Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0005128

Physical Location & Seq

Genomic Coordinates Reverse (-)

5170582 .. 5172896

Gene Structure 2315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g05390.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGTACAGGATCGATTGGAACTTGCTGATACAGAGGCCGCTGTACCGGTTTATATTGAGGACATTCTTATTTTGTCCAGTGGGGGTTTTGATTAAAAATATATCAGAGGTGTTTTCGGTTTGGATTACCTATATTGAACCTTGGGATATCATTTTGGACTTTTCAGAGCTTGATGCTGTTGTTGGCGGTTCAACTAAGAATGGGAGAAATGATAACCTGCAGCCTCAAAACCATGGTTATACACCTTCTTGGCAGGGTTATGTGCTGGCCAGCTACTTGTACTACAGTTCCTTGGTTATGCATTTCATTGGGTTTGCGCACAAGTTTCTTCATACTGATCCCGAAATAATTGTCCAGATGGTATTGAAGATCCTAACTATATTGACATCATCCAAAGAGCTGATGGACCTATTAAAGATGGTGGATACTGCTTTTCATTCCAAACAAGCAGAATCAGGAAAATCGATAATTAATAGCTTATATAGATTTGTTACTCCGATTCGCGAACAGCTGCAGGACTGGGAGGATGGCTTATCTGAGAGTGATGCAGATGGGTCTTTCTTGCATGAGAATTGGAACAAAGATTTACGATTGTTCAGTGATGGAGAAGATGGCGGGCAACAGTTGCTTCAGCTGTTCATATTACGTGCAGAATCTGAGTTGCTAGCTGTTTCCGGTGATAATGGTGCGCGCAACCTTCAGTGCATAGACTCTTTGAAAGCTCAGGTGAGCTGTCTATTTGGTGGGCATACTGTAAAGGTACTGTCATTTTCTCCTGAACCAAAACAGCCACCGCAACCCCGTGATGAAATATTCAAGCCGAGGAGAGTGAGCAACCGCACTTTGGATGGTGTCAAATACAGGGGTGACTGGATGAAGCGCCCCATCTCCGACAATGAGGTTGCTTGGCTCGCGAGATTGCTTGTTGAGTTTTCCAGTTGGATAAATGAGCGTCTTGGACTAAACCAGTCAGAGAGCAGCCAAGCAGACCCTACATATGTGGAAGTGTCGAGAGATGTTTTGGGCAATGTCTTTGGACCGATGGATACGATGAAGGCGGTGTTGGGGGCAGTAGGTTCTTGGCTTATGATGTTGGGAGTGGCAATGGTGAAGCTAATGAGGAAACATGGATTGAGGGTGAATCTGAGGATGTTGGCGTCAAAGAAGGTTGTAATGGTTTTGTTATTGTCTGCTGTATATAGTATATTGAAAAAAGCTTTCGGAATGTACCTTAGGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

mit_SMPDase

Protein Analysis

414

Amino Acids

46.98

Weight (kDa)

7.71

Isoelectric Point (pI)

40.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47400
fragaria_vesca	FvH4_5g19410 FvH4_5g19410 FvH4_5g19410 FvH4_5g19410 FvH4_5g19410 FvH4_5g19410 FvH4_5g19410 FvH4_5g19410 FvH4_5g19410 FvH4_5g19410 FvH4_5g19410 FvH4_5g19410
malus_domestica	MD04G1060300.v1.1 MD06G1053300.v1.1
prunus_persica	Prupe.5G065400_v2.0.a1
pyrus_communis	pycom04g05390 pycom06g04500
rosa_chinensis	RchiOBHm_Chr7g0203921
rosa_laevigata	RLG00000003498
rosa_multiflora	Rmu_co8411937.1_g000001 Rmu_sc0013871.1_g000002 Rmu_sc0032022.1_g000002
rosa_roxburghii	Rroxscaffold_3G00253460
rosa_rugosa	Rorug07G0079400
rosa_samantha	Rh7AG209300 Rh7BG208100 Rh7CG221700 Rh7DG216400
rosa_wichuraiana	Rw7G018240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	318
Acc36I	ACCTGC	1 cut(s)	225
AccII	CGCG	3 cut(s)	504, 691, 914
AciI	CCGC	6 cut(s)	38, 186, 615, 794, 838, 1058
AclWI	GGATC	3 cut(s)	17, 332, 364
AcoI	YGGCCR	1 cut(s)	267
AcuI	CTGAAG	2 cut(s)	614, 683
AcyI	GRCGYC	1 cut(s)	1157
AfaI	GTAC	5 cut(s)	5, 44, 281, 762, 1229
AfiI	CCNNNNNNNGG	1 cut(s)	844
AgeI	ACCGGT	1 cut(s)	45
AgsI	TTSAA	6 cut(s)	137, 192, 367, 718, 817, 1210
AjuI	GAANNNNNNNTTGG	2 cut(s)	1046, 1078
AlwI	GGATC	3 cut(s)	17, 332, 364
AlwNI	CAGNNNCTG	1 cut(s)	656
AoxI	GGCC	2 cut(s)	35, 267
ApeKI	GCWGC	3 cut(s)	220, 511, 978
ArsI	GACNNNNNNTTYG	2 cut(s)	336, 368
AseI	ATTAAT	1 cut(s)	471
AsiGI	ACCGGT	1 cut(s)	45
AspLEI	GCGC	4 cut(s)	319, 691, 693, 882
AspS9I	GGNCC	2 cut(s)	406, 1037
AsuHPI	GGTGA	5 cut(s)	689, 739, 878, 1120, 1150
AsuNHI	GCTAGC	1 cut(s)	664
AvaII	GGWCC	2 cut(s)	406, 1037
AxyI	CCTNAGG	1 cut(s)	1232
BalI	TGGCCA	1 cut(s)	269
BbvI	GCAGC	3 cut(s)	232, 498, 990
BciVI	GTATCC	2 cut(s)	418, 1039
BfaI	CTAG	1 cut(s)	665
BfmI	CTRYAG	3 cut(s)	218, 283, 512
BfoI	RGCGCY	1 cut(s)	883
BfuAI	ACCTGC	1 cut(s)	225
BfuI	GTATCC	2 cut(s)	418, 1039
BisI	GCNGC	4 cut(s)	38, 221, 512, 979
BlsI	GCNGC	4 cut(s)	39, 222, 513, 980
Bme18I	GGWCC	2 cut(s)	406, 1037
BmgT120I	GGNCC	2 cut(s)	406, 1037
BmrI	ACTGGG	1 cut(s)	529
BmsI	GCATC	2 cut(s)	163, 535
BmtI	GCTAGC	1 cut(s)	668
BmuI	ACTGGG	1 cut(s)	529
Bpu10I	CCTNAGC	1 cut(s)	723
Bsa29I	ATCGAT	2 cut(s)	12, 464
BsaAI	YACGTR	1 cut(s)	647
BsaHI	GRCGYC	1 cut(s)	1157
BsaJI	CCNNGG	4 cut(s)	140, 232, 291, 821
BsaWI	WCCGGW	2 cut(s)	45, 674
Bsc4I	CCNNNNNNNGG	1 cut(s)	844
Bse118I	RCCGGY	1 cut(s)	45
Bse1I	ACTGG	5 cut(s)	77, 524, 875, 936, 967
Bse21I	CCTNAGG	1 cut(s)	1232
Bse3DI	GCAATG	2 cut(s)	1033, 1110
BseCI	ATCGAT	2 cut(s)	12, 464
BseDI	CCNNGG	4 cut(s)	140, 232, 291, 821
BseGI	GGATG	5 cut(s)	389, 532, 853, 879, 1155
BseLI	CCNNNNNNNGG	1 cut(s)	844
BseMI	GCAATG	2 cut(s)	1033, 1110
BseMII	CTCAG	4 cut(s)	528, 648, 737, 1136
BseNI	ACTGG	5 cut(s)	77, 524, 875, 936, 967
BsePI	GCGCGC	1 cut(s)	689
BseRI	GAGGAG	1 cut(s)	838
BseXI	GCAGC	3 cut(s)	232, 498, 990
BsgI	GTGCAG	1 cut(s)	669
Bsh1236I	CGCG	3 cut(s)	504, 691, 914
BshFI	GGCC	2 cut(s)	37, 269
BshTI	ACCGGT	1 cut(s)	45
BshVI	ATCGAT	2 cut(s)	12, 464
BsiSI	CCGG	2 cut(s)	46, 675
BslI	CCNNNNNNNGG	1 cut(s)	844
BsnI	GGCC	2 cut(s)	37, 269
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	3 cut(s)	9, 337, 369
Bsp19I	CCATGG	1 cut(s)	232
Bsp68I	TCGCGA	2 cut(s)	504, 914
BspACI	CCGC	6 cut(s)	38, 186, 615, 794, 838, 1058
BspANI	GGCC	2 cut(s)	37, 269
BspCNI	CTCAG	4 cut(s)	529, 649, 736, 1137
BspDI	ATCGAT	2 cut(s)	12, 464
BspFNI	CGCG	3 cut(s)	504, 691, 914
BspMAI	CTGCAG	2 cut(s)	222, 516
BspMI	ACCTGC	1 cut(s)	225
BspOI	GCTAGC	1 cut(s)	668
BspPI	GGATC	3 cut(s)	17, 332, 364
BsrDI	GCAATG	2 cut(s)	1033, 1110
BsrFI	RCCGGY	1 cut(s)	45
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	5 cut(s)	77, 524, 875, 936, 967
BssAI	RCCGGY	1 cut(s)	45
BssECI	CCNNGG	4 cut(s)	140, 232, 291, 821
BssHII	GCGCGC	1 cut(s)	689
BssMI	GATC	3 cut(s)	9, 337, 369
BssNI	GRCGYC	1 cut(s)	1157
BssT1I	CCWWGG	3 cut(s)	140, 232, 291
Bst4CI	ACNGT	4 cut(s)	287, 624, 754, 765
BstACI	GRCGYC	1 cut(s)	1157
BstAPI	GCANNNNNTGC	1 cut(s)	625
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	647
BstC8I	GCNNGC	6 cut(s)	267, 271, 617, 666, 691, 912
BstDEI	CTNAG	6 cut(s)	195, 537, 657, 723, 1145, 1232
BstDSI	CCRYGG	1 cut(s)	232
BstF5I	GGATG	5 cut(s)	389, 532, 853, 879, 1155
BstFNI	CGCG	3 cut(s)	504, 691, 914
BstH2I	RGCGCY	1 cut(s)	883
BstHHI	GCGC	4 cut(s)	319, 691, 693, 882
BstKTI	GATC	3 cut(s)	12, 340, 372
BstMBI	GATC	3 cut(s)	9, 337, 369
BstMWI	GCNNNNNNNGC	2 cut(s)	625, 911
BstSFI	CTRYAG	3 cut(s)	218, 283, 512
BstUI	CGCG	3 cut(s)	504, 691, 914
BstV1I	GCAGC	3 cut(s)	232, 498, 990
BstX2I	RGATCY	1 cut(s)	369
BstYI	RGATCY	1 cut(s)	369
Bsu15I	ATCGAT	2 cut(s)	12, 464
Bsu36I	CCTNAGG	1 cut(s)	1232
BsuI	GTATCC	2 cut(s)	418, 1039
BsuRI	GGCC	2 cut(s)	37, 269
BsuTUI	ATCGAT	2 cut(s)	12, 464
BtgI	CCRYGG	1 cut(s)	232
BtsCI	GGATG	5 cut(s)	389, 532, 853, 879, 1155
BtsIMutI	CAGTG	3 cut(s)	84, 604, 707
BtuMI	TCGCGA	2 cut(s)	504, 914
BveI	ACCTGC	1 cut(s)	225
Cac8I	GCNNGC	6 cut(s)	267, 271, 617, 666, 691, 912
CaiI	CAGNNNCTG	1 cut(s)	656
CfoI	GCGC	4 cut(s)	319, 691, 693, 882
Cfr10I	RCCGGY	1 cut(s)	45
Cfr13I	GGNCC	2 cut(s)	406, 1037
ClaI	ATCGAT	2 cut(s)	12, 464
CseI	GACGC	2 cut(s)	941, 1146
Csp6I	GTAC	5 cut(s)	4, 43, 280, 761, 1228
CspAI	ACCGGT	1 cut(s)	45
CviAII	CATG	3 cut(s)	233, 566, 1127
CviQI	GTAC	5 cut(s)	4, 43, 280, 761, 1228
DdeI	CTNAG	6 cut(s)	195, 537, 657, 723, 1145, 1232
DpnI	GATC	3 cut(s)	11, 339, 371
DpnII	GATC	3 cut(s)	9, 337, 369
EaeI	YGGCCR	1 cut(s)	267
Eco130I	CCWWGG	3 cut(s)	140, 232, 291
Eco32I	GATATC	1 cut(s)	148
Eco47I	GGWCC	2 cut(s)	406, 1037
Eco57I	CTGAAG	2 cut(s)	614, 683
Eco81I	CCTNAGG	1 cut(s)	1232
EcoRV	GATATC	1 cut(s)	148
EcoT14I	CCWWGG	3 cut(s)	140, 232, 291
EcoT22I	ATGCAT	1 cut(s)	303
ErhI	CCWWGG	3 cut(s)	140, 232, 291
FaeI	CATG	3 cut(s)	236, 569, 1130
FatI	CATG	3 cut(s)	232, 565, 1126
FauI	CCCGC	1 cut(s)	608
FauNDI	CATATG	1 cut(s)	997
Fnu4HI	GCNGC	4 cut(s)	38, 221, 512, 979
FokI	GGATG	5 cut(s)	376, 539, 860, 886, 1162
Fsp4HI	GCNGC	4 cut(s)	38, 221, 512, 979
FspBI	CTAG	1 cut(s)	665
FspI	TGCGCA	1 cut(s)	318
GlaI	GCGC	4 cut(s)	318, 690, 692, 881
GluI	GCNGC	4 cut(s)	38, 221, 512, 979
HaeII	RGCGCY	1 cut(s)	883
HaeIII	GGCC	2 cut(s)	37, 269
HapII	CCGG	2 cut(s)	46, 675
HgaI	GACGC	2 cut(s)	941, 1146
HhaI	GCGC	4 cut(s)	319, 691, 693, 882
Hin1I	GRCGYC	1 cut(s)	1157
Hin1II	CATG	3 cut(s)	236, 569, 1130
Hin6I	GCGC	4 cut(s)	317, 689, 691, 880
HinP1I	GCGC	4 cut(s)	317, 689, 691, 880
HindIII	AAGCTT	1 cut(s)	1215
HinfI	GANTC	5 cut(s)	452, 499, 653, 710, 1141
HpaII	CCGG	2 cut(s)	46, 675
HphI	GGTGA	5 cut(s)	689, 739, 878, 1120, 1150
Hpy188I	TCNGA	9 cut(s)	106, 166, 498, 538, 658, 892, 973, 1146, 1223
Hpy188III	TCNNGA	7 cut(s)	341, 355, 456, 503, 776, 913, 1011
HpyAV	CCTTC	4 cut(s)	255, 707, 1048, 1159
HpyCH4III	ACNGT	4 cut(s)	287, 624, 754, 765
HpyCH4IV	ACGT	1 cut(s)	646
HpyCH4V	TGCA	7 cut(s)	220, 301, 514, 548, 565, 650, 705
HpyF10VI	GCNNNNNNNGC	2 cut(s)	625, 911
HpyF3I	CTNAG	6 cut(s)	195, 537, 657, 723, 1145, 1232
HpySE526I	ACGT	1 cut(s)	646
Hsp92I	GRCGYC	1 cut(s)	1157
Hsp92II	CATG	3 cut(s)	236, 569, 1130
HspAI	GCGC	4 cut(s)	317, 689, 691, 880
Kzo9I	GATC	3 cut(s)	9, 337, 369
Lsp1109I	GCAGC	3 cut(s)	232, 498, 990
LweI	GCATC	2 cut(s)	163, 535
MaeI	CTAG	1 cut(s)	665
MaeII	ACGT	1 cut(s)	646
MaeIII	GTNAC	2 cut(s)	490, 866
MalI	GATC	3 cut(s)	11, 339, 371
MboI	GATC	3 cut(s)	9, 337, 369
MboII	GAAGA	3 cut(s)	320, 379, 620
MflI	RGATCY	1 cut(s)	369
MlsI	TGGCCA	1 cut(s)	269
MluCI	AATT	3 cut(s)	348, 468, 571
MluNI	TGGCCA	1 cut(s)	269
MlyI	GAGTC	1 cut(s)	704
MmeI	TCCRAC	2 cut(s)	915, 920
Mox20I	TGGCCA	1 cut(s)	269
Mph1103I	ATGCAT	1 cut(s)	303
MscI	TGGCCA	1 cut(s)	269
MseI	TTAA	3 cut(s)	93, 413, 471
Msp20I	TGGCCA	1 cut(s)	269
MspA1I	CMGCKG	3 cut(s)	40, 511, 634
MspI	CCGG	2 cut(s)	46, 675
MvnI	CGCG	3 cut(s)	504, 691, 914
MwoI	GCNNNNNNNGC	2 cut(s)	625, 911
NcoI	CCATGG	1 cut(s)	232
NdeI	CATATG	1 cut(s)	997
NdeII	GATC	3 cut(s)	9, 337, 369
NheI	GCTAGC	1 cut(s)	664
NlaIII	CATG	3 cut(s)	236, 569, 1130
NmeAIII	GCCGAG	1 cut(s)	846
NmuCI	GTSAC	1 cut(s)	866
NruI	TCGCGA	2 cut(s)	504, 914
NsbI	TGCGCA	1 cut(s)	318
NsiI	ATGCAT	1 cut(s)	303
PauI	GCGCGC	1 cut(s)	689
PfeI	GAWTC	4 cut(s)	452, 499, 653, 1141
PinAI	ACCGGT	1 cut(s)	45
PkrI	GCNGC	4 cut(s)	39, 222, 513, 980
PleI	GAGTC	1 cut(s)	704
PpsI	GAGTC	1 cut(s)	704
Ppu21I	YACGTR	1 cut(s)	647
PshBI	ATTAAT	1 cut(s)	471
PspPI	GGNCC	2 cut(s)	406, 1037
PstI	CTGCAG	2 cut(s)	222, 516
PstNI	CAGNNNCTG	1 cut(s)	656
PsuI	RGATCY	1 cut(s)	369
PteI	GCGCGC	1 cut(s)	689
PvuII	CAGCTG	2 cut(s)	511, 634
RruI	TCGCGA	2 cut(s)	504, 914
RsaI	GTAC	5 cut(s)	5, 44, 281, 762, 1229
RsaNI	GTAC	5 cut(s)	4, 43, 280, 761, 1228
SaqAI	TTAA	3 cut(s)	93, 413, 471
SatI	GCNGC	4 cut(s)	38, 221, 512, 979
Sau3AI	GATC	3 cut(s)	9, 337, 369
Sau96I	GGNCC	2 cut(s)	406, 1037
SchI	GAGTC	1 cut(s)	704
SfaNI	GCATC	2 cut(s)	163, 535
SfcI	CTRYAG	3 cut(s)	218, 283, 512
SinI	GGWCC	2 cut(s)	406, 1037
Sse9I	AATT	3 cut(s)	348, 468, 571
SsiI	CCGC	6 cut(s)	38, 186, 615, 794, 838, 1058
SspI	AATATT	1 cut(s)	813
SspMI	CTAG	1 cut(s)	665
StyI	CCWWGG	3 cut(s)	140, 232, 291
TaaI	ACNGT	4 cut(s)	287, 624, 754, 765
TaiI	ACGT	1 cut(s)	649
TaqI	TCGA	3 cut(s)	12, 464, 1010
TaqII	GACCGA	1 cut(s)	1054
TasI	AATT	3 cut(s)	348, 468, 571
TatI	WGTACW	2 cut(s)	3, 279
TauI	GCSGC	1 cut(s)	40
TfiI	GAWTC	4 cut(s)	452, 499, 653, 1141
Tru1I	TTAA	3 cut(s)	93, 413, 471
Tru9I	TTAA	3 cut(s)	93, 413, 471
TscAI	CASTG	3 cut(s)	84, 604, 707
TseFI	GTSAC	1 cut(s)	866
TseI	GCWGC	3 cut(s)	220, 511, 978
Tsp45I	GTSAC	1 cut(s)	866
TspDTI	ATGAA	7 cut(s)	295, 320, 425, 628, 822, 890, 1067
TspRI	CASTG	3 cut(s)	84, 604, 707
VpaK11BI	GGWCC	2 cut(s)	406, 1037
VspI	ATTAAT	1 cut(s)	471
XcmI	CCANNNNNNNNNTGG	1 cut(s)	400
XspI	CTAG	1 cut(s)	665
Zsp2I	ATGCAT	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.