Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005018

Physical Location & Seq

Genomic Coordinates Forward (+)

16889178 .. 16893484

Gene Structure 4307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00177380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2697 bp

ATGAGGACCTTCTTTCCCTCCGAGTCTTGTAAAGAGTCGCAGCTCAATGCTCTCAATCCACAATCTTGGCTCCAAGTCGAAAGAGGGAAGCTTTCCAAACTTTCATCAAACTCAAACTCAAACTCCTCCTCCTCCTCCTCCTTCCGTTCATATTCTTCCATAGAATCTCTTATAAAGGTGCCCGAGCCGCCTATACTCCCATTCTATAAGCCAGTTGATTATGTGGAGGTTTTAGCTCAAATTCATGAAGAACTTGAGTTGTGTCCTCCACAGGAGCAGTCAAATCTTTATTTGTTACAATTCCAGGTCTTTAGGGGCCTTGGAGAAGTCAAGCTGATGCGGAGAAGCCTCCGTGCAGCTTGGCAGAAAGCCAACAGTGTTCATGAGAAGCTCGTCTTTGCAGCATGGTTGAAGTATGAGAAGCAAGGGGAAGATCATATTTCTGACTTGCTTTCCTCTTGTGGAAAATGTGCACAGGAGTTTGGGCCAGTAGATATTTTAGCTCAGTTTCCTGTTGATGGTGAGACTAGTACCCATGAGACTATCTCAATGGGTGGGAACAAGATGTCAAGAAATGTCAGTTTTAAAATCGAGGATGAGAAAATAGTCTGTGATAGGCAGAAAATATCCAGCCTTTCGGCTCCATTTGATGCCATGCTTAATGGGTGCTTCTCAGAATCACTTAGCGAGGACATAGATTTGTCAAAAAACAATATCTCTGCATCCGGTATGAAGGAAATCAATGAGTTCAGTAAAACAGGCAGTTTGGGTGAAGTCCCTCCACATCTTTTGTTGGAAATATTAGCTTTTGCTAATAAATTTTGTTGTGAAAAGCTCAAAGATGCTTGTGACAGGAAACTTGCTTCCTTGGTGTCTTCTAGAGATGATGCAGTCGAACTCATGGAGTATGCACTTGAAGAGAACTGTCGTGTCCTTGCTGCATCATGTTTACAAGTTTTCTTGGAAGATCTTCCTAATTGTTTGAATGACGACCGGGTGGTGGAGCTGTTCAAGCATGCTGATAGAGAGCAAAGATTGATCATGATTGGACCAGGCTCATTTTCACTGTACTGTTTATTAAGTGAAGTTGCTATGAACATTGATCCTCAGTCAGATAAAACAGCTTGTTTTCTGGAACGCTTGGTAGAGTTTTCTGAAAATGATAGGCAAAGACTGCTGGCATCTCATCAGTTGGGATGTCTGAGGCTCTTGAGAAAAGAGTATGCTGAAGCGAAGCGTCTCTTTGAGGAAGCTTTAACTGCAGGCCATATTTATTCAGTTGCAGGTTTAGCTAGACTGGATTACATCAAAGGCCATAAAGTTTGGTCATATGAAAAGCTGAGCTCAGTGATCAACTCTGTTATTCCGCTTGGATGGATGTACCAGGAGAGGTCATTATACCGTGAAGATGATAAGAAATGGGAAGACCTTGAGAAAGCATCTGAATTGGACCCAACTCTTACTTATCCATACATGTATCGGGCAGCTACACTAATGAGAAAAAACAACACTCAAGCTGCACTTGCAGAAATTAATCGGGTTCTTGGGTTTAAACTTGCATTGGATTGCTTGGAGCTCCGTTTTTGTTTCTACCTCACTCTGGAGGATTATAAATCAGCCATTTGTGACGTTCAAGCAATTCTTACTCTCTGCCCAGATTATAGGATGTTGGAGGGACGGGTTGCAGCATCCCAACTTCGTACGCTTGTCCGTGAGCATGTTGAAAATTGGACAACAGCAGATTGTTGGTTGCAACTGTATGATAGGTGGTCTTCAGTTGATGATATTGGGTCCCTCTCTGTTATTTACCAGATGCTTGAATCTGATGAGGCAAAAGGTGTTCTCTATTTCAGGCAGTCTTTGCTCCTCCTCAGGTTGAACTGTCCTGAAGCTGCGATGCGGAGTTTACAATTAGCTCGTCAACATGCTTCCAGTGAACATGAAAAGTTGGTGTATGAGGGATGGATCTTATACGACACAGGCCACTGTGAGGAAGGGCTCCGTAAAGCTGAAGAATCTATCAAAATTGAAAGAACCTTTGAGGCCTTTTTCTTGAAAGCATATGCACTGGCAGACTCTAGCCAAGATCCGTCCTGTTCCTCAACTGTTGTTTCTCTCCTAGAAGACGCCTTGAAGTGCCGCTCAGACAGGTTGCGGAAAGGCCAGGCGCTAAATAACCTTGGAAGTGTTTATGTTGACTGTATGAAGTTAGAGTTGGCAGCTGATTGCTACATTAATGCTCTTAAGATCAGGCATACCCGAGCCCACCAGGGCCTTGCTAGGGTTCATTTTCTCAAAAACGACAAGGCCGGTGCCTATGAAGAAATGACCAAACTGATTGAGAAAGCCCGGAATAATGCATCTGCCTATGAGAAAAGATCTGAATACTGTGATCGTGAACTCACAAAGACAGATCTGGAGATGGTCACCCGATTAGATCCACTTCGGGTATACCCTTACAGATATAGAGCTGCAGTGTTGATGGATAGCCACAAAGAAAAAGAGGCAATTGCAGAACTATCAAAGGCAATTGCATTCAAAGCTGATCTCCATCTTTTGCACTTGAGGGCTGCATTCCATGAGCACACTGGGAATGTCATGGGTGCACTGCGAGACTGTCGAGCTGCTCTTTCTGTCGACCCAAACCATCAAGAGATGCTGGAGCTTCACAGCCGTGTTAACAGCCATGAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006521 GO:0008150 GO:0009889 GO:0010364 GO:0010565 GO:0010817 GO:0019222 GO:0031323 GO:0031326 GO:0031335 GO:0032350 GO:0033238 GO:0042762 GO:0046885 GO:0050789 GO:0050794 GO:0051171 GO:0062012 GO:0065007 GO:0065008 GO:0080090 GO:1900908 GO:1900911

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB TPR_7 TPR_8

Protein Analysis

898

Amino Acids

102.23

Weight (kDa)

5.7

Isoelectric Point (pI)

47.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02680
fragaria_vesca	FvH4_2g23020 FvH4_2g23020 FvH4_2g23020 FvH4_2g23020 FvH4_2g23020 FvH4_2g23020 FvH4_2g23020
malus_domestica	MD03G1258600.v1.1 MD11G1279200.v1.1
prunus_persica	Prupe.8G235100_v2.0.a1 Prupe.8G235100_v2.0.a1 Prupe.8G235100_v2.0.a1 Prupe.8G235100_v2.0.a1 Prupe.8G235100_v2.0.a1
pyrus_communis	pycom03g20480 pycom03g20560
rosa_chinensis	RchiOBHm_Chr6g0290061
rosa_laevigata	RLG00000012249
rosa_multiflora	Rmu_sc0002902.1_g000038
rosa_roxburghii	Rroxscaffold_7G00177380
rosa_rugosa	Rorug06G0209200 Rorug06G0209300 Rorug06G0209400 Rorug06G0209500
rosa_samantha	Rh6AG320100 Rh6BG327300 Rh6CG333000 Rh6DG318900
rosa_wichuraiana	Rw6G027620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	173, 1611
Acc36I	ACCTGC	1 cut(s)	1274
AccB1I	GGYRCC	2 cut(s)	178, 2312
AccBSI	CCGCTC	1 cut(s)	2142
AccI	GTMKAC	2 cut(s)	2451, 2637
AciI	CCGC	6 cut(s)	188, 340, 1367, 1900, 2140, 2155
AclWI	GGATC	4 cut(s)	1097, 1973, 2081, 2432
AcsI	RAATTY	2 cut(s)	240, 818
AcuI	CTGAAG	4 cut(s)	1248, 1758, 1908, 2031
AcyI	GRCGYC	1 cut(s)	2127
AfaI	GTAC	4 cut(s)	532, 1070, 1382, 1702
AfiI	CCNNNNNNNGG	5 cut(s)	518, 1000, 1600, 1990, 2281
AflII	CTTAAG	1 cut(s)	2243
AflIII	ACRYGT	1 cut(s)	1473
AhlI	ACTAGT	1 cut(s)	527
AjnI	CCWGG	5 cut(s)	303, 1051, 1383, 2163, 2268
AjuI	GAANNNNNNNTTGG	2 cut(s)	2198, 2230
AleI	CACNNNNGTG	1 cut(s)	2673
Alw21I	GWGCWC	5 cut(s)	475, 1346, 1578, 2586, 2608
Alw26I	GTCTC	4 cut(s)	518, 533, 1244, 2607
Alw44I	GTGCAC	2 cut(s)	471, 2604
AlwI	GGATC	4 cut(s)	1097, 1973, 2081, 2432
Ama87I	CYCGRG	2 cut(s)	182, 2259
AoxI	GGCC	9 cut(s)	316, 485, 1264, 1312, 1981, 2043, 2161, 2272, 2307
ApaLI	GTGCAC	2 cut(s)	471, 2604
ApoI	RAATTY	2 cut(s)	240, 818
AseI	ATTAAT	2 cut(s)	1533, 2235
Asp700I	GAANNNNTTC	1 cut(s)	969
AspLEI	GCGC	1 cut(s)	2170
AspS9I	GGNCC	7 cut(s)	6, 316, 485, 1049, 1450, 1791, 2272
AsuC2I	CCSGG	2 cut(s)	995, 2350
AsuHPI	GGTGA	3 cut(s)	533, 782, 2419
AvaI	CYCGRG	2 cut(s)	182, 2259
AvaII	GGWCC	4 cut(s)	6, 1049, 1450, 1791
AxyI	CCTNAGG	1 cut(s)	1871
BaeGI	GKGCMC	3 cut(s)	183, 475, 2608
BanI	GGYRCC	2 cut(s)	178, 2312
BanII	GRGCYC	4 cut(s)	1346, 1578, 2001, 2266
BbsI	GAAGAC	4 cut(s)	867, 1431, 1764, 2130
Bbv12I	GWGCWC	5 cut(s)	475, 1346, 1578, 2586, 2608
BccI	CCATC	7 cut(s)	512, 1368, 1956, 2416, 2476, 2559, 2655
BceAI	ACGGC	1 cut(s)	2658
BciT130I	CCWGG	5 cut(s)	305, 1053, 1385, 2165, 2270
BclI	TGATCA	2 cut(s)	1038, 1350
BcnI	CCSGG	2 cut(s)	995, 2350
BcoDI	GTCTC	4 cut(s)	518, 533, 1244, 2607
BcuI	ACTAGT	1 cut(s)	527
BfaI	CTAG	6 cut(s)	528, 879, 1293, 2079, 2120, 2280
BfmI	CTRYAG	2 cut(s)	1260, 2472
BfoI	RGCGCY	1 cut(s)	2171
BfrI	CTTAAG	1 cut(s)	2243
BfuAI	ACCTGC	1 cut(s)	1274
BglII	AGATCT	3 cut(s)	967, 2378, 2413
BlpI	GCTNAGC	1 cut(s)	1340
Bme1390I	CCNGG	7 cut(s)	305, 995, 1053, 1385, 2165, 2270, 2350
Bme18I	GGWCC	4 cut(s)	6, 1049, 1450, 1791
BmeT110I	CYCGRG	2 cut(s)	182, 2259
BmgT120I	GGNCC	7 cut(s)	6, 316, 485, 1049, 1450, 1791, 2272
BmiI	GGNNCC	9 cut(s)	71, 180, 317, 642, 1452, 1792, 1793, 2000, 2314
BmrFI	CCNGG	7 cut(s)	305, 995, 1053, 1385, 2165, 2270, 2350
BmrI	ACTGGG	1 cut(s)	2598
BmuI	ACTGGG	1 cut(s)	2598
BpiI	GAAGAC	4 cut(s)	867, 1431, 1764, 2130
BplI	GAGNNNNNCTC	2 cut(s)	530, 562
BpmI	CTGGAG	3 cut(s)	1622, 2438, 2681
Bpu1102I	GCTNAGC	1 cut(s)	1340
BpuEI	CTTGAG	5 cut(s)	275, 1231, 1451, 1497, 2584
BpuMI	CCSGG	2 cut(s)	995, 2350
BsaBI	GATNNNNATC	1 cut(s)	2550
BsaHI	GRCGYC	1 cut(s)	2127
BsaJI	CCNNGG	4 cut(s)	319, 867, 2179, 2269
BsaWI	WCCGGW	1 cut(s)	725
BsaXI	ACNNNNNCTCC	4 cut(s)	107, 113, 137, 143
Bsc4I	CCNNNNNNNGG	5 cut(s)	518, 1000, 1600, 1990, 2281
Bse118I	RCCGGY	1 cut(s)	2309
Bse1I	ACTGG	6 cut(s)	212, 488, 1302, 1932, 2073, 2593
Bse21I	CCTNAGG	1 cut(s)	1871
Bse8I	GATNNNNATC	1 cut(s)	2550
BseBI	CCWGG	5 cut(s)	305, 1053, 1385, 2165, 2270
BseDI	CCNNGG	4 cut(s)	319, 867, 2179, 2269
BseGI	GGATG	8 cut(s)	601, 722, 1202, 1379, 1383, 1671, 1688, 1967
BseJI	GATNNNNATC	1 cut(s)	2550
BseLI	CCNNNNNNNGG	5 cut(s)	518, 1000, 1600, 1990, 2281
BseMII	CTCAG	8 cut(s)	518, 687, 1121, 1193, 1331, 1359, 1885, 2157
BseNI	ACTGG	6 cut(s)	212, 488, 1302, 1932, 2073, 2593
BseRI	GAGGAG	7 cut(s)	115, 118, 121, 124, 127, 1856, 1859
BseSI	GKGCMC	3 cut(s)	183, 475, 2608
BsgI	GTGCAG	2 cut(s)	375, 1503
Bsh1285I	CGRYCG	1 cut(s)	994
BshFI	GGCC	9 cut(s)	318, 487, 1266, 1314, 1983, 2045, 2163, 2274, 2309
BshNI	GGYRCC	2 cut(s)	178, 2312
BsiEI	CGRYCG	1 cut(s)	994
BsiHKAI	GWGCWC	5 cut(s)	475, 1346, 1578, 2586, 2608
BsiHKCI	CYCGRG	2 cut(s)	182, 2259
BsiSI	CCGG	4 cut(s)	726, 994, 2310, 2350
BsiWI	CGTACG	1 cut(s)	1700
BslFI	GGGAC	3 cut(s)	761, 1689, 1777
BslI	CCNNNNNNNGG	5 cut(s)	518, 1000, 1600, 1990, 2281
BsmAI	GTCTC	4 cut(s)	518, 533, 1244, 2607
BsmBI	CGTCTC	1 cut(s)	1244
BsmFI	GGGAC	3 cut(s)	761, 1689, 1777
BsmI	GAATGC	2 cut(s)	2534, 2573
BsnI	GGCC	9 cut(s)	318, 487, 1266, 1314, 1983, 2045, 2163, 2274, 2309
BsoBI	CYCGRG	2 cut(s)	182, 2259
Bsp1286I	GDGCHC	8 cut(s)	183, 475, 1346, 1578, 2001, 2266, 2586, 2608
Bsp1720I	GCTNAGC	1 cut(s)	1340
BspACI	CCGC	6 cut(s)	188, 340, 1367, 1900, 2140, 2155
BspANI	GGCC	9 cut(s)	318, 487, 1266, 1314, 1983, 2045, 2163, 2274, 2309
BspCNI	CTCAG	8 cut(s)	517, 686, 1120, 1194, 1332, 1358, 1884, 2156
BspHI	TCATGA	3 cut(s)	244, 382, 1041
BspLI	GGNNCC	9 cut(s)	71, 180, 317, 642, 1452, 1792, 1793, 2000, 2314
BspMAI	CTGCAG	2 cut(s)	1264, 2476
BspMI	ACCTGC	1 cut(s)	1274
BspPI	GGATC	4 cut(s)	1097, 1973, 2081, 2432
BspT107I	GGYRCC	2 cut(s)	178, 2312
BspTI	CTTAAG	1 cut(s)	2243
BsrBI	CCGCTC	1 cut(s)	2142
BsrFI	RCCGGY	1 cut(s)	2309
BsrI	ACTGG	6 cut(s)	212, 488, 1302, 1932, 2073, 2593
BssAI	RCCGGY	1 cut(s)	2309
BssECI	CCNNGG	4 cut(s)	319, 867, 2179, 2269
BssNAI	GTATAC	1 cut(s)	2452
BssNI	GRCGYC	1 cut(s)	2127
BssT1I	CCWWGG	3 cut(s)	319, 867, 2179
Bst1107I	GTATAC	1 cut(s)	2452
Bst2UI	CCWGG	5 cut(s)	305, 1053, 1385, 2165, 2270
Bst6I	CTCTTC	1 cut(s)	912
BstACI	GRCGYC	1 cut(s)	2127
BstAFI	CTTAAG	1 cut(s)	2243
BstAPI	GCANNNNNTGC	2 cut(s)	1174, 1861
BstC8I	GCNNGC	3 cut(s)	1017, 1179, 1264
BstDEI	CTNAG	9 cut(s)	504, 673, 683, 1107, 1202, 1340, 1345, 1871, 2143
BstEII	GGTNACC	1 cut(s)	2425
BstF5I	GGATG	8 cut(s)	601, 722, 1202, 1379, 1383, 1671, 1688, 1967
BstH2I	RGCGCY	1 cut(s)	2171
BstHHI	GCGC	1 cut(s)	2170
BstMAI	GTCTC	4 cut(s)	518, 533, 1244, 2607
BstMCI	CGRYCG	1 cut(s)	994
BstMWI	GCNNNNNNNGC	8 cut(s)	187, 1012, 1174, 1259, 1289, 1523, 1861, 2540
BstNI	CCWGG	5 cut(s)	305, 1053, 1385, 2165, 2270
BstNSI	RCATGY	4 cut(s)	1019, 1477, 1721, 1928
BstPI	GGTNACC	1 cut(s)	2425
BstSCI	CCNGG	7 cut(s)	303, 993, 1051, 1383, 2163, 2268, 2348
BstSFI	CTRYAG	2 cut(s)	1260, 2472
BstSLI	GKGCMC	3 cut(s)	183, 475, 2608
BstV2I	GAAGAC	4 cut(s)	867, 1431, 1764, 2130
BstX2I	RGATCY	6 cut(s)	967, 1965, 2086, 2378, 2413, 2437
BstXI	CCANNNNNNTGG	1 cut(s)	66
BstYI	RGATCY	6 cut(s)	967, 1965, 2086, 2378, 2413, 2437
BstZ17I	GTATAC	1 cut(s)	2452
Bsu36I	CCTNAGG	1 cut(s)	1871
BsuRI	GGCC	9 cut(s)	318, 487, 1266, 1314, 1983, 2045, 2163, 2274, 2309
BtgZI	GCGATG	1 cut(s)	1910
BtsCI	GGATG	8 cut(s)	601, 722, 1202, 1379, 1383, 1671, 1688, 1967
BtsI	GCAGTG	2 cut(s)	2481, 2606
BtsIMutI	CAGTG	9 cut(s)	382, 1064, 1353, 1939, 1984, 2066, 2481, 2586, 2606
BveI	ACCTGC	1 cut(s)	1274
Cac8I	GCNNGC	3 cut(s)	1017, 1179, 1264
CciI	TCATGA	3 cut(s)	244, 382, 1041
CfoI	GCGC	1 cut(s)	2170
Cfr10I	RCCGGY	1 cut(s)	2309
Cfr13I	GGNCC	7 cut(s)	6, 316, 485, 1049, 1450, 1791, 2272
CseI	GACGC	2 cut(s)	1226, 2135
Csp6I	GTAC	4 cut(s)	531, 1069, 1381, 1701
CspCI	CAANNNNNGTGG	2 cut(s)	771, 806
CviQI	GTAC	4 cut(s)	531, 1069, 1381, 1701
DdeI	CTNAG	9 cut(s)	504, 673, 683, 1107, 1202, 1340, 1345, 1871, 2143
DraI	TTTAAA	2 cut(s)	586, 1552
Eam1104I	CTCTTC	1 cut(s)	912
EarI	CTCTTC	1 cut(s)	912
Ecl136II	GAGCTC	2 cut(s)	1344, 1576
Eco130I	CCWWGG	3 cut(s)	319, 867, 2179
Eco147I	AGGCCT	1 cut(s)	2045
Eco24I	GRGCYC	4 cut(s)	1346, 1578, 2001, 2266
Eco47I	GGWCC	4 cut(s)	6, 1049, 1450, 1791
Eco53kI	GAGCTC	2 cut(s)	1344, 1576
Eco57I	CTGAAG	4 cut(s)	1248, 1758, 1908, 2031
Eco81I	CCTNAGG	1 cut(s)	1871
Eco88I	CYCGRG	2 cut(s)	182, 2259
Eco91I	GGTNACC	1 cut(s)	2425
EcoICRI	GAGCTC	2 cut(s)	1344, 1576
EcoO109I	RGGNCCY	4 cut(s)	6, 316, 1791, 2272
EcoO65I	GGTNACC	1 cut(s)	2425
EcoRII	CCWGG	5 cut(s)	303, 1051, 1383, 2163, 2268
EcoT14I	CCWWGG	3 cut(s)	319, 867, 2179
EcoT22I	ATGCAT	1 cut(s)	2362
EcoT38I	GRGCYC	4 cut(s)	1346, 1578, 2001, 2266
ErhI	CCWWGG	3 cut(s)	319, 867, 2179
Esp3I	CGTCTC	1 cut(s)	1244
FalI	AAGNNNNNCTT	8 cut(s)	380, 412, 1226, 1258, 1506, 1538, 1626, 1658
FaqI	GGGAC	3 cut(s)	761, 1689, 1777
FauNDI	CATATG	2 cut(s)	1330, 2062
FbaI	TGATCA	2 cut(s)	1038, 1350
FblI	GTMKAC	2 cut(s)	2451, 2637
FokI	GGATG	8 cut(s)	608, 709, 1209, 1386, 1390, 1675, 1678, 1974
FriOI	GRGCYC	4 cut(s)	1346, 1578, 2001, 2266
FspBI	CTAG	6 cut(s)	528, 879, 1293, 2079, 2120, 2280
GlaI	GCGC	1 cut(s)	2169
GsuI	CTGGAG	3 cut(s)	1622, 2438, 2681
HaeII	RGCGCY	1 cut(s)	2171
HaeIII	GGCC	9 cut(s)	318, 487, 1266, 1314, 1983, 2045, 2163, 2274, 2309
HapII	CCGG	4 cut(s)	726, 994, 2310, 2350
HgaI	GACGC	2 cut(s)	1226, 2135
HhaI	GCGC	1 cut(s)	2170
Hin1I	GRCGYC	1 cut(s)	2127
Hin6I	GCGC	1 cut(s)	2168
HinP1I	GCGC	1 cut(s)	2168
HincII	GTYRAC	4 cut(s)	1922, 2197, 2638, 2680
HindII	GTYRAC	4 cut(s)	1922, 2197, 2638, 2680
HindIII	AAGCTT	2 cut(s)	89, 1251
HinfI	GANTC	7 cut(s)	23, 35, 164, 677, 1820, 2015, 2075
HpaI	GTTAAC	1 cut(s)	2680
HpaII	CCGG	4 cut(s)	726, 994, 2310, 2350
HphI	GGTGA	3 cut(s)	533, 782, 2419
HpyAV	CCTTC	4 cut(s)	19, 151, 727, 1988
HpyCH4IV	ACGT	1 cut(s)	1629
HpyF10VI	GCNNNNNNNGC	8 cut(s)	187, 1012, 1174, 1259, 1289, 1523, 1861, 2540
HpyF3I	CTNAG	9 cut(s)	504, 673, 683, 1107, 1202, 1340, 1345, 1871, 2143
HpySE526I	ACGT	1 cut(s)	1629
Hsp92I	GRCGYC	1 cut(s)	2127
HspAI	GCGC	1 cut(s)	2168
KflI	GGGWCCC	1 cut(s)	1791
Ksp22I	TGATCA	2 cut(s)	1038, 1350
KspAI	GTTAAC	1 cut(s)	2680
LmnI	GCTCC	9 cut(s)	75, 274, 646, 1003, 1573, 1581, 1869, 2004, 2662
MaeI	CTAG	6 cut(s)	528, 879, 1293, 2079, 2120, 2280
MaeII	ACGT	1 cut(s)	1629
MaeIII	GTNAC	4 cut(s)	294, 848, 1625, 2425
MbiI	CCGCTC	1 cut(s)	2142
MfeI	CAATTG	2 cut(s)	2508, 2529
MflI	RGATCY	6 cut(s)	967, 1965, 2086, 2378, 2413, 2437
MhlI	GDGCHC	8 cut(s)	183, 475, 1346, 1578, 2001, 2266, 2586, 2608
MlyI	GAGTC	3 cut(s)	32, 44, 2069
MmeI	TCCRAC	2 cut(s)	774, 1650
Mph1103I	ATGCAT	1 cut(s)	2362
MroXI	GAANNNNTTC	1 cut(s)	969
MseI	TTAA	9 cut(s)	585, 660, 1079, 1256, 1533, 1551, 2235, 2244, 2679
MslI	CAYNNNNRTG	1 cut(s)	2673
MspA1I	CMGCKG	1 cut(s)	2222
MspCI	CTTAAG	1 cut(s)	2243
MspI	CCGG	4 cut(s)	726, 994, 2310, 2350
MspR9I	CCNGG	7 cut(s)	305, 995, 1053, 1385, 2165, 2270, 2350
MssI	GTTTAAAC	1 cut(s)	1552
MunI	CAATTG	2 cut(s)	2508, 2529
Mva1269I	GAATGC	2 cut(s)	2534, 2573
MvaI	CCWGG	5 cut(s)	305, 1053, 1385, 2165, 2270
MwoI	GCNNNNNNNGC	8 cut(s)	187, 1012, 1174, 1259, 1289, 1523, 1861, 2540
NciI	CCSGG	2 cut(s)	995, 2350
NdeI	CATATG	2 cut(s)	1330, 2062
NlaIV	GGNNCC	9 cut(s)	71, 180, 317, 642, 1452, 1792, 1793, 2000, 2314
NmuCI	GTSAC	3 cut(s)	848, 1625, 2425
NsiI	ATGCAT	1 cut(s)	2362
NspI	RCATGY	4 cut(s)	1019, 1477, 1721, 1928
OliI	CACNNNNGTG	1 cut(s)	2673
PaeI	GCATGC	1 cut(s)	1019
PagI	TCATGA	3 cut(s)	244, 382, 1041
PceI	AGGCCT	1 cut(s)	2045
PciI	ACATGT	1 cut(s)	1473
PctI	GAATGC	2 cut(s)	2534, 2573
PdmI	GAANNNNTTC	1 cut(s)	969
PfeI	GAWTC	4 cut(s)	164, 677, 1820, 2015
Pfl23II	CGTACG	1 cut(s)	1700
PleI	GAGTC	3 cut(s)	31, 43, 2069
PmeI	GTTTAAAC	1 cut(s)	1552
PpsI	GAGTC	3 cut(s)	31, 43, 2069
PpuMI	RGGWCCY	2 cut(s)	6, 1791
PscI	ACATGT	1 cut(s)	1473
PshBI	ATTAAT	2 cut(s)	1533, 2235
PsiI	TTATAA	2 cut(s)	173, 1611
Psp124BI	GAGCTC	2 cut(s)	1346, 1578
Psp5II	RGGWCCY	2 cut(s)	6, 1791
Psp6I	CCWGG	5 cut(s)	303, 1051, 1383, 2163, 2268
PspEI	GGTNACC	1 cut(s)	2425
PspGI	CCWGG	5 cut(s)	303, 1051, 1383, 2163, 2268
PspLI	CGTACG	1 cut(s)	1700
PspN4I	GGNNCC	9 cut(s)	71, 180, 317, 642, 1452, 1792, 1793, 2000, 2314
PspPI	GGNCC	7 cut(s)	6, 316, 485, 1049, 1450, 1791, 2272
PspPPI	RGGWCCY	2 cut(s)	6, 1791
PstI	CTGCAG	2 cut(s)	1264, 2476
PsuI	RGATCY	6 cut(s)	967, 1965, 2086, 2378, 2413, 2437
PvuII	CAGCTG	1 cut(s)	2222
RsaI	GTAC	4 cut(s)	532, 1070, 1382, 1702
RsaNI	GTAC	4 cut(s)	531, 1069, 1381, 1701
RseI	CAYNNNNRTG	1 cut(s)	2673
SacI	GAGCTC	2 cut(s)	1346, 1578
SalI	GTCGAC	1 cut(s)	2636
SaqAI	TTAA	9 cut(s)	585, 660, 1079, 1256, 1533, 1551, 2235, 2244, 2679
Sau96I	GGNCC	7 cut(s)	6, 316, 485, 1049, 1450, 1791, 2272
SchI	GAGTC	3 cut(s)	32, 44, 2069
ScrFI	CCNGG	7 cut(s)	305, 995, 1053, 1385, 2165, 2270, 2350
SduI	GDGCHC	8 cut(s)	183, 475, 1346, 1578, 2001, 2266, 2586, 2608
SfcI	CTRYAG	2 cut(s)	1260, 2472
SinI	GGWCC	4 cut(s)	6, 1049, 1450, 1791
SmiMI	CAYNNNNRTG	1 cut(s)	2673
SmlI	CTYRAG	6 cut(s)	254, 1210, 1430, 1512, 2243, 2563
SmoI	CTYRAG	6 cut(s)	254, 1210, 1430, 1512, 2243, 2563
SpeI	ACTAGT	1 cut(s)	527
SphI	GCATGC	1 cut(s)	1019
SseBI	AGGCCT	1 cut(s)	2045
SsiI	CCGC	6 cut(s)	188, 340, 1367, 1900, 2140, 2155
SspI	AATATT	1 cut(s)	801
SspMI	CTAG	6 cut(s)	528, 879, 1293, 2079, 2120, 2280
SstI	GAGCTC	2 cut(s)	1346, 1578
StuI	AGGCCT	1 cut(s)	2045
StyD4I	CCNGG	7 cut(s)	303, 993, 1051, 1383, 2163, 2268, 2348
StyI	CCWWGG	3 cut(s)	319, 867, 2179
TaiI	ACGT	1 cut(s)	1632
TaqI	TCGA	5 cut(s)	78, 591, 894, 2620, 2637
TatI	WGTACW	1 cut(s)	1068
TauI	GCSGC	2 cut(s)	190, 2142
TfiI	GAWTC	4 cut(s)	164, 677, 1820, 2015
Tru1I	TTAA	9 cut(s)	585, 660, 1079, 1256, 1533, 1551, 2235, 2244, 2679
Tru9I	TTAA	9 cut(s)	585, 660, 1079, 1256, 1533, 1551, 2235, 2244, 2679
TscAI	CASTG	9 cut(s)	382, 1071, 1353, 1939, 1991, 2073, 2481, 2593, 2613
TseFI	GTSAC	3 cut(s)	848, 1625, 2425
Tsp45I	GTSAC	3 cut(s)	848, 1625, 2425
TspGWI	ACGGA	6 cut(s)	134, 341, 1568, 1700, 1991, 2079
TspRI	CASTG	9 cut(s)	382, 1071, 1353, 1939, 1991, 2073, 2481, 2593, 2613
Vha464I	CTTAAG	1 cut(s)	2243
VneI	GTGCAC	2 cut(s)	471, 2604
VpaK11BI	GGWCC	4 cut(s)	6, 1049, 1450, 1791
VspI	ATTAAT	2 cut(s)	1533, 2235
XapI	RAATTY	2 cut(s)	240, 818
XbaI	TCTAGA	1 cut(s)	878
XceI	RCATGY	4 cut(s)	1019, 1477, 1721, 1928
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2585
XmiI	GTMKAC	2 cut(s)	2451, 2637
XmnI	GAANNNNTTC	1 cut(s)	969
XspI	CTAG	6 cut(s)	528, 879, 1293, 2079, 2120, 2280
Zsp2I	ATGCAT	1 cut(s)	2362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.