Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0009609

Physical Location & Seq

Genomic Coordinates Reverse (-)

4253373 .. 4257185

Gene Structure 3813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGCCCAAAAACGAAAAGAGCCCACTTTTATTTGGTTTCGATATCTCCCTCCATTTGGCTACTGCGTTCTCCAGTTAACCACCGTTCGAAACTCATCAATGGAGGTGGCAACCACGGCTTCCTGCTTCGCGCTCCACACGCGCATGTTAGCAACGCCCACCACTCTCCGAGCCCTGAACACTACCCGCCCCCATCTGACGTCGTCTCATTCCCCTCCCAGAGCCTCCCTCTCCACCAGCTTCCTCTCTCCCTTCGCCGGCAACAGCCTCTCCTCCGACTTCTCCGGCCACAAGCTCCGCCCTTCATTCCTCAATCCGGCGTCGTCTTGTGGCTCCAAACCCACACGCGGCGTCGTCACCATGGTTATTCCATTTCAAAGAGGAAGTGCATGGGAGCAGCCGCCTCCGGACCTGGCATCATATCTGTACAAAAACCGAATAGTGTACTTGGGCATGTCACTTGTTCCTTCGGTGACGGAGTTGATACTTGCCGAATTTCTCTACCTTCAGTACGAAGACGACACGAAGCCCATTTACTTGTACATTAATTCCACAGGAACAACCAAGGGTGGGGAGAAGTTGGGTTATGAAACAGAGGCTTTTGCAATATATGATGTCATGAGGTATGTCAAGCCACCTATATTTACTCTTTGTGTTGGTAATGCTTGGGGAGAAGCTGCCTTACTTTTGGCTGCTGGTGCAAAGGGAAACCGTTCTGCTTTACCCTCATCAACAATCATGATGAAGCAGCCGATTGCAAGGTTTCAAGGTCAAGCAACAGATATTGAACTTGCAAGAAAGGAAGTGAGGAACGTTAAAGACGAGTTGGTTAAACTCTTCGCAAAGCATGTGGGAAAGTCAACTGAGCAAATTGAAGCAGACATTAGGCGTCCGAAATATTTTAGTCCAAGTGAGGCAGTTGACTATGGCATCATTGACAAGGTACTGTACAATGAAAGGAGTACCGAAGACAGGGGAGTTGTCTCAGACCTTAAAAAAGCACAACTTATTCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0010468 GO:0019222 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

339

Amino Acids

37.57

Weight (kDa)

9.34

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLP_protease	PF00574	137 - 317	3.6e-51	Clp protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17040
fragaria_vesca	FvH4_5g20310 FvH4_5g20310 FvH4_5g20310
malus_domestica	MD04G1052700.v1.1 MD06G1047500.v1.1
prunus_persica	Prupe.5G057800_v2.0.a1
pyrus_communis	pycom04g04640 pycom06g04040
rosa_chinensis	RchiOBHm_Chr7g0205411
rosa_laevigata	RLG00000003383
rosa_multiflora	Rmu_ssc0000004.1_g000001 Rmu_ssc0000004.1_g000005
rosa_roxburghii	Rroxscaffold_3G00252400
rosa_rugosa	Rorug07G0091100 Rorug07G0091200 Rorug07G0091200
rosa_samantha	Rh7AG221000 Rh7BG217300 Rh7CG234100 Rh7DG228000
rosa_wichuraiana	Rw7G019100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	203
AccII	CGCG	3 cut(s)	131, 142, 348
AccIII	TCCGGA	1 cut(s)	406
AciI	CCGC	4 cut(s)	187, 298, 348, 401
AclI	AACGTT	1 cut(s)	813
AcoI	YGGCCR	1 cut(s)	286
AcsI	RAATTY	1 cut(s)	494
AcuI	CTGAAG	1 cut(s)	491
AcyI	GRCGYC	4 cut(s)	200, 320, 351, 889
AfaI	GTAC	7 cut(s)	428, 446, 512, 542, 945, 950, 964
AfiI	CCNNNNNNNGG	6 cut(s)	56, 257, 316, 347, 570, 972
AgsI	TTSAA	4 cut(s)	377, 767, 788, 875
AjnI	CCWGG	1 cut(s)	411
AluBI	AGCT	3 cut(s)	240, 295, 677
AluI	AGCT	3 cut(s)	240, 295, 677
Alw26I	GTCTC	2 cut(s)	210, 988
Aor13HI	TCCGGA	1 cut(s)	406
AoxI	GGCC	2 cut(s)	3, 286
ApeKI	GCWGC	4 cut(s)	397, 677, 692, 748
ApoI	RAATTY	1 cut(s)	494
AseI	ATTAAT	1 cut(s)	546
Asp700I	GAANNNNTTC	1 cut(s)	712
AspLEI	GCGC	2 cut(s)	133, 144
AspS9I	GGNCC	2 cut(s)	4, 409
AsuHPI	GGTGA	2 cut(s)	349, 484
AsuII	TTCGAA	1 cut(s)	88
AvaII	GGWCC	1 cut(s)	409
BanII	GRGCYC	2 cut(s)	24, 175
BarI	GAAGNNNNNNTAC	4 cut(s)	518, 550, 666, 698
BbsI	GAAGAC	2 cut(s)	522, 975
BbvI	GCAGC	4 cut(s)	409, 664, 679, 760
BccI	CCATC	1 cut(s)	201
BceAI	ACGGC	1 cut(s)	132
BciT130I	CCWGG	1 cut(s)	413
BcoDI	GTCTC	2 cut(s)	210, 988
BisI	GCNGC	6 cut(s)	349, 398, 401, 678, 693, 749
BlsI	GCNGC	6 cut(s)	350, 399, 402, 679, 694, 750
Bme1390I	CCNGG	1 cut(s)	413
Bme18I	GGWCC	1 cut(s)	409
BmgT120I	GGNCC	2 cut(s)	4, 409
BmiI	GGNNCC	1 cut(s)	334
BmrFI	CCNGG	1 cut(s)	413
BmsI	GCATC	2 cut(s)	425, 939
BpiI	GAAGAC	2 cut(s)	522, 975
BplI	GAGNNNNNCTC	2 cut(s)	213, 245
BpmI	CTGGAG	1 cut(s)	56
Bpu14I	TTCGAA	1 cut(s)	88
BsaHI	GRCGYC	4 cut(s)	200, 320, 351, 889
BsaJI	CCNNGG	3 cut(s)	114, 360, 564
BsaWI	WCCGGW	1 cut(s)	406
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	6 cut(s)	56, 257, 316, 347, 570, 972
Bse118I	RCCGGY	1 cut(s)	257
Bse1I	ACTGG	1 cut(s)	73
BseAI	TCCGGA	1 cut(s)	406
BseBI	CCWGG	1 cut(s)	413
BseDI	CCNNGG	3 cut(s)	114, 360, 564
BseLI	CCNNNNNNNGG	6 cut(s)	56, 257, 316, 347, 570, 972
BseMII	CTCAG	2 cut(s)	855, 999
BseNI	ACTGG	1 cut(s)	73
BseRI	GAGGAG	1 cut(s)	262
BseXI	GCAGC	4 cut(s)	409, 664, 679, 760
Bsh1236I	CGCG	3 cut(s)	131, 142, 348
BshFI	GGCC	2 cut(s)	5, 288
BsiSI	CCGG	4 cut(s)	258, 285, 317, 407
BslI	CCNNNNNNNGG	6 cut(s)	56, 257, 316, 347, 570, 972
BsmAI	GTCTC	2 cut(s)	210, 988
BsmBI	CGTCTC	1 cut(s)	210
BsnI	GGCC	2 cut(s)	5, 288
Bsp119I	TTCGAA	1 cut(s)	88
Bsp1286I	GDGCHC	2 cut(s)	24, 175
Bsp13I	TCCGGA	1 cut(s)	406
Bsp1407I	TGTACA	3 cut(s)	426, 540, 948
Bsp19I	CCATGG	1 cut(s)	360
BspACI	CCGC	4 cut(s)	187, 298, 348, 401
BspANI	GGCC	2 cut(s)	5, 288
BspCNI	CTCAG	2 cut(s)	856, 998
BspEI	TCCGGA	1 cut(s)	406
BspFNI	CGCG	3 cut(s)	131, 142, 348
BspHI	TCATGA	2 cut(s)	618, 738
BspLI	GGNNCC	1 cut(s)	334
BspT104I	TTCGAA	1 cut(s)	88
BsrFI	RCCGGY	1 cut(s)	257
BsrGI	TGTACA	3 cut(s)	426, 540, 948
BsrI	ACTGG	1 cut(s)	73
BssAI	RCCGGY	1 cut(s)	257
BssECI	CCNNGG	3 cut(s)	114, 360, 564
BssNI	GRCGYC	4 cut(s)	200, 320, 351, 889
BssT1I	CCWWGG	2 cut(s)	360, 564
Bst2UI	CCWGG	1 cut(s)	413
Bst4CI	ACNGT	3 cut(s)	85, 713, 948
Bst6I	CTCTTC	1 cut(s)	842
BstACI	GRCGYC	4 cut(s)	200, 320, 351, 889
BstAUI	TGTACA	3 cut(s)	426, 540, 948
BstBI	TTCGAA	1 cut(s)	88
BstC8I	GCNNGC	1 cut(s)	259
BstDEI	CTNAG	2 cut(s)	864, 985
BstDSI	CCRYGG	2 cut(s)	114, 360
BstFNI	CGCG	3 cut(s)	131, 142, 348
BstHHI	GCGC	2 cut(s)	133, 144
BstMAI	GTCTC	2 cut(s)	210, 988
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 139, 698
BstNI	CCWGG	1 cut(s)	413
BstNSI	RCATGY	3 cut(s)	148, 457, 851
BstSCI	CCNGG	1 cut(s)	411
BstUI	CGCG	3 cut(s)	131, 142, 348
BstV1I	GCAGC	4 cut(s)	409, 664, 679, 760
BstV2I	GAAGAC	2 cut(s)	522, 975
BsuRI	GGCC	2 cut(s)	5, 288
BtgI	CCRYGG	2 cut(s)	114, 360
Cac8I	GCNNGC	1 cut(s)	259
CciI	TCATGA	2 cut(s)	618, 738
CfoI	GCGC	2 cut(s)	133, 144
Cfr10I	RCCGGY	1 cut(s)	257
Cfr13I	GGNCC	2 cut(s)	4, 409
CseI	GACGC	3 cut(s)	309, 340, 878
Csp6I	GTAC	7 cut(s)	427, 445, 511, 541, 944, 949, 963
CspCI	CAANNNNNGTGG	4 cut(s)	87, 122, 831, 866
CviAII	CATG	7 cut(s)	145, 361, 390, 454, 619, 739, 848
CviQI	GTAC	7 cut(s)	427, 445, 511, 541, 944, 949, 963
DdeI	CTNAG	2 cut(s)	864, 985
EaeI	YGGCCR	1 cut(s)	286
Eam1104I	CTCTTC	1 cut(s)	842
EarI	CTCTTC	1 cut(s)	842
EciI	GGCGGA	1 cut(s)	287
Eco130I	CCWWGG	2 cut(s)	360, 564
Eco24I	GRGCYC	2 cut(s)	24, 175
Eco32I	GATATC	1 cut(s)	44
Eco47I	GGWCC	1 cut(s)	409
Eco57I	CTGAAG	1 cut(s)	491
EcoRII	CCWGG	1 cut(s)	411
EcoRV	GATATC	1 cut(s)	44
EcoT14I	CCWWGG	2 cut(s)	360, 564
EcoT38I	GRGCYC	2 cut(s)	24, 175
ErhI	CCWWGG	2 cut(s)	360, 564
Esp3I	CGTCTC	1 cut(s)	210
FaeI	CATG	7 cut(s)	148, 364, 393, 457, 622, 742, 851
FalI	AAGNNNNNCTT	1 cut(s)	990
FatI	CATG	7 cut(s)	144, 360, 389, 453, 618, 738, 847
FauI	CCCGC	1 cut(s)	194
Fnu4HI	GCNGC	6 cut(s)	349, 398, 401, 678, 693, 749
FriOI	GRGCYC	2 cut(s)	24, 175
Fsp4HI	GCNGC	6 cut(s)	349, 398, 401, 678, 693, 749
GlaI	GCGC	2 cut(s)	132, 143
GluI	GCNGC	6 cut(s)	349, 398, 401, 678, 693, 749
GsuI	CTGGAG	1 cut(s)	56
HaeIII	GGCC	2 cut(s)	5, 288
HapII	CCGG	4 cut(s)	258, 285, 317, 407
HgaI	GACGC	3 cut(s)	309, 340, 878
HhaI	GCGC	2 cut(s)	133, 144
Hin1I	GRCGYC	4 cut(s)	200, 320, 351, 889
Hin1II	CATG	7 cut(s)	148, 364, 393, 457, 622, 742, 851
Hin6I	GCGC	2 cut(s)	131, 142
HinP1I	GCGC	2 cut(s)	131, 142
HincII	GTYRAC	3 cut(s)	78, 861, 922
HindII	GTYRAC	3 cut(s)	78, 861, 922
HpaI	GTTAAC	1 cut(s)	78
HpaII	CCGG	4 cut(s)	258, 285, 317, 407
HphI	GGTGA	2 cut(s)	349, 484
Hpy166II	GTNNAC	4 cut(s)	78, 445, 861, 922
Hpy188I	TCNGA	5 cut(s)	170, 198, 277, 894, 988
Hpy188III	TCNNGA	3 cut(s)	407, 619, 739
Hpy8I	GTNNAC	4 cut(s)	78, 445, 861, 922
Hpy99I	CGWCG	3 cut(s)	205, 325, 356
HpyAV	CCTTC	4 cut(s)	262, 312, 477, 515
HpyCH4III	ACNGT	3 cut(s)	85, 713, 948
HpyCH4IV	ACGT	2 cut(s)	200, 813
HpyCH4V	TGCA	5 cut(s)	389, 605, 701, 758, 794
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 139, 698
HpyF3I	CTNAG	2 cut(s)	864, 985
HpySE526I	ACGT	2 cut(s)	200, 813
Hsp92I	GRCGYC	4 cut(s)	200, 320, 351, 889
Hsp92II	CATG	7 cut(s)	148, 364, 393, 457, 622, 742, 851
HspAI	GCGC	2 cut(s)	131, 142
Kpn2I	TCCGGA	1 cut(s)	406
KroI	GCCGGC	1 cut(s)	257
KroNI	GCCGGC	1 cut(s)	259
KspAI	GTTAAC	1 cut(s)	78
LmnI	GCTCC	4 cut(s)	138, 300, 338, 394
Lsp1109I	GCAGC	4 cut(s)	409, 664, 679, 760
LweI	GCATC	2 cut(s)	425, 939
MaeII	ACGT	2 cut(s)	200, 813
MaeIII	GTNAC	3 cut(s)	355, 456, 472
MboII	GAAGA	3 cut(s)	527, 829, 980
MhlI	GDGCHC	2 cut(s)	24, 175
MluCI	AATT	3 cut(s)	494, 547, 870
MmeI	TCCRAC	1 cut(s)	300
MroI	TCCGGA	1 cut(s)	406
MroNI	GCCGGC	1 cut(s)	257
MroXI	GAANNNNTTC	1 cut(s)	712
MseI	TTAA	5 cut(s)	77, 546, 816, 831, 993
MslI	CAYNNNNRTG	1 cut(s)	143
MspI	CCGG	4 cut(s)	258, 285, 317, 407
MspR9I	CCNGG	1 cut(s)	413
MvaI	CCWGG	1 cut(s)	413
MvnI	CGCG	3 cut(s)	131, 142, 348
MwoI	GCNNNNNNNGC	3 cut(s)	116, 139, 698
NaeI	GCCGGC	1 cut(s)	259
NcoI	CCATGG	1 cut(s)	360
NgoMIV	GCCGGC	1 cut(s)	257
NlaIII	CATG	7 cut(s)	148, 364, 393, 457, 622, 742, 851
NlaIV	GGNNCC	1 cut(s)	334
NmuCI	GTSAC	3 cut(s)	355, 456, 472
NspI	RCATGY	3 cut(s)	148, 457, 851
NspV	TTCGAA	1 cut(s)	88
PagI	TCATGA	2 cut(s)	618, 738
PcsI	WCGNNNNNNNCGW	1 cut(s)	819
PdiI	GCCGGC	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	712
PflFI	GACNNNGTC	1 cut(s)	202
PkrI	GCNGC	6 cut(s)	350, 399, 402, 679, 694, 750
PshBI	ATTAAT	1 cut(s)	546
Psp1406I	AACGTT	1 cut(s)	813
Psp6I	CCWGG	1 cut(s)	411
PspGI	CCWGG	1 cut(s)	411
PspN4I	GGNNCC	1 cut(s)	334
PspPI	GGNCC	2 cut(s)	4, 409
PsyI	GACNNNGTC	1 cut(s)	202
RsaI	GTAC	7 cut(s)	428, 446, 512, 542, 945, 950, 964
RsaNI	GTAC	7 cut(s)	427, 445, 511, 541, 944, 949, 963
RseI	CAYNNNNRTG	1 cut(s)	143
SaqAI	TTAA	5 cut(s)	77, 546, 816, 831, 993
SatI	GCNGC	6 cut(s)	349, 398, 401, 678, 693, 749
Sau96I	GGNCC	2 cut(s)	4, 409
ScrFI	CCNGG	1 cut(s)	413
SduI	GDGCHC	2 cut(s)	24, 175
SfaNI	GCATC	2 cut(s)	425, 939
SfuI	TTCGAA	1 cut(s)	88
SinI	GGWCC	1 cut(s)	409
SmiMI	CAYNNNNRTG	1 cut(s)	143
Sse9I	AATT	3 cut(s)	494, 547, 870
SsiI	CCGC	4 cut(s)	187, 298, 348, 401
SspI	AATATT	1 cut(s)	899
StyD4I	CCNGG	1 cut(s)	411
StyI	CCWWGG	2 cut(s)	360, 564
TaaI	ACNGT	3 cut(s)	85, 713, 948
TaiI	ACGT	2 cut(s)	203, 816
TaqI	TCGA	2 cut(s)	40, 88
TasI	AATT	3 cut(s)	494, 547, 870
TatI	WGTACW	4 cut(s)	426, 444, 540, 948
TauI	GCSGC	2 cut(s)	351, 403
Tru1I	TTAA	5 cut(s)	77, 546, 816, 831, 993
Tru9I	TTAA	5 cut(s)	77, 546, 816, 831, 993
TseFI	GTSAC	3 cut(s)	355, 456, 472
TseI	GCWGC	4 cut(s)	397, 677, 692, 748
Tsp45I	GTSAC	3 cut(s)	355, 456, 472
TspDTI	ATGAA	4 cut(s)	294, 603, 758, 969
TspGWI	ACGGA	2 cut(s)	491, 1002
Tth111I	GACNNNGTC	1 cut(s)	202
VpaK11BI	GGWCC	1 cut(s)	409
VspI	ATTAAT	1 cut(s)	546
XapI	RAATTY	1 cut(s)	494
XceI	RCATGY	3 cut(s)	148, 457, 851
XmnI	GAANNNNTTC	1 cut(s)	712
ZraI	GACGTC	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.