Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0005018

Physical Location & Seq

Genomic Coordinates Reverse (-)

21061047 .. 21062050

Gene Structure 1004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g20560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGAGGACAATCATTGAGTTCAGTATGACAGGCAGTTTGAATGAAGTCCCTACTCATCTTTTGTTGGAAATATTAGTTTTTGCAAATAAATTTTGTTGCGAAAAGCTTAAAGATGCTTGCGACCGGAAACTTGCATCCTTTGTGTCTTCTAGAGAGGATGCGGTAGAACTCATGGCATATGCTCTTGAAGAGAACTGTCCTGTCCTTGCTGCATCATGTTTACAAGATGCTGATAGACAACAGAGATCGATCATGGTTGGTCAAGCCTCGTTTTCGCTATACTGTTTATTAAGTGAAGTTTGTATGAACCTTGATCCGCAGTTGGATAAAACAGCTTGTTTCCTGGAACGATTGGTAGAGTTTTCTGAAAATGATAGACAAAGAATGCTGGCATTCCATCAGTTGGGATGCCTGAGGCTCTTGAGAAAAGAGTATGACGAAGCTAAGCGCCTTTTTGAAGAAGCTTTAAATGCAGGCCATATACATTCAGTAGCAGGATTAGCTAGACTGAGTTACATTAAGGGCCATAAACTTTGGTCATGTGAAAAGCTTAGCTCTGTAATCTGCACTGTTACGCCGCTTGGATGGATGTATCAGGAGAGGTCCTTGTACTGTGAAGGTGATAAGAGATGGGAAGACCTTGAGAGAGCATCTGAGCTGGATCCAACTCTTACTTACCCTTACATGTATCGTGCGGCTACATTAATGAGAAACCAGAATATTCAAGCTGCACTTGCAGAAATTAATTGGGTTCTGGGGTTTAAACTTGCTTTAGAATGCTTGGAACTCCGGTTTTGTTTCTATCTTGCTCTTGAGGACTATAAATCAGCCATTTGTGATGTTCAAGCAATTCTGATTCTCTCCCCAGATGATAGAATGTTTGAGGGACGGGTGGCAACATCCAGTGGTGGATCTAGGATTTCAAGATCAGGGGTTCCAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006521 GO:0008150 GO:0009889 GO:0010364 GO:0010565 GO:0010817 GO:0019222 GO:0031323 GO:0031326 GO:0031335 GO:0032350 GO:0033238 GO:0042762 GO:0046885 GO:0050789 GO:0050794 GO:0051171 GO:0062012 GO:0065007 GO:0065008 GO:0080090 GO:1900908 GO:1900911

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB TPR_7 TPR_8

Protein Analysis

315

Amino Acids

35.76

Weight (kDa)

5.44

Isoelectric Point (pI)

60.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02680
fragaria_vesca	FvH4_2g23020 FvH4_2g23020 FvH4_2g23020 FvH4_2g23020 FvH4_2g23020 FvH4_2g23020 FvH4_2g23020
malus_domestica	MD03G1258600.v1.1 MD11G1279200.v1.1
prunus_persica	Prupe.8G235100_v2.0.a1 Prupe.8G235100_v2.0.a1 Prupe.8G235100_v2.0.a1 Prupe.8G235100_v2.0.a1 Prupe.8G235100_v2.0.a1
pyrus_communis	pycom03g20480 pycom03g20560
rosa_chinensis	RchiOBHm_Chr6g0290061
rosa_laevigata	RLG00000012249
rosa_multiflora	Rmu_sc0002902.1_g000038
rosa_roxburghii	Rroxscaffold_7G00177380
rosa_rugosa	Rorug06G0209200 Rorug06G0209300 Rorug06G0209400 Rorug06G0209500
rosa_samantha	Rh6AG320100 Rh6BG327300 Rh6CG333000 Rh6DG318900
rosa_wichuraiana	Rw6G027620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	403
AciI	CCGC	4 cut(s)	161, 317, 578, 695
AclWI	GGATC	4 cut(s)	308, 656, 669, 919
AcsI	RAATTY	1 cut(s)	89
AfaI	GTAC	1 cut(s)	611
AfiI	CCNNNNNNNGG	1 cut(s)	403
AflIII	ACRYGT	1 cut(s)	684
AgsI	TTSAA	6 cut(s)	40, 188, 458, 725, 845, 924
AjnI	CCWGG	1 cut(s)	342
AluBI	AGCT	9 cut(s)	106, 335, 443, 464, 503, 550, 555, 658, 728
AluI	AGCT	9 cut(s)	106, 335, 443, 464, 503, 550, 555, 658, 728
AlwI	GGATC	4 cut(s)	308, 656, 669, 919
AoxI	GGCC	2 cut(s)	475, 523
ApeKI	GCWGC	2 cut(s)	209, 728
ApoI	RAATTY	1 cut(s)	89
ArsI	GACNNNNNNTTYG	2 cut(s)	19, 51
AseI	ATTAAT	2 cut(s)	704, 744
AspLEI	GCGC	1 cut(s)	450
AspS9I	GGNCC	2 cut(s)	523, 603
AsuHPI	GGTGA	1 cut(s)	632
AvaII	GGWCC	1 cut(s)	603
AxyI	CCTNAGG	1 cut(s)	413
BamHI	GGATCC	1 cut(s)	661
BbsI	GAAGAC	2 cut(s)	138, 642
BbvI	GCAGC	2 cut(s)	196, 715
BccI	CCATC	3 cut(s)	405, 579, 624
BciT130I	CCWGG	1 cut(s)	344
BfaI	CTAG	3 cut(s)	150, 504, 915
BfoI	RGCGCY	1 cut(s)	451
BisI	GCNGC	4 cut(s)	210, 578, 696, 729
BlpI	GCTNAGC	2 cut(s)	444, 551
BlsI	GCNGC	4 cut(s)	211, 579, 697, 730
Bme1390I	CCNGG	1 cut(s)	344
Bme18I	GGWCC	1 cut(s)	603
BmgT120I	GGNCC	2 cut(s)	523, 603
BmiI	GGNNCC	2 cut(s)	663, 936
BmrFI	CCNGG	1 cut(s)	344
BmsI	GCATC	7 cut(s)	103, 143, 148, 217, 221, 398, 659
BpiI	GAAGAC	2 cut(s)	138, 642
Bpu1102I	GCTNAGC	2 cut(s)	444, 551
BpuEI	CTTGAG	3 cut(s)	442, 662, 833
Bsa29I	ATCGAT	1 cut(s)	248
BsaWI	WCCGGW	2 cut(s)	123, 789
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse1I	ACTGG	1 cut(s)	903
Bse21I	CCTNAGG	1 cut(s)	413
BseBI	CCWGG	1 cut(s)	344
BseCI	ATCGAT	1 cut(s)	248
BseGI	GGATG	6 cut(s)	134, 163, 413, 590, 594, 899
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMII	CTCAG	3 cut(s)	404, 500, 645
BseNI	ACTGG	1 cut(s)	903
BseXI	GCAGC	2 cut(s)	196, 715
BsgI	GTGCAG	2 cut(s)	550, 714
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	2 cut(s)	477, 525
BshVI	ATCGAT	1 cut(s)	248
BsiEI	CGRYCG	1 cut(s)	124
BsiSI	CCGG	2 cut(s)	124, 790
BslFI	GGGAC	2 cut(s)	32, 900
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmFI	GGGAC	2 cut(s)	32, 900
BsmI	GAATGC	3 cut(s)	390, 392, 782
BsnI	GGCC	2 cut(s)	477, 525
Bsp143I	GATC	6 cut(s)	245, 249, 313, 661, 911, 926
Bsp1720I	GCTNAGC	2 cut(s)	444, 551
BspACI	CCGC	4 cut(s)	161, 317, 578, 695
BspANI	GGCC	2 cut(s)	477, 525
BspCNI	CTCAG	3 cut(s)	405, 501, 646
BspDI	ATCGAT	1 cut(s)	248
BspLI	GGNNCC	2 cut(s)	663, 936
BspPI	GGATC	4 cut(s)	308, 656, 669, 919
BsrI	ACTGG	1 cut(s)	903
BssMI	GATC	6 cut(s)	245, 249, 313, 661, 911, 926
Bst2UI	CCWGG	1 cut(s)	344
Bst4CI	ACNGT	4 cut(s)	197, 284, 571, 614
Bst6I	CTCTTC	1 cut(s)	183
BstC8I	GCNNGC	3 cut(s)	118, 390, 475
BstDEI	CTNAG	5 cut(s)	413, 444, 509, 551, 654
BstF5I	GGATG	6 cut(s)	134, 163, 413, 590, 594, 899
BstH2I	RGCGCY	1 cut(s)	451
BstHHI	GCGC	1 cut(s)	450
BstKTI	GATC	6 cut(s)	248, 252, 316, 664, 914, 929
BstMBI	GATC	6 cut(s)	245, 249, 313, 661, 911, 926
BstMCI	CGRYCG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	3 cut(s)	470, 500, 734
BstNI	CCWGG	1 cut(s)	344
BstNSI	RCATGY	1 cut(s)	688
BstSCI	CCNGG	1 cut(s)	342
BstV1I	GCAGC	2 cut(s)	196, 715
BstV2I	GAAGAC	2 cut(s)	138, 642
BstX2I	RGATCY	2 cut(s)	661, 911
BstYI	RGATCY	2 cut(s)	661, 911
Bsu15I	ATCGAT	1 cut(s)	248
Bsu36I	CCTNAGG	1 cut(s)	413
BsuRI	GGCC	2 cut(s)	477, 525
BsuTUI	ATCGAT	1 cut(s)	248
BtsCI	GGATG	6 cut(s)	134, 163, 413, 590, 594, 899
BtsIMutI	CAGTG	2 cut(s)	567, 910
Cac8I	GCNNGC	3 cut(s)	118, 390, 475
CfoI	GCGC	1 cut(s)	450
Cfr13I	GGNCC	2 cut(s)	523, 603
ClaI	ATCGAT	1 cut(s)	248
Csp6I	GTAC	1 cut(s)	610
CviAII	CATG	5 cut(s)	172, 216, 253, 540, 685
CviQI	GTAC	1 cut(s)	610
DdeI	CTNAG	5 cut(s)	413, 444, 509, 551, 654
DpnI	GATC	6 cut(s)	247, 251, 315, 663, 913, 928
DpnII	GATC	6 cut(s)	245, 249, 313, 661, 911, 926
DraI	TTTAAA	2 cut(s)	468, 763
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
Eco47I	GGWCC	1 cut(s)	603
Eco81I	CCTNAGG	1 cut(s)	413
EcoO109I	RGGNCCY	1 cut(s)	603
EcoRII	CCWGG	1 cut(s)	342
FaeI	CATG	5 cut(s)	175, 219, 256, 543, 688
FalI	AAGNNNNNCTT	2 cut(s)	717, 749
FaqI	GGGAC	2 cut(s)	32, 900
FatI	CATG	5 cut(s)	171, 215, 252, 539, 684
FauNDI	CATATG	1 cut(s)	178
Fnu4HI	GCNGC	4 cut(s)	210, 578, 696, 729
FokI	GGATG	6 cut(s)	121, 170, 420, 597, 601, 886
Fsp4HI	GCNGC	4 cut(s)	210, 578, 696, 729
FspBI	CTAG	3 cut(s)	150, 504, 915
GlaI	GCGC	1 cut(s)	449
GluI	GCNGC	4 cut(s)	210, 578, 696, 729
HaeII	RGCGCY	1 cut(s)	451
HaeIII	GGCC	2 cut(s)	477, 525
HapII	CCGG	2 cut(s)	124, 790
HhaI	GCGC	1 cut(s)	450
Hin1II	CATG	5 cut(s)	175, 219, 256, 543, 688
Hin6I	GCGC	1 cut(s)	448
HinP1I	GCGC	1 cut(s)	448
HindIII	AAGCTT	3 cut(s)	104, 462, 548
HinfI	GANTC	1 cut(s)	856
HpaII	CCGG	2 cut(s)	124, 790
HphI	GGTGA	1 cut(s)	632
Hpy166II	GTNNAC	1 cut(s)	221
Hpy188I	TCNGA	3 cut(s)	367, 655, 855
Hpy188III	TCNNGA	6 cut(s)	150, 185, 421, 596, 812, 924
Hpy8I	GTNNAC	1 cut(s)	221
HpyAV	CCTTC	1 cut(s)	611
HpyCH4III	ACNGT	4 cut(s)	197, 284, 571, 614
HpyCH4V	TGCA	7 cut(s)	83, 134, 212, 473, 567, 731, 737
HpyF10VI	GCNNNNNNNGC	3 cut(s)	470, 500, 734
HpyF3I	CTNAG	5 cut(s)	413, 444, 509, 551, 654
Hsp92II	CATG	5 cut(s)	175, 219, 256, 543, 688
HspAI	GCGC	1 cut(s)	448
Kzo9I	GATC	6 cut(s)	245, 249, 313, 661, 911, 926
Lsp1109I	GCAGC	2 cut(s)	196, 715
LweI	GCATC	7 cut(s)	103, 143, 148, 217, 221, 398, 659
MaeI	CTAG	3 cut(s)	150, 504, 915
MaeIII	GTNAC	2 cut(s)	512, 571
MalI	GATC	6 cut(s)	247, 251, 315, 663, 913, 928
MboI	GATC	6 cut(s)	245, 249, 313, 661, 911, 926
MboII	GAAGA	4 cut(s)	138, 200, 470, 647
MflI	RGATCY	2 cut(s)	661, 911
MluCI	AATT	4 cut(s)	89, 741, 745, 849
MmeI	TCCRAC	3 cut(s)	45, 303, 689
MnlI	CCTC	6 cut(s)	148, 277, 408, 594, 808, 877
MseI	TTAA	7 cut(s)	108, 290, 467, 519, 704, 744, 762
MspI	CCGG	2 cut(s)	124, 790
MspR9I	CCNGG	1 cut(s)	344
MssI	GTTTAAAC	1 cut(s)	763
Mva1269I	GAATGC	3 cut(s)	390, 392, 782
MvaI	CCWGG	1 cut(s)	344
MwoI	GCNNNNNNNGC	3 cut(s)	470, 500, 734
NdeI	CATATG	1 cut(s)	178
NdeII	GATC	6 cut(s)	245, 249, 313, 661, 911, 926
NlaIII	CATG	5 cut(s)	175, 219, 256, 543, 688
NlaIV	GGNNCC	2 cut(s)	663, 936
NspI	RCATGY	1 cut(s)	688
PciI	ACATGT	1 cut(s)	684
PctI	GAATGC	3 cut(s)	390, 392, 782
PfeI	GAWTC	1 cut(s)	856
PflMI	CCANNNNNTGG	1 cut(s)	403
PfoI	TCCNGGA	1 cut(s)	342
PkrI	GCNGC	4 cut(s)	211, 579, 697, 730
PmeI	GTTTAAAC	1 cut(s)	763
PpuMI	RGGWCCY	1 cut(s)	603
PscI	ACATGT	1 cut(s)	684
PshBI	ATTAAT	2 cut(s)	704, 744
Psp5II	RGGWCCY	1 cut(s)	603
Psp6I	CCWGG	1 cut(s)	342
PspGI	CCWGG	1 cut(s)	342
PspN4I	GGNNCC	2 cut(s)	663, 936
PspPI	GGNCC	2 cut(s)	523, 603
PspPPI	RGGWCCY	1 cut(s)	603
PsuI	RGATCY	2 cut(s)	661, 911
RsaI	GTAC	1 cut(s)	611
RsaNI	GTAC	1 cut(s)	610
SaqAI	TTAA	7 cut(s)	108, 290, 467, 519, 704, 744, 762
SatI	GCNGC	4 cut(s)	210, 578, 696, 729
Sau3AI	GATC	6 cut(s)	245, 249, 313, 661, 911, 926
Sau96I	GGNCC	2 cut(s)	523, 603
ScrFI	CCNGG	1 cut(s)	344
SfaNI	GCATC	7 cut(s)	103, 143, 148, 217, 221, 398, 659
SinI	GGWCC	1 cut(s)	603
SmlI	CTYRAG	3 cut(s)	421, 641, 812
SmoI	CTYRAG	3 cut(s)	421, 641, 812
Sse9I	AATT	4 cut(s)	89, 741, 745, 849
SsiI	CCGC	4 cut(s)	161, 317, 578, 695
SspI	AATATT	2 cut(s)	72, 721
SspMI	CTAG	3 cut(s)	150, 504, 915
StyD4I	CCNGG	1 cut(s)	342
TaaI	ACNGT	4 cut(s)	197, 284, 571, 614
TaqI	TCGA	1 cut(s)	248
TasI	AATT	4 cut(s)	89, 741, 745, 849
TatI	WGTACW	1 cut(s)	609
TauI	GCSGC	2 cut(s)	580, 698
TfiI	GAWTC	1 cut(s)	856
Tru1I	TTAA	7 cut(s)	108, 290, 467, 519, 704, 744, 762
Tru9I	TTAA	7 cut(s)	108, 290, 467, 519, 704, 744, 762
TscAI	CASTG	2 cut(s)	574, 910
TseI	GCWGC	2 cut(s)	209, 728
TspDTI	ATGAA	2 cut(s)	57, 320
TspRI	CASTG	2 cut(s)	574, 910
Van91I	CCANNNNNTGG	1 cut(s)	403
VpaK11BI	GGWCC	1 cut(s)	603
VspI	ATTAAT	2 cut(s)	704, 744
XapI	RAATTY	1 cut(s)	89
XbaI	TCTAGA	1 cut(s)	149
XceI	RCATGY	1 cut(s)	688
XspI	CTAG	3 cut(s)	150, 504, 915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.