RLG00000033102

Polycomb group protein EMBRYONIC FLOWER

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
23341643 .. 23346642
5000 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033102

Sequence Viewer

Length: 1437 bp
ATGGGAAAGAGGCCTAGGGCGGTGCTTTACAGTAGAAGAATCACTGAGCGTGAATCGCAGCAGAGATTCCGATACAAGAGCTCAAATTTCGATGAAGAAGAAGCCTCTCCGAACCAAAGACGCAGAACAAGCACAAACCCCAATCCACCCAACTTTCTCATCTTCATCTTCAGCTTCAATTCCACCTCCTGGCTCCGTCTGTTCTCTTTCGCTTTCTCGTACGCTCGAACCGTCGGGAGTAACATGTGCCGGCAAGAATCGCAATCGCACGTGCGAATGTCGTCGGAGGAAGAAATCGCCGCCGAGGAGAGCCTCTCTATCTATTGCAAGCCTGTTGAGTTCTATAACATCCTCCAACGCCGTGCTATAAGAAATCCGGCTTTTCTTCAAAGATGTTTGAGCTACAAAAGAGAGGCCAAGCACAAAAAGAGAATACAAATGACAGTTTCAGTTTCGAGGAATGAGCGAGAAGGTGTACAGACTCAGAAGCTGTTTCCTTTGTATGTGTTTTTGGCGAGGCTAGTTCCTGATGTTGTGGCTCCAGAGTATAATGCTACATATCGATTCAGTCGAGCTTGCATGTTAAGCAATTCAACTGGGGTTGATGGGAGTGGTCAACATCAAGCAAATTTTATTCTGCCTGACATCAACAAGCTCGCATTGGAGGCTAAATCGGGCTCACTTGCCATTTTGCTTGTTAGCTTTGTGGGTGCACAAAATCCACTGCGTGGAATCAATTTGTCCAAGGGTCCAATGGATATGGCATCCTCTCCCGCAAATGTAGGAGGGTATTGCCTATGGAGCAAGATACCTCTGGAATTACTTTATATATCATGGGAGAGTTCTCCTAATTTTGGTTTGGGACAGAGAGCTGAGTTGATGTCGACTATTGACATGCAATCTTGCTTTTTGAAGTTAAGTTGTTCAAATGAGGACAAGTGCCTTATGATTGCAATTCCCTATAATCCAGAAACTGCTATCATATCCCAGCAAGTGCAGGTCAATATTTCTGCAGAGGAGCTTGGTGCCAGGGAAAAATCTCCTTATAATACATACATACGTAATGACATTCCTTCTTCATCGTTAGCTCATATCATTCGGTTAAGGGCAGGAAATGTGATTTTTAATTATAGATACTACAACAATACGTTGCAAAGGACAGAAGTGACTGAAGATTTTTCCTGTCCGTTTTGTTTGGTTAAATGTGCAAGCTTTAAGGGTCTGAAATATCATCTGCTCTCATCACATGATCTCTTCAACTTTGAATTTTGGGTAACTGAAGAGTGTCAAGCTGTAAACGTGTCTGTGAAAACTGACAATTGGACATCTGAGATTGTTGCTGATGGTGTTGATCCGAAGCTACAAGTATTCTTCTTTTGGAAAGTCATACCATGTCCAGCTCAAAGCCGCTTAGACGAAGAAGACCCAAGAGCCTAA

Protein Analysis

479

Amino Acids

54.6

Weight (kDa)

8.77

Isoelectric Point (pI)

56.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7651 PF24663 134 - 344 5e-91 Domain of unknown function (DUF7651)
Zn_SUZ12 PF23320 371 - 439 6e-34 Polycomb protein SUZ12-like, Zn domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1047
Acc36I ACCTGC 1 cut(s) 988
AccB1I GGYRCC 1 cut(s) 1025
AccB7I CCANNNNNTGG 2 cut(s) 189, 728
AccI GTMKAC 1 cut(s) 884
AciI CCGC 4 cut(s) 20, 300, 774, 1408
AclWI GGATC 1 cut(s) 1346
AcsI RAATTY 3 cut(s) 85, 628, 1265
AcuI CTGAAG 3 cut(s) 154, 1191, 1299
AcvI CACGTG 1 cut(s) 271
AdeI CACNNNGTG 1 cut(s) 728
AfaI GTAC 2 cut(s) 221, 477
AfiI CCNNNNNNNGG 3 cut(s) 189, 728, 854
AflIII ACRYGT 2 cut(s) 243, 1299
AgsI TTSAA 7 cut(s) 178, 389, 594, 913, 927, 1258, 1265
AjnI CCWGG 2 cut(s) 188, 1028
Alw21I GWGCWC 2 cut(s) 83, 715
Alw44I GTGCAC 1 cut(s) 711
AlwI GGATC 1 cut(s) 1346
AlwNI CAGNNNCTG 2 cut(s) 490, 974
AoxI GGCC 2 cut(s) 11, 414
ApaLI GTGCAC 1 cut(s) 711
ApeKI GCWGC 1 cut(s) 58
ApoI RAATTY 3 cut(s) 85, 628, 1265
AspA2I CCTAGG 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 749
AvaII GGWCC 1 cut(s) 749
AvrII CCTAGG 1 cut(s) 14
BaeGI GKGCMC 1 cut(s) 715
BanI GGYRCC 1 cut(s) 1025
BanII GRGCYC 2 cut(s) 83, 680
BbrPI CACGTG 1 cut(s) 271
BbsI GAAGAC 1 cut(s) 1428
Bbv12I GWGCWC 2 cut(s) 83, 715
BbvI GCAGC 1 cut(s) 70
BccI CCATC 2 cut(s) 599, 1337
BceAI ACGGC 1 cut(s) 345
BciT130I CCWGG 2 cut(s) 190, 1030
BfaI CTAG 2 cut(s) 15, 521
BfmI CTRYAG 1 cut(s) 1011
BfuAI ACCTGC 1 cut(s) 988
BisI GCNGC 3 cut(s) 59, 300, 1408
BlnI CCTAGG 1 cut(s) 14
BlsI GCNGC 3 cut(s) 60, 301, 1409
Bme1390I CCNGG 2 cut(s) 190, 1030
Bme18I GGWCC 1 cut(s) 749
BmgT120I GGNCC 1 cut(s) 749
BmiI GGNNCC 4 cut(s) 194, 540, 750, 1027
BmrFI CCNGG 2 cut(s) 190, 1030
BmrI ACTGGG 1 cut(s) 606
BmsI GCATC 1 cut(s) 773
BmuI ACTGGG 1 cut(s) 606
BpiI GAAGAC 1 cut(s) 1428
BplI GAGNNNNNCTC 2 cut(s) 299, 331
BpmI CTGGAG 1 cut(s) 525
Bsa29I ATCGAT 1 cut(s) 562
BsaAI YACGTR 2 cut(s) 271, 1061
BsaJI CCNNGG 4 cut(s) 14, 303, 744, 1029
Bsc4I CCNNNNNNNGG 3 cut(s) 189, 728, 854
Bse118I RCCGGY 1 cut(s) 249
Bse1I ACTGG 1 cut(s) 601
BseBI CCWGG 2 cut(s) 190, 1030
BseCI ATCGAT 1 cut(s) 562
BseDI CCNNGG 4 cut(s) 14, 303, 744, 1029
BseGI GGATG 2 cut(s) 348, 764
BseLI CCNNNNNNNGG 3 cut(s) 189, 728, 854
BseMII CTCAG 4 cut(s) 36, 497, 864, 1320
BseNI ACTGG 1 cut(s) 601
BseRI GAGGAG 2 cut(s) 320, 1031
BseSI GKGCMC 1 cut(s) 715
BseXI GCAGC 1 cut(s) 70
BseYI CCCAGC 1 cut(s) 987
BsgI GTGCAG 1 cut(s) 1016
BshFI GGCC 2 cut(s) 13, 416
BshNI GGYRCC 1 cut(s) 1025
BshVI ATCGAT 1 cut(s) 562
BsiHKAI GWGCWC 2 cut(s) 83, 715
BsiSI CCGG 2 cut(s) 250, 377
BsiWI CGTACG 1 cut(s) 219
BslFI GGGAC 1 cut(s) 876
BslI CCNNNNNNNGG 3 cut(s) 189, 728, 854
BsmFI GGGAC 1 cut(s) 876
BsnI GGCC 2 cut(s) 13, 416
Bsp1286I GDGCHC 3 cut(s) 83, 680, 715
Bsp1407I TGTACA 1 cut(s) 475
Bsp143I GATC 2 cut(s) 1249, 1351
BspACI CCGC 4 cut(s) 20, 300, 774, 1408
BspANI GGCC 2 cut(s) 13, 416
BspCNI CTCAG 4 cut(s) 37, 496, 865, 1321
BspDI ATCGAT 1 cut(s) 562
BspLI GGNNCC 4 cut(s) 194, 540, 750, 1027
BspMAI CTGCAG 1 cut(s) 1015
BspMI ACCTGC 1 cut(s) 988
BspPI GGATC 1 cut(s) 1346
BspT107I GGYRCC 1 cut(s) 1025
BsrFI RCCGGY 1 cut(s) 249
BsrGI TGTACA 1 cut(s) 475
BsrI ACTGG 1 cut(s) 601
BssAI RCCGGY 1 cut(s) 249
BssECI CCNNGG 4 cut(s) 14, 303, 744, 1029
BssMI GATC 2 cut(s) 1249, 1351
BssT1I CCWWGG 2 cut(s) 14, 744
Bst2UI CCWGG 2 cut(s) 190, 1030
Bst4CI ACNGT 3 cut(s) 32, 232, 445
Bst6I CTCTTC 2 cut(s) 1259, 1275
BstAUI TGTACA 1 cut(s) 475
BstBAI YACGTR 2 cut(s) 271, 1061
BstC8I GCNNGC 5 cut(s) 251, 329, 577, 657, 1210
BstDEI CTNAG 5 cut(s) 45, 483, 873, 1329, 1411
BstF5I GGATG 2 cut(s) 348, 764
BstKTI GATC 2 cut(s) 1252, 1354
BstMBI GATC 2 cut(s) 1249, 1351
BstMWI GCNNNNNNNGC 6 cut(s) 55, 129, 259, 585, 665, 801
BstNI CCWGG 2 cut(s) 190, 1030
BstNSI RCATGY 3 cut(s) 247, 583, 898
BstSCI CCNGG 2 cut(s) 188, 1028
BstSFI CTRYAG 1 cut(s) 1011
BstSLI GKGCMC 1 cut(s) 715
BstSNI TACGTA 1 cut(s) 1061
BstV1I GCAGC 1 cut(s) 70
BstV2I GAAGAC 1 cut(s) 1428
Bsu15I ATCGAT 1 cut(s) 562
BsuRI GGCC 2 cut(s) 13, 416
BsuTUI ATCGAT 1 cut(s) 562
BtsCI GGATG 2 cut(s) 348, 764
BtsI GCAGTG 1 cut(s) 722
BtsIMutI CAGTG 2 cut(s) 42, 722
BveI ACCTGC 1 cut(s) 988
Cac8I GCNNGC 5 cut(s) 251, 329, 577, 657, 1210
CaiI CAGNNNCTG 2 cut(s) 490, 974
Cfr10I RCCGGY 1 cut(s) 249
Cfr13I GGNCC 1 cut(s) 749
ClaI ATCGAT 1 cut(s) 562
CseI GACGC 1 cut(s) 129
Csp6I GTAC 2 cut(s) 220, 476
CviAII CATG 6 cut(s) 244, 580, 834, 895, 1247, 1392
CviQI GTAC 2 cut(s) 220, 476
DdeI CTNAG 5 cut(s) 45, 483, 873, 1329, 1411
DpnI GATC 2 cut(s) 1251, 1353
DpnII GATC 2 cut(s) 1249, 1351
DraIII CACNNNGTG 1 cut(s) 728
Eam1104I CTCTTC 2 cut(s) 1259, 1275
EarI CTCTTC 2 cut(s) 1259, 1275
Ecl136II GAGCTC 1 cut(s) 81
Eco105I TACGTA 1 cut(s) 1061
Eco130I CCWWGG 2 cut(s) 14, 744
Eco147I AGGCCT 1 cut(s) 13
Eco24I GRGCYC 2 cut(s) 83, 680
Eco47I GGWCC 1 cut(s) 749
Eco53kI GAGCTC 1 cut(s) 81
Eco57I CTGAAG 3 cut(s) 154, 1191, 1299
Eco72I CACGTG 1 cut(s) 271
EcoICRI GAGCTC 1 cut(s) 81
EcoRII CCWGG 2 cut(s) 188, 1028
EcoT14I CCWWGG 2 cut(s) 14, 744
EcoT38I GRGCYC 2 cut(s) 83, 680
ErhI CCWWGG 2 cut(s) 14, 744
FaeI CATG 6 cut(s) 247, 583, 837, 898, 1250, 1395
FaqI GGGAC 1 cut(s) 876
FatI CATG 6 cut(s) 243, 579, 833, 894, 1246, 1391
FauI CCCGC 1 cut(s) 781
FblI GTMKAC 1 cut(s) 884
Fnu4HI GCNGC 3 cut(s) 59, 300, 1408
FokI GGATG 2 cut(s) 335, 751
FriOI GRGCYC 2 cut(s) 83, 680
Fsp4HI GCNGC 3 cut(s) 59, 300, 1408
FspBI CTAG 2 cut(s) 15, 521
GluI GCNGC 3 cut(s) 59, 300, 1408
GsaI CCCAGC 1 cut(s) 991
GsuI CTGGAG 1 cut(s) 525
HaeIII GGCC 2 cut(s) 13, 416
HapII CCGG 2 cut(s) 250, 377
HgaI GACGC 1 cut(s) 129
Hin1II CATG 6 cut(s) 247, 583, 837, 898, 1250, 1395
HincII GTYRAC 2 cut(s) 617, 885
HindII GTYRAC 2 cut(s) 617, 885
HindIII AAGCTT 1 cut(s) 1210
HinfI GANTC 7 cut(s) 39, 53, 66, 257, 481, 564, 732
HpaII CCGG 2 cut(s) 250, 377
Hpy166II GTNNAC 5 cut(s) 476, 617, 713, 885, 1297
Hpy188I TCNGA 7 cut(s) 71, 111, 286, 486, 1224, 1330, 1356
Hpy188III TCNNGA 5 cut(s) 235, 527, 542, 815, 968
Hpy8I GTNNAC 5 cut(s) 476, 617, 713, 885, 1297
Hpy99I CGWCG 2 cut(s) 236, 286
HpyAV CCTTC 2 cut(s) 464, 1083
HpyCH4III ACNGT 3 cut(s) 32, 232, 445
HpyCH4IV ACGT 4 cut(s) 270, 1060, 1148, 1299
HpyCH4V TGCA 9 cut(s) 327, 579, 713, 898, 953, 997, 1013, 1153, 1208
HpyF10VI GCNNNNNNNGC 6 cut(s) 55, 129, 259, 585, 665, 801
HpyF3I CTNAG 5 cut(s) 45, 483, 873, 1329, 1411
HpySE526I ACGT 4 cut(s) 270, 1060, 1148, 1299
Hsp92II CATG 6 cut(s) 247, 583, 837, 898, 1250, 1395
KroI GCCGGC 1 cut(s) 249
KroNI GCCGGC 1 cut(s) 251
Kzo9I GATC 2 cut(s) 1249, 1351
LmnI GCTCC 4 cut(s) 198, 544, 801, 1018
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 1 cut(s) 773
MaeI CTAG 2 cut(s) 15, 521
MaeII ACGT 4 cut(s) 270, 1060, 1148, 1299
MaeIII GTNAC 3 cut(s) 239, 1165, 1273
MalI GATC 2 cut(s) 1251, 1353
MboI GATC 2 cut(s) 1249, 1351
MfeI CAATTG 1 cut(s) 1318
MhlI GDGCHC 3 cut(s) 83, 680, 715
MlyI GAGTC 1 cut(s) 475
MmeI TCCRAC 2 cut(s) 264, 379
MroNI GCCGGC 1 cut(s) 249
MseI TTAA 6 cut(s) 584, 917, 1103, 1125, 1200, 1215
MspI CCGG 2 cut(s) 250, 377
MspR9I CCNGG 2 cut(s) 190, 1030
MunI CAATTG 1 cut(s) 1318
MvaI CCWGG 2 cut(s) 190, 1030
MwoI GCNNNNNNNGC 6 cut(s) 55, 129, 259, 585, 665, 801
NaeI GCCGGC 1 cut(s) 251
NdeII GATC 2 cut(s) 1249, 1351
NgoMIV GCCGGC 1 cut(s) 249
NlaIII CATG 6 cut(s) 247, 583, 837, 898, 1250, 1395
NlaIV GGNNCC 4 cut(s) 194, 540, 750, 1027
NmeAIII GCCGAG 1 cut(s) 328
NmuCI GTSAC 1 cut(s) 1165
NspI RCATGY 3 cut(s) 247, 583, 898
PceI AGGCCT 1 cut(s) 13
PciI ACATGT 1 cut(s) 243
PcsI WCGNNNNNNNCGW 2 cut(s) 228, 568
PdiI GCCGGC 1 cut(s) 251
PfeI GAWTC 6 cut(s) 39, 53, 66, 257, 564, 732
Pfl23II CGTACG 1 cut(s) 219
PflMI CCANNNNNTGG 2 cut(s) 189, 728
PkrI GCNGC 3 cut(s) 60, 301, 1409
PleI GAGTC 1 cut(s) 475
PmaCI CACGTG 1 cut(s) 271
PmlI CACGTG 1 cut(s) 271
PpsI GAGTC 1 cut(s) 475
Ppu21I YACGTR 2 cut(s) 271, 1061
PscI ACATGT 1 cut(s) 243
PsiI TTATAA 1 cut(s) 1047
Psp124BI GAGCTC 1 cut(s) 83
Psp6I CCWGG 2 cut(s) 188, 1028
PspCI CACGTG 1 cut(s) 271
PspFI CCCAGC 1 cut(s) 987
PspGI CCWGG 2 cut(s) 188, 1028
PspLI CGTACG 1 cut(s) 219
PspN4I GGNNCC 4 cut(s) 194, 540, 750, 1027
PspPI GGNCC 1 cut(s) 749
PstI CTGCAG 1 cut(s) 1015
PstNI CAGNNNCTG 2 cut(s) 490, 974
RsaI GTAC 2 cut(s) 221, 477
RsaNI GTAC 2 cut(s) 220, 476
SacI GAGCTC 1 cut(s) 83
SalI GTCGAC 1 cut(s) 883
SaqAI TTAA 6 cut(s) 584, 917, 1103, 1125, 1200, 1215
SatI GCNGC 3 cut(s) 59, 300, 1408
Sau3AI GATC 2 cut(s) 1249, 1351
Sau96I GGNCC 1 cut(s) 749
SchI GAGTC 1 cut(s) 475
ScrFI CCNGG 2 cut(s) 190, 1030
SduI GDGCHC 3 cut(s) 83, 680, 715
SfaNI GCATC 1 cut(s) 773
SfcI CTRYAG 1 cut(s) 1011
SinI GGWCC 1 cut(s) 749
SnaBI TACGTA 1 cut(s) 1061
SseBI AGGCCT 1 cut(s) 13
SsiI CCGC 4 cut(s) 20, 300, 774, 1408
SspI AATATT 1 cut(s) 1006
SspMI CTAG 2 cut(s) 15, 521
SstI GAGCTC 1 cut(s) 83
StuI AGGCCT 1 cut(s) 13
StyD4I CCNGG 2 cut(s) 188, 1028
StyI CCWWGG 2 cut(s) 14, 744
TaaI ACNGT 3 cut(s) 32, 232, 445
TaiI ACGT 4 cut(s) 273, 1063, 1151, 1302
TaqI TCGA 6 cut(s) 90, 226, 455, 562, 571, 884
TatI WGTACW 1 cut(s) 475
TauI GCSGC 2 cut(s) 302, 1410
TfiI GAWTC 6 cut(s) 39, 53, 66, 257, 564, 732
Tru1I TTAA 6 cut(s) 584, 917, 1103, 1125, 1200, 1215
Tru9I TTAA 6 cut(s) 584, 917, 1103, 1125, 1200, 1215
TscAI CASTG 2 cut(s) 49, 729
TseFI GTSAC 1 cut(s) 1165
TseI GCWGC 1 cut(s) 58
Tsp45I GTSAC 1 cut(s) 1165
TspDTI ATGAA 3 cut(s) 108, 154, 1068
TspGWI ACGGA 2 cut(s) 185, 1176
TspRI CASTG 2 cut(s) 49, 729
Van91I CCANNNNNTGG 2 cut(s) 189, 728
VneI GTGCAC 1 cut(s) 711
VpaK11BI GGWCC 1 cut(s) 749
XapI RAATTY 3 cut(s) 85, 628, 1265
XceI RCATGY 3 cut(s) 247, 583, 898
XcmI CCANNNNNNNNNTGG 1 cut(s) 751
XmaJI CCTAGG 1 cut(s) 14
XmiI GTMKAC 1 cut(s) 884
XspI CTAG 2 cut(s) 15, 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.