Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8411937.1

Orthogroup ID

OG0005128

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1080

Gene Structure 1080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8411937.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

gactgggaagatggcttatgtgaaagtgatgctgatgggtctttcttgcatgataattggaacaaagatttacgtctgtttagtgatggagaagatggtgggcgacaactgcttcagttgttcatattacgtgcagaagccgagttgcaagcaatttctggtgataaccttgctgaaaaccttcagtgcatagactctttaaaagatcaggtggcctgcttgtttggcagtgatgctgtaaggaaactatcattttccccagaagcaaaacagcccgctcaaccccgtgatgaaattttcaaacccaggagagttggcaactatgctttgtctgatatcaaatacaagggtgactggatgaagcgtcccatctctgatgatgaggttgcatggcttgcgaaactgcttgtcctgttttcttgctggctaaatgagattctcggactaaatcagactgaaagcaaccaagtgggttcaacacattcttacgttaaggtaccttcaagtgatgttttgggcattaaggcagtgttgggtgctgttggctcttggattctgatgttgggtgtgggggtggtaaggcttgtgagaaaacgtggtctgagagtgaacctcaggatgttggcctcaaagaaggttgtaatgatcttgatcttgtctgttgtatatagtgtattaaagagcttttggactgtttcatatggtagagtagggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

mit_SMPDase

Protein Analysis

238

Amino Acids

26.52

Weight (kDa)

6.93

Isoelectric Point (pI)

40.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47400
fragaria_vesca	FvH4_5g19410 FvH4_5g19410 FvH4_5g19410 FvH4_5g19410 FvH4_5g19410 FvH4_5g19410 FvH4_5g19410 FvH4_5g19410 FvH4_5g19410 FvH4_5g19410 FvH4_5g19410 FvH4_5g19410
malus_domestica	MD04G1060300.v1.1 MD06G1053300.v1.1
prunus_persica	Prupe.5G065400_v2.0.a1
pyrus_communis	pycom04g05390 pycom06g04500
rosa_chinensis	RchiOBHm_Chr7g0203921
rosa_laevigata	RLG00000003498
rosa_multiflora	Rmu_co8411937.1_g000001 Rmu_sc0013871.1_g000002 Rmu_sc0032022.1_g000002
rosa_roxburghii	Rroxscaffold_3G00253460
rosa_rugosa	Rorug07G0079400
rosa_samantha	Rh7AG209300 Rh7BG208100 Rh7CG221700 Rh7DG216400
rosa_wichuraiana	Rw7G018240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	496
AccB1I	GGYRCC	1 cut(s)	496
AccBSI	CCGCTC	1 cut(s)	278
AciI	CCGC	1 cut(s)	276
AcsI	RAATTY	1 cut(s)	294
AcuI	CTGAAG	2 cut(s)	98, 167
AfaI	GTAC	1 cut(s)	498
AgsI	TTSAA	3 cut(s)	301, 477, 504
AjnI	CCWGG	1 cut(s)	305
AluBI	AGCT	1 cut(s)	684
AluI	AGCT	1 cut(s)	684
AoxI	GGCC	2 cut(s)	213, 624
ApoI	RAATTY	1 cut(s)	294
Asp700I	GAANNNNTTC	1 cut(s)	180
Asp718I	GGTACC	1 cut(s)	496
AsuHPI	GGTGA	2 cut(s)	173, 362
AxyI	CCTNAGG	1 cut(s)	614
BanI	GGYRCC	1 cut(s)	496
BccI	CCATC	5 cut(s)	5, 29, 80, 89, 377
BciT130I	CCWGG	1 cut(s)	307
Bme1390I	CCNGG	1 cut(s)	307
BmiI	GGNNCC	1 cut(s)	498
BmrFI	CCNGG	1 cut(s)	307
BmrI	ACTGGG	1 cut(s)	13
BmsI	GCATC	2 cut(s)	19, 223
BmuI	ACTGGG	1 cut(s)	13
BplI	GAGNNNNNCTC	2 cut(s)	597, 629
BsaAI	YACGTR	1 cut(s)	131
BsaBI	GATNNNNATC	1 cut(s)	650
BsaJI	CCNNGG	1 cut(s)	305
Bse1I	ACTGG	2 cut(s)	8, 359
Bse21I	CCTNAGG	1 cut(s)	614
Bse8I	GATNNNNATC	1 cut(s)	650
BseBI	CCWGG	1 cut(s)	307
BseDI	CCNNGG	1 cut(s)	305
BseGI	GGATG	2 cut(s)	363, 624
BseJI	GATNNNNATC	1 cut(s)	650
BseMII	CTCAG	2 cut(s)	593, 628
BseNI	ACTGG	2 cut(s)	8, 359
BsgI	GTGCAG	1 cut(s)	153
BshFI	GGCC	2 cut(s)	215, 626
BshNI	GGYRCC	1 cut(s)	496
BslFI	GGGAC	1 cut(s)	351
BsmFI	GGGAC	1 cut(s)	351
BsnI	GGCC	2 cut(s)	215, 626
Bsp143I	GATC	3 cut(s)	205, 645, 651
BspACI	CCGC	1 cut(s)	276
BspANI	GGCC	2 cut(s)	215, 626
BspCNI	CTCAG	2 cut(s)	594, 627
BspLI	GGNNCC	1 cut(s)	498
BspT107I	GGYRCC	1 cut(s)	496
BsrBI	CCGCTC	1 cut(s)	278
BsrI	ACTGG	2 cut(s)	8, 359
BssECI	CCNNGG	1 cut(s)	305
BssMI	GATC	3 cut(s)	205, 645, 651
Bst2UI	CCWGG	1 cut(s)	307
Bst4CI	ACNGT	1 cut(s)	694
BstAPI	GCANNNNNTGC	1 cut(s)	395
BstBAI	YACGTR	1 cut(s)	131
BstC8I	GCNNGC	5 cut(s)	150, 217, 276, 396, 425
BstDEI	CTNAG	2 cut(s)	602, 614
BstF5I	GGATG	2 cut(s)	363, 624
BstKTI	GATC	3 cut(s)	208, 648, 654
BstMBI	GATC	3 cut(s)	205, 645, 651
BstMWI	GCNNNNNNNGC	3 cut(s)	109, 225, 395
BstNI	CCWGG	1 cut(s)	307
BstSCI	CCNGG	1 cut(s)	305
Bsu36I	CCTNAGG	1 cut(s)	614
BsuRI	GGCC	2 cut(s)	215, 626
BtsCI	GGATG	2 cut(s)	363, 624
BtsI	GCAGTG	2 cut(s)	235, 534
BtsIMutI	CAGTG	3 cut(s)	191, 235, 534
Cac8I	GCNNGC	5 cut(s)	150, 217, 276, 396, 425
CseI	GACGC	1 cut(s)	353
Csp6I	GTAC	1 cut(s)	497
CviAII	CATG	2 cut(s)	50, 390
CviQI	GTAC	1 cut(s)	497
DdeI	CTNAG	2 cut(s)	602, 614
DpnI	GATC	3 cut(s)	207, 647, 653
DpnII	GATC	3 cut(s)	205, 645, 651
DraI	TTTAAA	1 cut(s)	201
Eco32I	GATATC	1 cut(s)	337
Eco57I	CTGAAG	2 cut(s)	98, 167
Eco81I	CCTNAGG	1 cut(s)	614
EcoRII	CCWGG	1 cut(s)	305
EcoRV	GATATC	1 cut(s)	337
FaeI	CATG	2 cut(s)	53, 393
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	2 cut(s)	49, 389
FauI	CCCGC	1 cut(s)	283
FauNDI	CATATG	1 cut(s)	700
FokI	GGATG	2 cut(s)	370, 631
HaeIII	GGCC	2 cut(s)	215, 626
HgaI	GACGC	1 cut(s)	353
Hin1II	CATG	2 cut(s)	53, 393
HinfI	GANTC	3 cut(s)	194, 436, 553
HphI	GGTGA	2 cut(s)	173, 362
Hpy166II	GTNNAC	1 cut(s)	610
Hpy188I	TCNGA	6 cut(s)	334, 376, 443, 453, 558, 603
Hpy188III	TCNNGA	2 cut(s)	616, 649
Hpy8I	GTNNAC	1 cut(s)	610
HpyAV	CCTTC	3 cut(s)	191, 510, 628
HpyCH4III	ACNGT	1 cut(s)	694
HpyCH4IV	ACGT	4 cut(s)	73, 130, 489, 595
HpyCH4V	TGCA	5 cut(s)	49, 134, 148, 189, 389
HpyF10VI	GCNNNNNNNGC	3 cut(s)	109, 225, 395
HpyF3I	CTNAG	2 cut(s)	602, 614
HpySE526I	ACGT	4 cut(s)	73, 130, 489, 595
Hsp92II	CATG	2 cut(s)	53, 393
KpnI	GGTACC	1 cut(s)	500
Kzo9I	GATC	3 cut(s)	205, 645, 651
LweI	GCATC	2 cut(s)	19, 223
MaeII	ACGT	4 cut(s)	73, 130, 489, 595
MaeIII	GTNAC	1 cut(s)	350
MalI	GATC	3 cut(s)	207, 647, 653
MbiI	CCGCTC	1 cut(s)	278
MboI	GATC	3 cut(s)	205, 645, 651
MboII	GAAGA	2 cut(s)	20, 104
MluCI	AATT	3 cut(s)	55, 153, 294
MlyI	GAGTC	1 cut(s)	188
MnlI	CCTC	3 cut(s)	376, 623, 637
MroXI	GAANNNNTTC	1 cut(s)	180
MseI	TTAA	4 cut(s)	200, 492, 522, 677
MspR9I	CCNGG	1 cut(s)	307
MvaI	CCWGG	1 cut(s)	307
MwoI	GCNNNNNNNGC	3 cut(s)	109, 225, 395
NdeI	CATATG	1 cut(s)	700
NdeII	GATC	3 cut(s)	205, 645, 651
NlaIII	CATG	2 cut(s)	53, 393
NlaIV	GGNNCC	1 cut(s)	498
NmeAIII	GCCGAG	1 cut(s)	166
NmuCI	GTSAC	1 cut(s)	350
PdmI	GAANNNNTTC	1 cut(s)	180
PfeI	GAWTC	2 cut(s)	436, 553
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
Ppu21I	YACGTR	1 cut(s)	131
Psp6I	CCWGG	1 cut(s)	305
PspGI	CCWGG	1 cut(s)	305
PspN4I	GGNNCC	1 cut(s)	498
RsaI	GTAC	1 cut(s)	498
RsaNI	GTAC	1 cut(s)	497
SaqAI	TTAA	4 cut(s)	200, 492, 522, 677
Sau3AI	GATC	3 cut(s)	205, 645, 651
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	307
SfaNI	GCATC	2 cut(s)	19, 223
Sse9I	AATT	3 cut(s)	55, 153, 294
SsiI	CCGC	1 cut(s)	276
StyD4I	CCNGG	1 cut(s)	305
TaaI	ACNGT	1 cut(s)	694
TaiI	ACGT	4 cut(s)	76, 133, 492, 598
TasI	AATT	3 cut(s)	55, 153, 294
TfiI	GAWTC	2 cut(s)	436, 553
Tru1I	TTAA	4 cut(s)	200, 492, 522, 677
Tru9I	TTAA	4 cut(s)	200, 492, 522, 677
TscAI	CASTG	3 cut(s)	191, 235, 534
TseFI	GTSAC	1 cut(s)	350
Tsp45I	GTSAC	1 cut(s)	350
TspDTI	ATGAA	4 cut(s)	112, 306, 374, 687
TspRI	CASTG	3 cut(s)	191, 235, 534
XapI	RAATTY	1 cut(s)	294
XmnI	GAANNNNTTC	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.