Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005128

Physical Location & Seq

Genomic Coordinates Forward (+)

47492898 .. 47497705

Gene Structure 4808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00253460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2406 bp

ATGCTCCCGCACTCGTACACCGTCGATTCCCTCTCCAAATCCCAAGACCTCGCCAGCACCATCCTCGCCTCCTCCGCGCCGCACCAGATCTCCTCCGCCTGCGACTCCGTCCACTCCTTCCTCCACTCCCTCCCTCCCGACCACGCCCGCCACTTCTTCTCCCTCACCTTCCCCACCCTCATCTGCAAGCTCTTCGGCTTCGACGACGCCACGTCATCATCATCTTCATCCTCTTCCTCTCCCTCTCCCTCTCCCTCATCCTCATCTCCCTCCCACGGCTGGATCGACACCGTCCTCGCCTCAAACGACGTCGAATTGGCCAACAAGCTCTTCTCCCTCCTCGCCCCGACCGGCCTCCTCTTCACCTCGATCTCCGCCGTCGATCGCCTCTCCCTCGTCAAGTACGTCTTCCCCATCGAACGGCTCCCGGAATGGGTGCGGTTCATGCTCTCCTCGGAGAAAGATAGCCGGGCGCTCTCCGATTTAGCTCCGCTTTTCAAGAACAGGATTAAAGAAGATTCGATTCAGCCTAATTTCCATCAGGTTCAGCTCAATGTGTTTGAATATTACATCTTCTGGTTCGCTTATTATCCTGTTTGCCGCGGAAATGGTGAGAATTGCGATACTGTTTCGGTTAGGAGGAGCAAAAGATTTAAATTTGAGAACTGGGTTTCGTCAATTTCGGGGTTTTCGAGCCCTAGGCGTGGTGGCTCGGAGCTTAAGATCGAGTGTAATCTTTATATCAGGCTTTTATATGCTTATCTTAATGCATTTGTGGCTGTGACTGATTTGAATTCGCACCTGCCGTACCGGAGTTCGCTTTTGCAGTACTCTGCCGGGTATGATAGCTCGGCCATAGTGAAGGGGGAGTTTTTGGTTAATGCGTTGGTCAATTTTTGGTTACTTGATAATGATTTTTCGCCACTATCTGCCGATTTGTGCAAGTCTTTTGGAGTTAAGTTTCCGTTGCGGTCGGTTTTAGGAGAGACCCCGCCAACGCCTGGATTAGGAGAGGTGGTGAAGTTGCTTGTCAAGTACTTGAATTTGGGTTTGGTGGTGCACCAGAATGGGACGGATAATGTGGAGTATGGTGCGAGTCCGAGGTGGAGAATGTCTGGTTCATTTGATGTTGGGAAGCCAATGGATGTAATGGCAGTGTCTCCCGGTGTGCTTCCAAATGGGTCTTGGAACTTGCTGATACAGAGGCCTTTGTACAGGTTTATATTGAGGACATTCTTGTTCTGCCCTGTGGGAGCTTCAATTAAGAACATTTCACAAGTTTTTTCTGTTTGGGTTACTTACTTGGAACCTTGGGCTATCAGTTTGGATGACTTTGGGGATCTTGATGCTATTGTTGATGGATCAAATAAGAATGGTAGAAAGGATCACTCGCAGTCTGAAGCCTGTGGTTACTCACCTTCTTGGGAGGCTTATGTGTTGGCGAATTACTTGTACTACAGTTCCTTGGTTATGCATTTTATTGGGTTTGCACACAAGTTTCTTCACACTGATGCAGAAATAATAGTCCAGATGGTATCGAAGGTTCTAACTATATTGACATCATCCAAAGATCTACTTGATCTTATAAAGACGATGGATATTGCTTTTCACTCCAAACAAGCAGGATCAGGCAAATCGAGGCTTAATAGCTTATATAGATTTGTGACTCCAATTTGTGAGCAGTTGAAGGACTGGGAAGATGGCTTATGTGAAAGTGATGCTGATGGGTCTTTCTTGCATGATAATTGGAACAAAGATTTACGTCTGTTTAGTGATGGAGAAGATGGTGGGCGACAACTGCTTCAGTTGTTCATATTACGTGCAGAAGCCGAGTTGCAAGCAATTTCTGGTGATAACCTTGCTGAAAACCTTCAGTGCATAGACTCTTTAAAAGATCAGGTGGCCTGCTTGTTTGGTAGTGATGCTGTAAGGAAACTATCATTTTCCCCAGAAGCAAAACAGCCCGCTCAACCCCGTGATGAAATTTTCAAACCCAGGAGAGTTGGCAACTATGCTTTGTCTGATATCAAATACAAGGGTGACTGGATGAAGCGTCCCATCTCTGATGATGAGGTTGCATGGCTTGCGAAACTGCTTGTCCTGTTTTCTTGCTGGCTAAATGAGATTCTCGGACTAAATCAGACTGAAAGCAACCAAGTGGGTTCAACACATTCGTACGTTAAGGTACCTTCAAGTGATGTTTCAGGCATTAAGGCAGTGTTGGGTGCTGTTGGCTCATGGATTCTCATGTTGGGTGTGGGGGTGGTAAGGCTTGTGAGAAAACGTGGTCTGAGAGTGAACCTCAGGATGTTGGCCTCAAAGAAGGTTGTAATGATCTTGCTCTTGTTTGTTGTATATAGTGTATTAAAGAGCTTCTGGACTGTTTCATATGGTAGAGTAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

mit_SMPDase

Protein Analysis

801

Amino Acids

89.27

Weight (kDa)

6.98

Isoelectric Point (pI)

44.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47400
fragaria_vesca	FvH4_5g19410 FvH4_5g19410 FvH4_5g19410 FvH4_5g19410 FvH4_5g19410 FvH4_5g19410 FvH4_5g19410 FvH4_5g19410 FvH4_5g19410 FvH4_5g19410 FvH4_5g19410 FvH4_5g19410
malus_domestica	MD04G1060300.v1.1 MD06G1053300.v1.1
prunus_persica	Prupe.5G065400_v2.0.a1
pyrus_communis	pycom04g05390 pycom06g04500
rosa_chinensis	RchiOBHm_Chr7g0203921
rosa_laevigata	RLG00000003498
rosa_multiflora	Rmu_co8411937.1_g000001 Rmu_sc0013871.1_g000002 Rmu_sc0032022.1_g000002
rosa_roxburghii	Rroxscaffold_3G00253460
rosa_rugosa	Rorug07G0079400
rosa_samantha	Rh7AG209300 Rh7BG208100 Rh7CG221700 Rh7DG216400
rosa_wichuraiana	Rw7G018240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1586
AarI	CACCTGC	1 cut(s)	810
AatII	GACGTC	1 cut(s)	312
Acc36I	ACCTGC	1 cut(s)	810
Acc65I	GGTACC	1 cut(s)	2185
AccB1I	GGYRCC	1 cut(s)	2185
AccB7I	CCANNNNNTGG	1 cut(s)	1001
AccBSI	CCGCTC	1 cut(s)	1967
AccII	CGCG	2 cut(s)	77, 603
AclWI	GGATC	5 cut(s)	290, 1347, 1369, 1392, 1633
AcoI	YGGCCR	2 cut(s)	318, 852
AcsI	RAATTY	4 cut(s)	656, 793, 1042, 1983
AcuI	CTGAAG	3 cut(s)	1419, 1787, 1856
AcyI	GRCGYC	2 cut(s)	207, 309
AfaI	GTAC	9 cut(s)	17, 404, 809, 830, 1037, 1214, 1454, 2177, 2187
AfiI	CCNNNNNNNGG	7 cut(s)	275, 279, 420, 433, 704, 1001, 1007
AflII	CTTAAG	1 cut(s)	719
AgsI	TTSAA	9 cut(s)	499, 563, 793, 1042, 1260, 1687, 1990, 2166, 2193
AhdI	GACNNNNNGTC	1 cut(s)	211
AjiI	CACGTC	1 cut(s)	213
AjnI	CCWGG	2 cut(s)	1000, 1994
AjuI	GAANNNNNNNTTGG	4 cut(s)	314, 346, 1034, 1066
AluBI	AGCT	9 cut(s)	190, 328, 488, 550, 718, 849, 1256, 1650, 2373
AluI	AGCT	9 cut(s)	190, 328, 488, 550, 718, 849, 1256, 1650, 2373
Alw21I	GWGCWC	1 cut(s)	1062
Alw26I	GTCTC	2 cut(s)	980, 1164
Alw44I	GTGCAC	1 cut(s)	1058
AlwI	GGATC	5 cut(s)	290, 1347, 1369, 1392, 1633
AoxI	GGCC	6 cut(s)	318, 352, 852, 1205, 1902, 2313
ApaLI	GTGCAC	1 cut(s)	1058
ApoI	RAATTY	4 cut(s)	656, 793, 1042, 1983
Asp700I	GAANNNNTTC	1 cut(s)	1869
Asp718I	GGTACC	1 cut(s)	2185
AspA2I	CCTAGG	1 cut(s)	698
AspLEI	GCGC	2 cut(s)	79, 475
AsuC2I	CCSGG	4 cut(s)	428, 470, 838, 1164
AsuHPI	GGTGA	7 cut(s)	157, 355, 623, 1030, 1407, 1862, 2051
AvrII	CCTAGG	1 cut(s)	698
AxyI	CCTNAGG	1 cut(s)	2303
BaeGI	GKGCMC	1 cut(s)	1062
BalI	TGGCCA	1 cut(s)	320
BanI	GGYRCC	1 cut(s)	2185
BanII	GRGCYC	1 cut(s)	698
BbsI	GAAGAC	1 cut(s)	400
Bbv12I	GWGCWC	1 cut(s)	1062
BceAI	ACGGC	4 cut(s)	292, 362, 437, 790
BcgI	CGANNNNNNTGC	4 cut(s)	46, 80, 175, 209
BciT130I	CCWGG	2 cut(s)	1002, 1996
BcnI	CCSGG	4 cut(s)	428, 470, 838, 1164
BcoDI	GTCTC	2 cut(s)	980, 1164
BfaI	CTAG	1 cut(s)	699
BfmI	CTRYAG	1 cut(s)	1456
BfoI	RGCGCY	1 cut(s)	476
BfrI	CTTAAG	1 cut(s)	719
BfuAI	ACCTGC	1 cut(s)	810
BglII	AGATCT	2 cut(s)	87, 1570
BisI	GCNGC	2 cut(s)	80, 601
BlnI	CCTAGG	1 cut(s)	698
BlsI	GCNGC	2 cut(s)	81, 602
BmcAI	AGTACT	2 cut(s)	830, 1037
Bme1390I	CCNGG	6 cut(s)	428, 470, 838, 1002, 1164, 1996
BmeRI	GACNNNNNGTC	1 cut(s)	211
BmgBI	CACGTC	1 cut(s)	213
BmiI	GGNNCC	3 cut(s)	425, 1308, 2187
BmrFI	CCNGG	6 cut(s)	428, 470, 838, 1002, 1164, 1996
BmrI	ACTGGG	2 cut(s)	676, 1702
BmsI	GCATC	4 cut(s)	1336, 1501, 1708, 1912
BmuI	ACTGGG	2 cut(s)	676, 1702
BpiI	GAAGAC	1 cut(s)	400
BplI	GAGNNNNNCTC	2 cut(s)	2286, 2318
BpuMI	CCSGG	4 cut(s)	428, 470, 838, 1164
BsaAI	YACGTR	1 cut(s)	1820
BsaHI	GRCGYC	2 cut(s)	207, 309
BsaI	GGTCTC	1 cut(s)	980
BsaJI	CCNNGG	8 cut(s)	274, 453, 601, 698, 1100, 1310, 1464, 1994
BsaWI	WCCGGW	1 cut(s)	810
BsaXI	ACNNNNNCTCC	6 cut(s)	74, 104, 143, 173, 1002, 1032
Bsc4I	CCNNNNNNNGG	7 cut(s)	275, 279, 420, 433, 704, 1001, 1007
Bse118I	RCCGGY	1 cut(s)	350
Bse1I	ACTGG	3 cut(s)	671, 1697, 2048
Bse21I	CCTNAGG	1 cut(s)	2303
BseBI	CCWGG	2 cut(s)	1002, 1996
BseDI	CCNNGG	8 cut(s)	274, 453, 601, 698, 1100, 1310, 1464, 1994
BseGI	GGATG	8 cut(s)	60, 227, 257, 1150, 1333, 1562, 2052, 2313
BseLI	CCNNNNNNNGG	7 cut(s)	275, 279, 420, 433, 704, 1001, 1007
BseMII	CTCAG	2 cut(s)	2282, 2317
BseNI	ACTGG	3 cut(s)	671, 1697, 2048
BseRI	GAGGAG	6 cut(s)	61, 82, 329, 347, 442, 655
BseSI	GKGCMC	1 cut(s)	1062
BsgI	GTGCAG	1 cut(s)	1842
Bsh1236I	CGCG	2 cut(s)	77, 603
Bsh1285I	CGRYCG	3 cut(s)	351, 385, 974
BshFI	GGCC	6 cut(s)	320, 354, 854, 1207, 1904, 2315
BshNI	GGYRCC	1 cut(s)	2185
BsiEI	CGRYCG	3 cut(s)	351, 385, 974
BsiHKAI	GWGCWC	1 cut(s)	1062
BsiSI	CCGG	6 cut(s)	351, 428, 469, 811, 837, 1164
BsiWI	CGTACG	1 cut(s)	2175
BslFI	GGGAC	2 cut(s)	1084, 2040
BslI	CCNNNNNNNGG	7 cut(s)	275, 279, 420, 433, 704, 1001, 1007
BsmAI	GTCTC	2 cut(s)	980, 1164
BsmFI	GGGAC	2 cut(s)	1084, 2040
BsnI	GGCC	6 cut(s)	320, 354, 854, 1207, 1904, 2315
Bso31I	GGTCTC	1 cut(s)	980
Bsp1286I	GDGCHC	2 cut(s)	698, 1062
Bsp1407I	TGTACA	1 cut(s)	1212
BspANI	GGCC	6 cut(s)	320, 354, 854, 1207, 1904, 2315
BspCNI	CTCAG	2 cut(s)	2283, 2316
BspFNI	CGCG	2 cut(s)	77, 603
BspLI	GGNNCC	3 cut(s)	425, 1308, 2187
BspMI	ACCTGC	1 cut(s)	810
BspPI	GGATC	5 cut(s)	290, 1347, 1369, 1392, 1633
BspQI	GCTCTTC	2 cut(s)	197, 335
BspT107I	GGYRCC	1 cut(s)	2185
BspTI	CTTAAG	1 cut(s)	719
BspTNI	GGTCTC	1 cut(s)	980
BsrBI	CCGCTC	1 cut(s)	1967
BsrFI	RCCGGY	1 cut(s)	350
BsrGI	TGTACA	1 cut(s)	1212
BsrI	ACTGG	3 cut(s)	671, 1697, 2048
BssAI	RCCGGY	1 cut(s)	350
BssECI	CCNNGG	8 cut(s)	274, 453, 601, 698, 1100, 1310, 1464, 1994
BssNI	GRCGYC	2 cut(s)	207, 309
BssT1I	CCWWGG	3 cut(s)	698, 1310, 1464
Bst2UI	CCWGG	2 cut(s)	1002, 1996
Bst4CI	ACNGT	5 cut(s)	22, 292, 628, 1460, 2383
Bst6I	CTCTTC	4 cut(s)	197, 238, 335, 365
BstACI	GRCGYC	2 cut(s)	207, 309
BstAFI	CTTAAG	1 cut(s)	719
BstAPI	GCANNNNNTGC	1 cut(s)	2084
BstAUI	TGTACA	1 cut(s)	1212
BstBAI	YACGTR	1 cut(s)	1820
BstC8I	GCNNGC	9 cut(s)	55, 100, 148, 188, 1839, 1906, 1965, 2085, 2114
BstDEI	CTNAG	2 cut(s)	2291, 2303
BstDSI	CCRYGG	2 cut(s)	274, 601
BstENI	CCTNNNNNAGG	1 cut(s)	1005
BstF5I	GGATG	8 cut(s)	60, 227, 257, 1150, 1333, 1562, 2052, 2313
BstFNI	CGCG	2 cut(s)	77, 603
BstH2I	RGCGCY	1 cut(s)	476
BstHHI	GCGC	2 cut(s)	79, 475
BstMAI	GTCTC	2 cut(s)	980, 1164
BstMCI	CGRYCG	3 cut(s)	351, 385, 974
BstMWI	GCNNNNNNNGC	5 cut(s)	74, 445, 776, 1798, 2084
BstNI	CCWGG	2 cut(s)	1002, 1996
BstSCI	CCNGG	6 cut(s)	426, 468, 836, 1000, 1162, 1994
BstSFI	CTRYAG	1 cut(s)	1456
BstSLI	GKGCMC	1 cut(s)	1062
BstUI	CGCG	2 cut(s)	77, 603
BstV2I	GAAGAC	1 cut(s)	400
BstX2I	RGATCY	3 cut(s)	87, 1339, 1570
BstYI	RGATCY	3 cut(s)	87, 1339, 1570
Bsu36I	CCTNAGG	1 cut(s)	2303
BsuRI	GGCC	6 cut(s)	320, 354, 854, 1207, 1904, 2315
BtgI	CCRYGG	2 cut(s)	274, 601
BtrI	CACGTC	1 cut(s)	213
BtsCI	GGATG	8 cut(s)	60, 227, 257, 1150, 1333, 1562, 2052, 2313
BtsI	GCAGTG	2 cut(s)	1161, 2223
BtsIMutI	CAGTG	4 cut(s)	1161, 1506, 1880, 2223
BveI	ACCTGC	1 cut(s)	810
Cac8I	GCNNGC	9 cut(s)	55, 100, 148, 188, 1839, 1906, 1965, 2085, 2114
CfoI	GCGC	2 cut(s)	79, 475
Cfr10I	RCCGGY	1 cut(s)	350
Cfr42I	CCGCGG	1 cut(s)	604
CseI	GACGC	2 cut(s)	215, 2042
Csp6I	GTAC	9 cut(s)	16, 403, 808, 829, 1036, 1213, 1453, 2176, 2186
CviAII	CATG	5 cut(s)	445, 1739, 2079, 2238, 2248
CviQI	GTAC	9 cut(s)	16, 403, 808, 829, 1036, 1213, 1453, 2176, 2186
DdeI	CTNAG	2 cut(s)	2291, 2303
DraI	TTTAAA	2 cut(s)	655, 1890
DriI	GACNNNNNGTC	1 cut(s)	211
EaeI	YGGCCR	2 cut(s)	318, 852
Eam1104I	CTCTTC	4 cut(s)	197, 238, 335, 365
Eam1105I	GACNNNNNGTC	1 cut(s)	211
EarI	CTCTTC	4 cut(s)	197, 238, 335, 365
EciI	GGCGGA	2 cut(s)	85, 364
Eco130I	CCWWGG	3 cut(s)	698, 1310, 1464
Eco147I	AGGCCT	1 cut(s)	1207
Eco24I	GRGCYC	1 cut(s)	698
Eco31I	GGTCTC	1 cut(s)	980
Eco32I	GATATC	1 cut(s)	2026
Eco57I	CTGAAG	3 cut(s)	1419, 1787, 1856
Eco81I	CCTNAGG	1 cut(s)	2303
EcoNI	CCTNNNNNAGG	1 cut(s)	1005
EcoRI	GAATTC	1 cut(s)	793
EcoRII	CCWGG	2 cut(s)	1000, 1994
EcoRV	GATATC	1 cut(s)	2026
EcoT14I	CCWWGG	3 cut(s)	698, 1310, 1464
EcoT22I	ATGCAT	2 cut(s)	772, 1476
EcoT38I	GRGCYC	1 cut(s)	698
ErhI	CCWWGG	3 cut(s)	698, 1310, 1464
FaeI	CATG	5 cut(s)	448, 1742, 2082, 2241, 2251
FalI	AAGNNNNNCTT	4 cut(s)	392, 424, 1560, 1592
FaqI	GGGAC	2 cut(s)	1084, 2040
FatI	CATG	5 cut(s)	444, 1738, 2078, 2237, 2247
FauI	CCCGC	4 cut(s)	15, 155, 999, 1972
FauNDI	CATATG	1 cut(s)	2389
Fnu4HI	GCNGC	2 cut(s)	80, 601
FokI	GGATG	8 cut(s)	47, 214, 244, 1157, 1340, 1549, 2059, 2320
FriOI	GRGCYC	1 cut(s)	698
Fsp4HI	GCNGC	2 cut(s)	80, 601
FspBI	CTAG	1 cut(s)	699
GlaI	GCGC	2 cut(s)	78, 474
GluI	GCNGC	2 cut(s)	80, 601
HaeII	RGCGCY	1 cut(s)	476
HaeIII	GGCC	6 cut(s)	320, 354, 854, 1207, 1904, 2315
HapII	CCGG	6 cut(s)	351, 428, 469, 811, 837, 1164
HgaI	GACGC	2 cut(s)	215, 2042
HhaI	GCGC	2 cut(s)	79, 475
Hin1I	GRCGYC	2 cut(s)	207, 309
Hin1II	CATG	5 cut(s)	448, 1742, 2082, 2241, 2251
Hin6I	GCGC	2 cut(s)	77, 473
HinP1I	GCGC	2 cut(s)	77, 473
HinfI	GANTC	9 cut(s)	26, 104, 518, 523, 1096, 1666, 1883, 2125, 2242
HpaII	CCGG	6 cut(s)	351, 428, 469, 811, 837, 1164
HphI	GGTGA	7 cut(s)	157, 355, 623, 1030, 1407, 1862, 2051
Hpy166II	GTNNAC	4 cut(s)	18, 112, 1060, 2299
Hpy188III	TCNNGA	6 cut(s)	137, 499, 1343, 1528, 2305, 2377
Hpy8I	GTNNAC	4 cut(s)	18, 112, 1060, 2299
Hpy99I	CGWCG	6 cut(s)	26, 206, 209, 311, 314, 383
HpyAV	CCTTC	9 cut(s)	127, 178, 856, 1428, 1534, 1681, 1880, 2199, 2317
HpyCH4III	ACNGT	5 cut(s)	22, 292, 628, 1460, 2383
HpyCH4IV	ACGT	7 cut(s)	212, 309, 405, 1762, 1819, 2178, 2284
HpyF10VI	GCNNNNNNNGC	5 cut(s)	74, 445, 776, 1798, 2084
HpyF3I	CTNAG	2 cut(s)	2291, 2303
HpySE526I	ACGT	7 cut(s)	212, 309, 405, 1762, 1819, 2178, 2284
Hsp92I	GRCGYC	2 cut(s)	207, 309
Hsp92II	CATG	5 cut(s)	448, 1742, 2082, 2241, 2251
HspAI	GCGC	2 cut(s)	77, 473
KpnI	GGTACC	1 cut(s)	2189
KspI	CCGCGG	1 cut(s)	604
LguI	GCTCTTC	2 cut(s)	197, 335
LmnI	GCTCC	6 cut(s)	9, 429, 493, 642, 715, 1253
LweI	GCATC	4 cut(s)	1336, 1501, 1708, 1912
MaeI	CTAG	1 cut(s)	699
MaeII	ACGT	7 cut(s)	212, 309, 405, 1762, 1819, 2178, 2284
MaeIII	GTNAC	6 cut(s)	781, 900, 1294, 1409, 1663, 2039
MbiI	CCGCTC	1 cut(s)	1967
MflI	RGATCY	3 cut(s)	87, 1339, 1570
MhlI	GDGCHC	2 cut(s)	698, 1062
MlsI	TGGCCA	1 cut(s)	320
MluNI	TGGCCA	1 cut(s)	320
MlyI	GAGTC	4 cut(s)	98, 1105, 1660, 1877
Mox20I	TGGCCA	1 cut(s)	320
Mph1103I	ATGCAT	2 cut(s)	772, 1476
MroXI	GAANNNNTTC	1 cut(s)	1869
MscI	TGGCCA	1 cut(s)	320
MslI	CAYNNNNRTG	2 cut(s)	1065, 1509
Msp20I	TGGCCA	1 cut(s)	320
MspA1I	CMGCKG	1 cut(s)	603
MspCI	CTTAAG	1 cut(s)	719
MspI	CCGG	6 cut(s)	351, 428, 469, 811, 837, 1164
MspR9I	CCNGG	6 cut(s)	428, 470, 838, 1002, 1164, 1996
MvaI	CCWGG	2 cut(s)	1002, 1996
MvnI	CGCG	2 cut(s)	77, 603
MwoI	GCNNNNNNNGC	5 cut(s)	74, 445, 776, 1798, 2084
NciI	CCSGG	4 cut(s)	428, 470, 838, 1164
NdeI	CATATG	1 cut(s)	2389
NlaIII	CATG	5 cut(s)	448, 1742, 2082, 2241, 2251
NlaIV	GGNNCC	3 cut(s)	425, 1308, 2187
NmeAIII	GCCGAG	2 cut(s)	830, 1855
NmuCI	GTSAC	3 cut(s)	781, 1663, 2039
NsiI	ATGCAT	2 cut(s)	772, 1476
PaqCI	CACCTGC	1 cut(s)	810
PceI	AGGCCT	1 cut(s)	1207
PciSI	GCTCTTC	2 cut(s)	197, 335
PcsI	WCGNNNNNNNCGW	6 cut(s)	201, 282, 303, 402, 689, 803
PdmI	GAANNNNTTC	1 cut(s)	1869
PfeI	GAWTC	5 cut(s)	26, 518, 523, 2125, 2242
Pfl23II	CGTACG	1 cut(s)	2175
PflFI	GACNNNGTC	2 cut(s)	107, 290
PflMI	CCANNNNNTGG	1 cut(s)	1001
PfoI	TCCNGGA	1 cut(s)	426
PkrI	GCNGC	2 cut(s)	81, 602
Ple19I	CGATCG	1 cut(s)	385
PleI	GAGTC	4 cut(s)	98, 1104, 1660, 1877
PpsI	GAGTC	4 cut(s)	98, 1104, 1660, 1877
Ppu21I	YACGTR	1 cut(s)	1820
PsiI	TTATAA	1 cut(s)	1586
Psp6I	CCWGG	2 cut(s)	1000, 1994
PspGI	CCWGG	2 cut(s)	1000, 1994
PspLI	CGTACG	1 cut(s)	2175
PspN4I	GGNNCC	3 cut(s)	425, 1308, 2187
PsrI	GAACNNNNNNTAC	2 cut(s)	1527, 1559
PsuI	RGATCY	3 cut(s)	87, 1339, 1570
PsyI	GACNNNGTC	2 cut(s)	107, 290
PvuI	CGATCG	1 cut(s)	385
RsaI	GTAC	9 cut(s)	17, 404, 809, 830, 1037, 1214, 1454, 2177, 2187
RsaNI	GTAC	9 cut(s)	16, 403, 808, 829, 1036, 1213, 1453, 2176, 2186
RseI	CAYNNNNRTG	2 cut(s)	1065, 1509
SacII	CCGCGG	1 cut(s)	604
SapI	GCTCTTC	2 cut(s)	197, 335
SatI	GCNGC	2 cut(s)	80, 601
ScaI	AGTACT	2 cut(s)	830, 1037
SchI	GAGTC	4 cut(s)	98, 1105, 1660, 1877
ScrFI	CCNGG	6 cut(s)	428, 470, 838, 1002, 1164, 1996
SduI	GDGCHC	2 cut(s)	698, 1062
SfaNI	GCATC	4 cut(s)	1336, 1501, 1708, 1912
SfcI	CTRYAG	1 cut(s)	1456
Sfr303I	CCGCGG	1 cut(s)	604
SgrBI	CCGCGG	1 cut(s)	604
SmiI	ATTTAAAT	1 cut(s)	655
SmiMI	CAYNNNNRTG	2 cut(s)	1065, 1509
SmlI	CTYRAG	1 cut(s)	719
SmoI	CTYRAG	1 cut(s)	719
SseBI	AGGCCT	1 cut(s)	1207
SspI	AATATT	1 cut(s)	566
SspMI	CTAG	1 cut(s)	699
StuI	AGGCCT	1 cut(s)	1207
StyD4I	CCNGG	6 cut(s)	426, 468, 836, 1000, 1162, 1994
StyI	CCWWGG	3 cut(s)	698, 1310, 1464
SwaI	ATTTAAAT	1 cut(s)	655
TaaI	ACNGT	5 cut(s)	22, 292, 628, 1460, 2383
TaiI	ACGT	7 cut(s)	215, 312, 408, 1765, 1822, 2181, 2287
TatI	WGTACW	4 cut(s)	828, 1035, 1212, 1452
TauI	GCSGC	2 cut(s)	82, 603
TfiI	GAWTC	5 cut(s)	26, 518, 523, 2125, 2242
TscAI	CASTG	4 cut(s)	1161, 1513, 1880, 2223
TseFI	GTSAC	3 cut(s)	781, 1663, 2039
Tsp45I	GTSAC	3 cut(s)	781, 1663, 2039
TspDTI	ATGAA	7 cut(s)	216, 433, 1110, 1801, 1995, 2063, 2376
TspGWI	ACGGA	3 cut(s)	97, 954, 1088
TspRI	CASTG	4 cut(s)	1161, 1513, 1880, 2223
Tth111I	GACNNNGTC	2 cut(s)	107, 290
Van91I	CCANNNNNTGG	1 cut(s)	1001
Vha464I	CTTAAG	1 cut(s)	719
VneI	GTGCAC	1 cut(s)	1058
XagI	CCTNNNNNAGG	1 cut(s)	1005
XapI	RAATTY	4 cut(s)	656, 793, 1042, 1983
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1182
XmaJI	CCTAGG	1 cut(s)	698
XmnI	GAANNNNTTC	1 cut(s)	1869
XspI	CTAG	1 cut(s)	699
ZraI	GACGTC	1 cut(s)	310
ZrmI	AGTACT	2 cut(s)	830, 1037
Zsp2I	ATGCAT	2 cut(s)	772, 1476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.