cut(s)	232, 234
Kzo9I	GATC	1 cut(s)	97
LmnI	GCTCC	1 cut(s)	369
LpnPI	CCDG	6 cut(s)	48, 90, 233, 286, 292, 401
Lsp1109I	GCAGC	2 cut(s)	81, 165
LweI	GCATC	1 cut(s)	300
MaeI	CTAG	1 cut(s)	269
MaeII	ACGT	2 cut(s)	49, 249
MalI	GATC	1 cut(s)	99
MboI	GATC	1 cut(s)	97
MboII	GAAGA	2 cut(s)	104, 182
MhlI	GDGCHC	1 cut(s)	374
MluCI	AATT	3 cut(s)	55, 104, 448
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	7 cut(s)	208, 250, 306, 315, 328, 384, 426
MslI	CAYNNNNRTG	1 cut(s)	296
MspI	CCGG	1 cut(s)	77
MvnI	CGCG	2 cut(s)	234, 236
MwoI	GCNNNNNNNGC	3 cut(s)	242, 269, 423
NcoI	CCATGG	1 cut(s)	176
NdeI	CATATG	1 cut(s)	134
NdeII	GATC	1 cut(s)	97
NlaIII	CATG	2 cut(s)	180, 421
NlaIV	GGNNCC	1 cut(s)	371
NmeAIII	GCCGAG	1 cut(s)	221
PauI	GCGCGC	1 cut(s)	232
PceI	AGGCCT	1 cut(s)	394
PkrI	GCNGC	4 cut(s)	71, 155, 238, 262
Ppu21I	YACGTR	2 cut(s)	50, 250
PspN4I	GGNNCC	1 cut(s)	371
PspPI	GGNCC	1 cut(s)	79
PteI	GCGCGC	1 cut(s)	232
RsaI	GTAC	1 cut(s)	439
RsaNI	GTAC	1 cut(s)	438
RseI	CAYNNNNRTG	1 cut(s)	296
SatI	GCNGC	4 cut(s)	70, 154, 237, 261
Sau3AI	GATC	1 cut(s)	97
Sau96I	GGNCC	1 cut(s)	79
SduI	GDGCHC	1 cut(s)	374
SetI	ASST	5 cut(s)	52, 122, 252, 305, 385
SfaNI	GCATC	1 cut(s)	300
SfcI	CTRYAG	1 cut(s)	375
SinI	GGWCC	1 cut(s)	79
SmiMI	CAYNNNNRTG	1 cut(s)	296
SnaBI	TACGTA	1 cut(s)	50
Sse9I	AATT	3 cut(s)	55, 104, 448
SseBI	AGGCCT	1 cut(s)	394
SsiI	CCGC	2 cut(s)	236, 260
SspMI	CTAG	1 cut(s)	269
StuI	AGGCCT	1 cut(s)	394
StyI	CCWWGG	1 cut(s)	176
TaaI	ACNGT	1 cut(s)	405
TaiI	ACGT	2 cut(s)	52, 252
TaqI	TCGA	3 cut(s)	90, 192, 280
TasI	AATT	3 cut(s)	55, 104, 448
TatI	WGTACW	1 cut(s)	437
TauI	GCSGC	2 cut(s)	239, 263
TseI	GCWGC	2 cut(s)	69, 153
TspDTI	ATGAA	1 cut(s)	48
VpaK11BI	GGWCC	1 cut(s)	79
XapI	RAATTY	1 cut(s)	55
XspI	CTAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.