Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005018

Physical Location & Seq

Genomic Coordinates Forward (+)

33327386 .. 33328683

Gene Structure 1298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0209200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGAAACAAAAAATAAAGCATTCACAGTTGATAATGTCAGGCAGAAATTGGGTTTTTCTAATGGCTTCAGGGTGGATCCAGAAGGGCTTCTTGGCTTATCTGGAGGGTTAGCTGTTTGGTGGACTGATAAATTGGTAGTGGATGTTCTTGATAGTGCTAAGAATTTTATCGATACAAGAATTACTGATACAGAGGCTAACCTTGTTAGTCGTGTTACCTTTATCTACGGTCCTCCGCAAGATGGGAAGAAAGCTTTCTGGAATAAGTTATGCTCTATTGCTCGTTTAATATTTGAGCCTTGGCTTTGTATTGGGGATTTTAATGAGCTTTTAAGCAATGATGAGGTTCTAGGGGGGGCTCCTAGAAGTGAGGCAAGAATGAAGATGTTCAGGGACTTTATTTTCAAGGCAAGGCTTCTTGATCTGGGATTTCAAGGGTCTGCTTTCACATGGTTCAGGAAAAAGATAGATGGCTCCTTATTGCAAGAACGATTGGATAGAGCTTTGGTTAATGGTACATGGTGTGATACTTGGCCTCAGACTGAAATTTTCAATTATCCCAATGTGGGTTCTGATCACTCGCCAGTTCTTGTGTCTTGCTCTCCTATGGATTCTAAAGCTCCTAAACTTTTCAAATTTGAGGAACGTTGGAAACGTGATCCTAAGTGTTTTGAAGTGGTGAATCAAAATTGGAAGCAAACTGTTAGTGGCAGCTCTCAATTTCAATGGAAAAAGAAACTTAGTTACTGTAAGGTGGGTTTGAAGAGCTGGAGCAGCAAGTGTTTTGGGAATTCTAAGAAAAAAATTGATTCTCTAATGGGGGAGCTGAATCATCTTTCTAGTCATGGTTCTTATGAAGTGCATAAAGAGAGGATGGAGGCAATAGTTCTGAATCTTGATGAGCTTTGGACACGGGAAGAATCGTTTTGGCATCAAAAATCCAGAGTGAATTGGCTTCGAACTGGTGACAAAGCTGTGAATGACGGTTTCACCAAGTACTTGAAGGAGTTATTTTCATCGGAGGGTGAACGAAACTGGGATGAAGCACTAAATTCCATTAGTCCAGTTGTGTCATCTGAAATGAATGACAATCTTTTGAGGCAAGTTACGATTGACGAGGTCAGGGATGCAGTTTTTCAAATTGGTCCTCTGAAGGCACCTGGCCCGGATGGGTTGCTTTCTCTCCTTCACGGGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006521 GO:0008150 GO:0009889 GO:0010364 GO:0010565 GO:0010817 GO:0019222 GO:0031323 GO:0031326 GO:0031335 GO:0032350 GO:0033238 GO:0042762 GO:0046885 GO:0050789 GO:0050794 GO:0051171 GO:0062012 GO:0065007 GO:0065008 GO:0080090 GO:1900908 GO:1900911

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB TPR_7 TPR_8

Protein Analysis

399

Amino Acids

45.53

Weight (kDa)

8.05

Isoelectric Point (pI)

28.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02680
fragaria_vesca	FvH4_2g23020 FvH4_2g23020 FvH4_2g23020 FvH4_2g23020 FvH4_2g23020 FvH4_2g23020 FvH4_2g23020
malus_domestica	MD03G1258600.v1.1 MD11G1279200.v1.1
prunus_persica	Prupe.8G235100_v2.0.a1 Prupe.8G235100_v2.0.a1 Prupe.8G235100_v2.0.a1 Prupe.8G235100_v2.0.a1 Prupe.8G235100_v2.0.a1
pyrus_communis	pycom03g20480 pycom03g20560
rosa_chinensis	RchiOBHm_Chr6g0290061
rosa_laevigata	RLG00000012249
rosa_multiflora	Rmu_sc0002902.1_g000038
rosa_roxburghii	Rroxscaffold_7G00177380
rosa_rugosa	Rorug06G0209200 Rorug06G0209300 Rorug06G0209400 Rorug06G0209500
rosa_samantha	Rh6AG320100 Rh6BG327300 Rh6CG333000 Rh6DG318900
rosa_wichuraiana	Rw6G027620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1156
AciI	CCGC	1 cut(s)	236
AclI	AACGTT	1 cut(s)	646
AclWI	GGATC	3 cut(s)	71, 84, 653
AcsI	RAATTY	5 cut(s)	163, 546, 635, 790, 1051
AcuI	CTGAAG	2 cut(s)	52, 1172
AfaI	GTAC	2 cut(s)	517, 998
AfiI	CCNNNNNNNGG	3 cut(s)	242, 566, 1192
AgsI	TTSAA	9 cut(s)	406, 434, 553, 634, 674, 725, 763, 1003, 1139
AjnI	CCWGG	1 cut(s)	1159
AjuI	GAANNNNNNNTTGG	2 cut(s)	75, 107
AlwI	GGATC	3 cut(s)	71, 84, 653
AoxI	GGCC	2 cut(s)	533, 1162
ApeKI	GCWGC	2 cut(s)	711, 774
ApoI	RAATTY	5 cut(s)	163, 546, 635, 790, 1051
Asp700I	GAANNNNTTC	3 cut(s)	87, 254, 386
AspS9I	GGNCC	3 cut(s)	230, 1145, 1163
AsuC2I	CCSGG	1 cut(s)	1166
AsuHPI	GGTGA	4 cut(s)	691, 977, 982, 1037
AsuII	TTCGAA	1 cut(s)	958
AvaII	GGWCC	2 cut(s)	230, 1145
BamHI	GGATCC	1 cut(s)	76
BanI	GGYRCC	1 cut(s)	1156
BanII	GRGCYC	1 cut(s)	361
BbvI	GCAGC	2 cut(s)	723, 786
BccI	CCATC	4 cut(s)	236, 464, 868, 1163
BciT130I	CCWGG	1 cut(s)	1161
BclI	TGATCA	1 cut(s)	574
BcnI	CCSGG	1 cut(s)	1166
BfaI	CTAG	3 cut(s)	350, 363, 840
BisI	GCNGC	2 cut(s)	712, 775
BlsI	GCNGC	2 cut(s)	713, 776
BmcAI	AGTACT	1 cut(s)	998
Bme1390I	CCNGG	2 cut(s)	1161, 1166
Bme18I	GGWCC	2 cut(s)	230, 1145
BmgT120I	GGNCC	3 cut(s)	230, 1145, 1163
BmiI	GGNNCC	4 cut(s)	78, 360, 475, 1158
BmrFI	CCNGG	2 cut(s)	1161, 1166
BmrI	ACTGGG	1 cut(s)	1045
BmsI	GCATC	2 cut(s)	940, 1117
BmuI	ACTGGG	1 cut(s)	1045
BpmI	CTGGAG	2 cut(s)	123, 790
Bpu14I	TTCGAA	1 cut(s)	958
BpuMI	CCSGG	1 cut(s)	1166
Bsa29I	ATCGAT	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	3 cut(s)	242, 566, 1192
Bse1I	ACTGG	4 cut(s)	584, 967, 1040, 1064
Bse3DI	GCAATG	1 cut(s)	343
BseBI	CCWGG	1 cut(s)	1161
BseCI	ATCGAT	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	299
BseGI	GGATG	5 cut(s)	148, 879, 1045, 1132, 1174
BseLI	CCNNNNNNNGG	3 cut(s)	242, 566, 1192
BseMI	GCAATG	1 cut(s)	343
BseMII	CTCAG	1 cut(s)	551
BseNI	ACTGG	4 cut(s)	584, 967, 1040, 1064
BseXI	GCAGC	2 cut(s)	723, 786
BshFI	GGCC	2 cut(s)	535, 1164
BshNI	GGYRCC	1 cut(s)	1156
BshVI	ATCGAT	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	1166
BslFI	GGGAC	1 cut(s)	407
BslI	CCNNNNNNNGG	3 cut(s)	242, 566, 1192
BsmFI	GGGAC	1 cut(s)	407
BsmI	GAATGC	1 cut(s)	20
BsnI	GGCC	2 cut(s)	535, 1164
Bsp119I	TTCGAA	1 cut(s)	958
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp143I	GATC	4 cut(s)	76, 421, 574, 658
BspACI	CCGC	1 cut(s)	236
BspANI	GGCC	2 cut(s)	535, 1164
BspCNI	CTCAG	1 cut(s)	550
BspDI	ATCGAT	1 cut(s)	171
BspLI	GGNNCC	4 cut(s)	78, 360, 475, 1158
BspPI	GGATC	3 cut(s)	71, 84, 653
BspQI	GCTCTTC	1 cut(s)	758
BspT104I	TTCGAA	1 cut(s)	958
BspT107I	GGYRCC	1 cut(s)	1156
BsrDI	GCAATG	1 cut(s)	343
BsrI	ACTGG	4 cut(s)	584, 967, 1040, 1064
BssECI	CCNNGG	1 cut(s)	299
BssMI	GATC	4 cut(s)	76, 421, 574, 658
BssT1I	CCWWGG	1 cut(s)	299
Bst2UI	CCWGG	1 cut(s)	1161
Bst4CI	ACNGT	5 cut(s)	28, 230, 703, 749, 986
Bst6I	CTCTTC	1 cut(s)	758
BstBI	TTCGAA	1 cut(s)	958
BstDEI	CTNAG	5 cut(s)	159, 537, 663, 740, 795
BstF5I	GGATG	5 cut(s)	148, 879, 1045, 1132, 1174
BstKTI	GATC	4 cut(s)	79, 424, 577, 661
BstMBI	GATC	4 cut(s)	76, 421, 574, 658
BstMWI	GCNNNNNNNGC	1 cut(s)	774
BstNI	CCWGG	1 cut(s)	1161
BstSCI	CCNGG	2 cut(s)	1159, 1164
BstV1I	GCAGC	2 cut(s)	723, 786
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
Bsu15I	ATCGAT	1 cut(s)	171
BsuRI	GGCC	2 cut(s)	535, 1164
BsuTUI	ATCGAT	1 cut(s)	171
BtsCI	GGATG	5 cut(s)	148, 879, 1045, 1132, 1174
Cfr13I	GGNCC	3 cut(s)	230, 1145, 1163
ClaI	ATCGAT	1 cut(s)	171
Csp6I	GTAC	2 cut(s)	516, 997
CviAII	CATG	3 cut(s)	450, 519, 845
CviQI	GTAC	2 cut(s)	516, 997
DdeI	CTNAG	5 cut(s)	159, 537, 663, 740, 795
DpnI	GATC	4 cut(s)	78, 423, 576, 660
DpnII	GATC	4 cut(s)	76, 421, 574, 658
Eam1104I	CTCTTC	1 cut(s)	758
EarI	CTCTTC	1 cut(s)	758
Eco130I	CCWWGG	1 cut(s)	299
Eco24I	GRGCYC	1 cut(s)	361
Eco47I	GGWCC	2 cut(s)	230, 1145
Eco57I	CTGAAG	2 cut(s)	52, 1172
EcoRI	GAATTC	1 cut(s)	790
EcoRII	CCWGG	1 cut(s)	1159
EcoT14I	CCWWGG	1 cut(s)	299
EcoT38I	GRGCYC	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	299
FaeI	CATG	3 cut(s)	453, 522, 848
FaiI	YATR	7 cut(s)	271, 451, 520, 608, 846, 855, 864
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FaqI	GGGAC	1 cut(s)	407
FatI	CATG	3 cut(s)	449, 518, 844
FbaI	TGATCA	1 cut(s)	574
Fnu4HI	GCNGC	2 cut(s)	712, 775
FokI	GGATG	5 cut(s)	155, 886, 1052, 1139, 1181
FriOI	GRGCYC	1 cut(s)	361
Fsp4HI	GCNGC	2 cut(s)	712, 775
FspBI	CTAG	3 cut(s)	350, 363, 840
GluI	GCNGC	2 cut(s)	712, 775
GsuI	CTGGAG	2 cut(s)	123, 790
HaeIII	GGCC	2 cut(s)	535, 1164
HapII	CCGG	1 cut(s)	1166
Hin1II	CATG	3 cut(s)	453, 522, 848
HindIII	AAGCTT	1 cut(s)	252
HinfI	GANTC	6 cut(s)	611, 682, 809, 829, 892, 920
HpaII	CCGG	1 cut(s)	1166
HphI	GGTGA	4 cut(s)	691, 977, 982, 1037
Hpy166II	GTNNAC	2 cut(s)	123, 1028
Hpy188I	TCNGA	6 cut(s)	540, 574, 891, 1021, 1078, 1152
Hpy188III	TCNNGA	8 cut(s)	80, 102, 149, 259, 419, 457, 896, 942
Hpy8I	GTNNAC	2 cut(s)	123, 1028
HpyAV	CCTTC	4 cut(s)	77, 997, 1147, 1196
HpyCH4III	ACNGT	5 cut(s)	28, 230, 703, 749, 986
HpyCH4IV	ACGT	2 cut(s)	646, 655
HpyCH4V	TGCA	3 cut(s)	484, 862, 1130
HpyF10VI	GCNNNNNNNGC	1 cut(s)	774
HpyF3I	CTNAG	5 cut(s)	159, 537, 663, 740, 795
HpySE526I	ACGT	2 cut(s)	646, 655
Hsp92II	CATG	3 cut(s)	453, 522, 848
Ksp22I	TGATCA	1 cut(s)	574
Kzo9I	GATC	4 cut(s)	76, 421, 574, 658
LguI	GCTCTTC	1 cut(s)	758
LmnI	GCTCC	5 cut(s)	364, 479, 625, 771, 823
Lsp1109I	GCAGC	2 cut(s)	723, 786
LweI	GCATC	2 cut(s)	940, 1117
MaeI	CTAG	3 cut(s)	350, 363, 840
MaeII	ACGT	2 cut(s)	646, 655
MaeIII	GTNAC	4 cut(s)	214, 743, 965, 1105
MalI	GATC	4 cut(s)	78, 423, 576, 660
MboI	GATC	4 cut(s)	76, 421, 574, 658
MboII	GAAGA	4 cut(s)	259, 394, 775, 929
MflI	RGATCY	1 cut(s)	76
MhlI	GDGCHC	1 cut(s)	361
MmeI	TCCRAC	1 cut(s)	629
MroXI	GAANNNNTTC	3 cut(s)	87, 254, 386
MseI	TTAA	4 cut(s)	287, 321, 332, 510
MspI	CCGG	1 cut(s)	1166
MspR9I	CCNGG	2 cut(s)	1161, 1166
Mva1269I	GAATGC	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	1161
MwoI	GCNNNNNNNGC	1 cut(s)	774
NciI	CCSGG	1 cut(s)	1166
NdeII	GATC	4 cut(s)	76, 421, 574, 658
NlaIII	CATG	3 cut(s)	453, 522, 848
NlaIV	GGNNCC	4 cut(s)	78, 360, 475, 1158
NmuCI	GTSAC	1 cut(s)	965
NspV	TTCGAA	1 cut(s)	958
PciSI	GCTCTTC	1 cut(s)	758
PcsI	WCGNNNNNNNCGW	1 cut(s)	652
PctI	GAATGC	1 cut(s)	20
PdmI	GAANNNNTTC	3 cut(s)	87, 254, 386
PfeI	GAWTC	6 cut(s)	611, 682, 809, 829, 892, 920
PflFI	GACNNNGTC	1 cut(s)	1118
PkrI	GCNGC	2 cut(s)	713, 776
Psp1406I	AACGTT	1 cut(s)	646
Psp6I	CCWGG	1 cut(s)	1159
PspGI	CCWGG	1 cut(s)	1159
PspN4I	GGNNCC	4 cut(s)	78, 360, 475, 1158
PspPI	GGNCC	3 cut(s)	230, 1145, 1163
PsrI	GAACNNNNNNTAC	2 cut(s)	129, 161
PsuI	RGATCY	1 cut(s)	76
PsyI	GACNNNGTC	1 cut(s)	1118
RsaI	GTAC	2 cut(s)	517, 998
RsaNI	GTAC	2 cut(s)	516, 997
SapI	GCTCTTC	1 cut(s)	758
SaqAI	TTAA	4 cut(s)	287, 321, 332, 510
SatI	GCNGC	2 cut(s)	712, 775
Sau3AI	GATC	4 cut(s)	76, 421, 574, 658
Sau96I	GGNCC	3 cut(s)	230, 1145, 1163
ScaI	AGTACT	1 cut(s)	998
ScrFI	CCNGG	2 cut(s)	1161, 1166
SduI	GDGCHC	1 cut(s)	361
SfaNI	GCATC	2 cut(s)	940, 1117
SfuI	TTCGAA	1 cut(s)	958
SinI	GGWCC	2 cut(s)	230, 1145
SsiI	CCGC	1 cut(s)	236
SspI	AATATT	1 cut(s)	291
SspMI	CTAG	3 cut(s)	350, 363, 840
StyD4I	CCNGG	2 cut(s)	1159, 1164
StyI	CCWWGG	1 cut(s)	299
TaaI	ACNGT	5 cut(s)	28, 230, 703, 749, 986
TaiI	ACGT	2 cut(s)	649, 658
TaqI	TCGA	2 cut(s)	171, 958
TatI	WGTACW	1 cut(s)	996
TfiI	GAWTC	6 cut(s)	611, 682, 809, 829, 892, 920
Tru1I	TTAA	4 cut(s)	287, 321, 332, 510
Tru9I	TTAA	4 cut(s)	287, 321, 332, 510
TseFI	GTSAC	1 cut(s)	965
TseI	GCWGC	2 cut(s)	711, 774
Tsp45I	GTSAC	1 cut(s)	965
TspDTI	ATGAA	5 cut(s)	395, 870, 1005, 1056, 1097
Tth111I	GACNNNGTC	1 cut(s)	1118
VpaK11BI	GGWCC	2 cut(s)	230, 1145
XapI	RAATTY	5 cut(s)	163, 546, 635, 790, 1051
XmnI	GAANNNNTTC	3 cut(s)	87, 254, 386
XspI	CTAG	3 cut(s)	350, 363, 840
ZrmI	AGTACT	1 cut(s)	998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.