pycom04g03720

CRM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0015258
Physical Location & Seq
Forward (+)
3322224 .. 3326895
4672 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1287 bp
ATGGCAAGAGCTGTGTTTTCTGCTGCTGTTCGCAGAGCTTCTTCGGTTCTCAAATCTTCGCCTTCCAAACCTCACTCTCTAAGGTCAGGTTTTCCAACCCAAGAACCAATTTTCATTGCAACCATACACTTGCCTCTGCCAAATCCTCTAAACGCATCATGGGTTTTCAGAAACTTGAGCCATGGGTCGGTGAATTTGGTGATATCACAAGGGAAACCCAAGTTCGAGATGCACGAAATCGATCCACCAAAAAAGGAGAAGTGGCTGACCAAGAAGAGGTTAAAGCAACAGAGAATGAGAGAGAAGCAGGAGAGAAGAGCGGCCAATAGGAAGGATCCACGTCAGCTCGGCATCAAGAGGAAGAAGAAAGGGCAGAAGTTTGCTAATGCTGAGGAGAGAATCAAGTACAAGCTTGAAAAGGCTAGAATAAAGGAAGCTTTGCTGATTGAAAGACTTAAGAGGTATGAAATTCCAAAAGTCCAGGGTCCTGAGGTACAACCAGATGACCTGACAGGTGAGGAGCGGTTTTATATGAAGAAAATGGCTCAAAAGAAGTCTAATTATGCACCGATTGGAAAACGAGGAATTTTCGGAGGTGTTATTCTTAACATGCATATGCATTGGAAAAAACATGAAACCGTCAAGGTGATTTGCAAGCCATGTAAACCTGGCCAAGTACATGAATATGCCCAGGAAATTGCTAGACTGAGTGGCGGGATCCCAATTCAAATAGTTGGAGATGACACCATAATATTCTATCGAGGAAAGAACTATGTCATGCCAAAAGTTATGTCACCCACAAATACTTTGTCCAAGAAAAAGGCACTGGAAAAGTTTAAGTACGAGCAATCCCTCGAGACCGTGCGGCACTTCATTGCCGTTGCTGAGAAGGAACTGGAGCTGTATTACAGACATATTGCACTTTATGGTGACCCAAATGACAGGAATCCCATTTCAATCTTGGATAGTCCAACACAAGAGATCAAGGAATCAGGGGAACTTAAAATGCTTGAAAAGCAAAATGTAGATTCCACCAATGATTTCTTTTCCGCGAGTCTTTCAGAGATAAACGCAGGTTCCTCAATCTCAGAGCTATCAGAAAGTGAGGATTCTGAAGATGACAAATTCTCAATAAACGAATCAGATTCTGAAGATGATAACTTATCGATAAACAAATCAGATTCTGAAGATGACAGCATATTTGATTCCGCCAATGAAACAATCTCTTCGAAGAGGAAAAACAGCACGTCACCATTGGATGTTAGGTACGAGAGAACGGAACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRS1_YhbY

Protein Analysis

429

Amino Acids

48.98

Weight (kDa)

9.38

Isoelectric Point (pI)

54.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRS1_YhbY PF01985 170 - 254 5.6e-19 CRS1 / YhbY (CRM) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28480
fragaria_vesca FvH4_4g10890
malus_domestica MD04G1042300.v1.1
prunus_persica Prupe.1G196500_v2.0.a1
pyrus_communis pycom04g03720 pycom13g28110
rosa_chinensis RchiOBHm_Chr4g0406531
rosa_laevigata RLG00000008767
rosa_multiflora Rmu_ssc0000186.1_g000035
rosa_roxburghii Rroxscaffold_5G00351420
rosa_rugosa Rorug04G0072100
rosa_samantha Rh4AG139100 Rh4BG136200 Rh4CG146400 Rh4DG133500
rosa_wichuraiana Rw4G011350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1064
AccBSI CCGCTC 2 cut(s) 320, 523
AccII CGCG 1 cut(s) 1052
AciI CCGC 6 cut(s) 320, 523, 714, 865, 1050, 1209
AclWI GGATC 5 cut(s) 236, 329, 342, 712, 725
AcoI YGGCCR 2 cut(s) 321, 670
AcsI RAATTY 4 cut(s) 193, 468, 585, 1124
AcuI CTGAAG 3 cut(s) 1134, 1170, 1206
AfaI GTAC 5 cut(s) 407, 495, 678, 842, 1268
AfiI CCNNNNNNNGG 2 cut(s) 187, 276
AflII CTTAAG 1 cut(s) 455
AgsI TTSAA 5 cut(s) 416, 449, 728, 957, 1013
AjiI CACGTC 2 cut(s) 341, 1248
AjnI CCWGG 3 cut(s) 480, 667, 690
AluBI AGCT 7 cut(s) 11, 38, 346, 412, 437, 901, 1093
AluI AGCT 7 cut(s) 11, 38, 346, 412, 437, 901, 1093
Alw26I GTCTC 1 cut(s) 851
AlwI GGATC 5 cut(s) 236, 329, 342, 712, 725
AlwNI CAGNNNCTG 2 cut(s) 1148, 1184
Ama87I CYCGRG 1 cut(s) 854
AoxI GGCC 2 cut(s) 321, 670
ApeKI GCWGC 1 cut(s) 23
ApoI RAATTY 4 cut(s) 193, 468, 585, 1124
ArsI GACNNNNNNTTYG 6 cut(s) 776, 794, 808, 826, 1184, 1216
AspS9I GGNCC 1 cut(s) 485
AsuHPI GGTGA 7 cut(s) 202, 211, 527, 658, 786, 941, 1242
AsuII TTCGAA 1 cut(s) 1229
AvaI CYCGRG 1 cut(s) 854
AvaII GGWCC 1 cut(s) 485
AxyI CCTNAGG 1 cut(s) 489
BalI TGGCCA 1 cut(s) 672
BamHI GGATCC 2 cut(s) 334, 717
BbvCI CCTCAGC 1 cut(s) 390
BbvI GCAGC 1 cut(s) 10
BceAI ACGGC 1 cut(s) 863
BciT130I CCWGG 3 cut(s) 482, 669, 692
BcoDI GTCTC 1 cut(s) 851
BfaI CTAG 2 cut(s) 423, 702
BfrI CTTAAG 1 cut(s) 455
BfuAI ACCTGC 1 cut(s) 1064
BisI GCNGC 3 cut(s) 24, 321, 866
BlsI GCNGC 3 cut(s) 25, 322, 867
Bme1390I CCNGG 3 cut(s) 482, 669, 692
Bme18I GGWCC 1 cut(s) 485
BmeT110I CYCGRG 1 cut(s) 854
BmgBI CACGTC 2 cut(s) 341, 1248
BmgT120I GGNCC 1 cut(s) 485
BmiI GGNNCC 5 cut(s) 336, 486, 719, 1078, 1281
BmrFI CCNGG 3 cut(s) 482, 669, 692
BmsI GCATC 3 cut(s) 164, 219, 360
BpmI CTGGAG 1 cut(s) 917
Bpu10I CCTNAGC 1 cut(s) 390
Bpu14I TTCGAA 1 cut(s) 1229
BpuEI CTTGAG 1 cut(s) 196
Bsa29I ATCGAT 2 cut(s) 240, 1166
BsaI GGTCTC 1 cut(s) 851
BsaJI CCNNGG 3 cut(s) 181, 481, 690
Bsc4I CCNNNNNNNGG 2 cut(s) 187, 276
Bse1I ACTGG 2 cut(s) 831, 900
Bse21I CCTNAGG 1 cut(s) 489
Bse3DI GCAATG 2 cut(s) 114, 873
BseBI CCWGG 3 cut(s) 482, 669, 692
BseCI ATCGAT 2 cut(s) 240, 1166
BseDI CCNNGG 3 cut(s) 181, 481, 690
BseGI GGATG 1 cut(s) 1264
BseLI CCNNNNNNNGG 2 cut(s) 187, 276
BseMI GCAATG 2 cut(s) 114, 873
BseMII CTCAG 5 cut(s) 381, 480, 698, 876, 1101
BseNI ACTGG 2 cut(s) 831, 900
BseRI GAGGAG 2 cut(s) 407, 533
BseXI GCAGC 1 cut(s) 10
Bsh1236I CGCG 1 cut(s) 1052
BshFI GGCC 2 cut(s) 323, 672
BshVI ATCGAT 2 cut(s) 240, 1166
BsiHKCI CYCGRG 1 cut(s) 854
BslI CCNNNNNNNGG 2 cut(s) 187, 276
BsmAI GTCTC 1 cut(s) 851
BsnI GGCC 2 cut(s) 323, 672
Bso31I GGTCTC 1 cut(s) 851
BsoBI CYCGRG 1 cut(s) 854
Bsp119I TTCGAA 1 cut(s) 1229
Bsp143I GATC 4 cut(s) 241, 334, 717, 981
Bsp19I CCATGG 1 cut(s) 181
BspACI CCGC 6 cut(s) 320, 523, 714, 865, 1050, 1209
BspANI GGCC 2 cut(s) 323, 672
BspCNI CTCAG 5 cut(s) 382, 481, 699, 877, 1100
BspDI ATCGAT 2 cut(s) 240, 1166
BspFNI CGCG 1 cut(s) 1052
BspLI GGNNCC 5 cut(s) 336, 486, 719, 1078, 1281
BspMI ACCTGC 1 cut(s) 1064
BspPI GGATC 5 cut(s) 236, 329, 342, 712, 725
BspQI GCTCTTC 1 cut(s) 310
BspT104I TTCGAA 1 cut(s) 1229
BspTI CTTAAG 1 cut(s) 455
BspTNI GGTCTC 1 cut(s) 851
BsrBI CCGCTC 2 cut(s) 320, 523
BsrDI GCAATG 2 cut(s) 114, 873
BsrI ACTGG 2 cut(s) 831, 900
BssECI CCNNGG 3 cut(s) 181, 481, 690
BssMI GATC 4 cut(s) 241, 334, 717, 981
BssT1I CCWWGG 1 cut(s) 181
Bst2UI CCWGG 3 cut(s) 482, 669, 692
Bst4CI ACNGT 2 cut(s) 640, 862
Bst6I CTCTTC 4 cut(s) 269, 310, 1226, 1231
BstAFI CTTAAG 1 cut(s) 455
BstBI TTCGAA 1 cut(s) 1229
BstC8I GCNNGC 1 cut(s) 656
BstDEI CTNAG 6 cut(s) 80, 390, 489, 707, 885, 1087
BstDSI CCRYGG 1 cut(s) 181
BstEII GGTNACC 1 cut(s) 929
BstF5I GGATG 1 cut(s) 1264
BstFNI CGCG 1 cut(s) 1052
BstKTI GATC 4 cut(s) 244, 337, 720, 984
BstMAI GTCTC 1 cut(s) 851
BstMBI GATC 4 cut(s) 241, 334, 717, 981
BstMWI GCNNNNNNNGC 1 cut(s) 1015
BstNI CCWGG 3 cut(s) 482, 669, 692
BstNSI RCATGY 1 cut(s) 613
BstPI GGTNACC 1 cut(s) 929
BstSCI CCNGG 3 cut(s) 480, 667, 690
BstUI CGCG 1 cut(s) 1052
BstV1I GCAGC 1 cut(s) 10
BstX2I RGATCY 2 cut(s) 334, 717
BstYI RGATCY 2 cut(s) 334, 717
Bsu15I ATCGAT 2 cut(s) 240, 1166
Bsu36I CCTNAGG 1 cut(s) 489
BsuRI GGCC 2 cut(s) 323, 672
BsuTUI ATCGAT 2 cut(s) 240, 1166
BtgI CCRYGG 1 cut(s) 181
BtrI CACGTC 2 cut(s) 341, 1248
BtsCI GGATG 1 cut(s) 1264
BtsIMutI CAGTG 1 cut(s) 824
BveI ACCTGC 1 cut(s) 1064
Cac8I GCNNGC 1 cut(s) 656
CaiI CAGNNNCTG 2 cut(s) 1148, 1184
Cfr13I GGNCC 1 cut(s) 485
ClaI ATCGAT 2 cut(s) 240, 1166
Csp6I GTAC 5 cut(s) 406, 494, 677, 841, 1267
CviAII CATG 7 cut(s) 159, 182, 610, 632, 660, 680, 778
CviQI GTAC 5 cut(s) 406, 494, 677, 841, 1267
DdeI CTNAG 6 cut(s) 80, 390, 489, 707, 885, 1087
DpnI GATC 4 cut(s) 243, 336, 719, 983
DpnII GATC 4 cut(s) 241, 334, 717, 981
EaeI YGGCCR 2 cut(s) 321, 670
Eam1104I CTCTTC 4 cut(s) 269, 310, 1226, 1231
EarI CTCTTC 4 cut(s) 269, 310, 1226, 1231
EciI GGCGGA 1 cut(s) 1198
Eco130I CCWWGG 1 cut(s) 181
Eco31I GGTCTC 1 cut(s) 851
Eco32I GATATC 1 cut(s) 204
Eco47I GGWCC 1 cut(s) 485
Eco57I CTGAAG 3 cut(s) 1134, 1170, 1206
Eco81I CCTNAGG 1 cut(s) 489
Eco88I CYCGRG 1 cut(s) 854
Eco91I GGTNACC 1 cut(s) 929
EcoO109I RGGNCCY 1 cut(s) 485
EcoO65I GGTNACC 1 cut(s) 929
EcoRII CCWGG 3 cut(s) 480, 667, 690
EcoRV GATATC 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 181
EcoT22I ATGCAT 2 cut(s) 615, 621
ErhI CCWWGG 1 cut(s) 181
FaeI CATG 7 cut(s) 162, 185, 613, 635, 663, 683, 781
FatI CATG 7 cut(s) 158, 181, 609, 631, 659, 679, 777
FauI CCCGC 1 cut(s) 707
FauNDI CATATG 1 cut(s) 615
Fnu4HI GCNGC 3 cut(s) 24, 321, 866
FokI GGATG 1 cut(s) 1271
Fsp4HI GCNGC 3 cut(s) 24, 321, 866
FspBI CTAG 2 cut(s) 423, 702
GluI GCNGC 3 cut(s) 24, 321, 866
GsuI CTGGAG 1 cut(s) 917
HaeIII GGCC 2 cut(s) 323, 672
Hin1II CATG 7 cut(s) 162, 185, 613, 635, 663, 683, 781
HindIII AAGCTT 2 cut(s) 410, 435
HphI GGTGA 7 cut(s) 202, 211, 527, 658, 786, 941, 1242
Hpy166II GTNNAC 1 cut(s) 665
Hpy188III TCNNGA 4 cut(s) 226, 355, 488, 856
Hpy8I GTNNAC 1 cut(s) 665
HpyAV CCTTC 3 cut(s) 72, 325, 883
HpyCH4III ACNGT 2 cut(s) 640, 862
HpyCH4IV ACGT 2 cut(s) 340, 1247
HpyCH4V TGCA 7 cut(s) 119, 232, 566, 613, 619, 654, 920
HpyF10VI GCNNNNNNNGC 1 cut(s) 1015
HpyF3I CTNAG 6 cut(s) 80, 390, 489, 707, 885, 1087
HpySE526I ACGT 2 cut(s) 340, 1247
Hsp92II CATG 7 cut(s) 162, 185, 613, 635, 663, 683, 781
Kzo9I GATC 4 cut(s) 241, 334, 717, 981
LguI GCTCTTC 1 cut(s) 310
LmnI GCTCC 2 cut(s) 520, 898
Lsp1109I GCAGC 1 cut(s) 10
LweI GCATC 3 cut(s) 164, 219, 360
MaeI CTAG 2 cut(s) 423, 702
MaeII ACGT 2 cut(s) 340, 1247
MaeIII GTNAC 3 cut(s) 792, 929, 1248
MalI GATC 4 cut(s) 243, 336, 719, 983
MbiI CCGCTC 2 cut(s) 320, 523
MboI GATC 4 cut(s) 241, 334, 717, 981
MflI RGATCY 2 cut(s) 334, 717
MlsI TGGCCA 1 cut(s) 672
MluCI AATT 8 cut(s) 108, 193, 468, 559, 585, 696, 723, 1124
MluNI TGGCCA 1 cut(s) 672
MlyI GAGTC 1 cut(s) 1063
MmeI TCCRAC 3 cut(s) 119, 715, 995
Mox20I TGGCCA 1 cut(s) 672
Mph1103I ATGCAT 2 cut(s) 615, 621
MscI TGGCCA 1 cut(s) 672
MseI TTAA 6 cut(s) 281, 456, 606, 837, 1002, 1285
MslI CAYNNNNRTG 2 cut(s) 614, 684
Msp20I TGGCCA 1 cut(s) 672
MspCI CTTAAG 1 cut(s) 455
MspR9I CCNGG 3 cut(s) 482, 669, 692
MvaI CCWGG 3 cut(s) 482, 669, 692
MvnI CGCG 1 cut(s) 1052
MwoI GCNNNNNNNGC 1 cut(s) 1015
NcoI CCATGG 1 cut(s) 181
NdeI CATATG 1 cut(s) 615
NdeII GATC 4 cut(s) 241, 334, 717, 981
NlaIII CATG 7 cut(s) 162, 185, 613, 635, 663, 683, 781
NlaIV GGNNCC 5 cut(s) 336, 486, 719, 1078, 1281
NmeAIII GCCGAG 1 cut(s) 327
NmuCI GTSAC 3 cut(s) 792, 929, 1248
NsiI ATGCAT 2 cut(s) 615, 621
NspI RCATGY 1 cut(s) 613
NspV TTCGAA 1 cut(s) 1229
PaeR7I CTCGAG 1 cut(s) 854
PciSI GCTCTTC 1 cut(s) 310
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PfeI GAWTC 9 cut(s) 399, 946, 989, 1028, 1109, 1139, 1145, 1181, 1205
PkrI GCNGC 3 cut(s) 25, 322, 867
PleI GAGTC 1 cut(s) 1062
PpsI GAGTC 1 cut(s) 1062
PpuMI RGGWCCY 1 cut(s) 485
Psp5II RGGWCCY 1 cut(s) 485
Psp6I CCWGG 3 cut(s) 480, 667, 690
PspEI GGTNACC 1 cut(s) 929
PspGI CCWGG 3 cut(s) 480, 667, 690
PspN4I GGNNCC 5 cut(s) 336, 486, 719, 1078, 1281
PspPI GGNCC 1 cut(s) 485
PspPPI RGGWCCY 1 cut(s) 485
PstNI CAGNNNCTG 2 cut(s) 1148, 1184
PsuI RGATCY 2 cut(s) 334, 717
RsaI GTAC 5 cut(s) 407, 495, 678, 842, 1268
RsaNI GTAC 5 cut(s) 406, 494, 677, 841, 1267
RseI CAYNNNNRTG 2 cut(s) 614, 684
SapI GCTCTTC 1 cut(s) 310
SaqAI TTAA 6 cut(s) 281, 456, 606, 837, 1002, 1285
SatI GCNGC 3 cut(s) 24, 321, 866
Sau3AI GATC 4 cut(s) 241, 334, 717, 981
Sau96I GGNCC 1 cut(s) 485
SchI GAGTC 1 cut(s) 1063
ScrFI CCNGG 3 cut(s) 482, 669, 692
SfaNI GCATC 3 cut(s) 164, 219, 360
Sfr274I CTCGAG 1 cut(s) 854
SfuI TTCGAA 1 cut(s) 1229
SinI GGWCC 1 cut(s) 485
SlaI CTCGAG 1 cut(s) 854
SmiMI CAYNNNNRTG 2 cut(s) 614, 684
SmlI CTYRAG 3 cut(s) 175, 455, 854
SmoI CTYRAG 3 cut(s) 175, 455, 854
Sse9I AATT 8 cut(s) 108, 193, 468, 559, 585, 696, 723, 1124
SsiI CCGC 6 cut(s) 320, 523, 714, 865, 1050, 1209
SspI AATATT 1 cut(s) 753
SspMI CTAG 2 cut(s) 423, 702
StyD4I CCNGG 3 cut(s) 480, 667, 690
StyI CCWWGG 1 cut(s) 181
TaaI ACNGT 2 cut(s) 640, 862
TaiI ACGT 2 cut(s) 343, 1250
TaqI TCGA 6 cut(s) 225, 240, 760, 855, 1166, 1229
TasI AATT 8 cut(s) 108, 193, 468, 559, 585, 696, 723, 1124
TatI WGTACW 2 cut(s) 405, 676
TauI GCSGC 2 cut(s) 323, 868
TfiI GAWTC 9 cut(s) 399, 946, 989, 1028, 1109, 1139, 1145, 1181, 1205
Tru1I TTAA 6 cut(s) 281, 456, 606, 837, 1002, 1285
Tru9I TTAA 6 cut(s) 281, 456, 606, 837, 1002, 1285
TscAI CASTG 1 cut(s) 831
TseFI GTSAC 3 cut(s) 792, 929, 1248
TseI GCWGC 1 cut(s) 23
Tsp45I GTSAC 3 cut(s) 792, 929, 1248
TspDTI ATGAA 7 cut(s) 103, 480, 548, 648, 696, 862, 1230
TspRI CASTG 1 cut(s) 831
Vha464I CTTAAG 1 cut(s) 455
VpaK11BI GGWCC 1 cut(s) 485
XapI RAATTY 4 cut(s) 193, 468, 585, 1124
XceI RCATGY 1 cut(s) 613
XcmI CCANNNNNNNNNTGG 1 cut(s) 958
XhoI CTCGAG 1 cut(s) 854
XspI CTAG 2 cut(s) 423, 702
Zsp2I ATGCAT 2 cut(s) 615, 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.