Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005128

Physical Location & Seq

Genomic Coordinates Forward (+)

6190256 .. 6192456

Gene Structure 2201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0079400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGAAGTTGCAGCAAAAATGCTTCTGTTTCATTTGAAGATAGCTGCTTCGGGCAGAAATTTCGTGGCGGTTCCCCCGAGTTCTGAGAGAAGCTTAGAAAATATGCTGTTGAAGTTGGGTTCAGCTTTGTGTTTATTAGAAATGATTGGGATAGAATTCATGCGGTTTGTTCCAATTGGGGAACCGAAGGATGTGATTGGAATGTCTGTGACATGTATTGAAGAGGACATTAGCTATAACTTATCATTGAAGCCAAGGGAAATTATCAGCTTGTTCAAGTCAGCTTATGGGTTTGATATATCATACAAGGTTGCTTGGAAAGCAAAGCAGAAGGCTAGGGAAATGATTTATGGTTCTGAGGTTGATTCGTTTAACAAGTTAACATGGTATAGGGATGCTGTATTTGAGACTAACCTGGGATCTTCGTTTGTTTTGGAAGTTGATCCATCGAGCAATTGGTTTCAGAGGCTTTTCCTAACTTATGCAGGTTGTGTTAAAGGCTTTGAATTCTGTCTTCCCGTCTTGTTTGTCGATGGGACTTTTGGGAAGAGTGTCTACAAGGGGCAGATACTTTGTGCAACTGGAAAGAATGGAAATCATGATAAGCATTTTCATGTTGATTATTGCCAGAAGTGCTATGATTTTCCAATTTATCCAATTTCCAACGTTGATATGGCTTCTTCGGAATCTGCTAGCAGTGGCTTCATACTTCCTCCAAATGCAAAGAGGCCTCCTGGGAGGCCTAGGCTAAAGAGGTTCAAGTCTAGAGGAGAGTGTGAAAAGAAGCTCATTCGTTGCAGCCGATGTGGCAAAATGGGACAGCATAACAAGAAGACCTGCACTGAACCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

mit_SMPDase

Protein Analysis

284

Amino Acids

32.01

Weight (kDa)

9.02

Isoelectric Point (pI)

38.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47400
fragaria_vesca	FvH4_5g19410 FvH4_5g19410 FvH4_5g19410 FvH4_5g19410 FvH4_5g19410 FvH4_5g19410 FvH4_5g19410 FvH4_5g19410 FvH4_5g19410 FvH4_5g19410 FvH4_5g19410 FvH4_5g19410
malus_domestica	MD04G1060300.v1.1 MD06G1053300.v1.1
prunus_persica	Prupe.5G065400_v2.0.a1
pyrus_communis	pycom04g05390 pycom06g04500
rosa_chinensis	RchiOBHm_Chr7g0203921
rosa_laevigata	RLG00000003498
rosa_multiflora	Rmu_co8411937.1_g000001 Rmu_sc0013871.1_g000002 Rmu_sc0032022.1_g000002
rosa_roxburghii	Rroxscaffold_3G00253460
rosa_rugosa	Rorug07G0079400
rosa_samantha	Rh7AG209300 Rh7BG208100 Rh7CG221700 Rh7DG216400
rosa_wichuraiana	Rw7G018240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	476, 845
AccI	GTMKAC	1 cut(s)	555
AciI	CCGC	2 cut(s)	68, 163
AclI	AACGTT	1 cut(s)	666
AclWI	GGATC	2 cut(s)	427, 437
AcsI	RAATTY	3 cut(s)	58, 155, 506
AflIII	ACRYGT	1 cut(s)	212
AgsI	TTSAA	7 cut(s)	37, 112, 221, 250, 277, 506, 760
AjnI	CCWGG	2 cut(s)	414, 733
AluBI	AGCT	7 cut(s)	44, 93, 125, 234, 270, 284, 787
AluI	AGCT	7 cut(s)	44, 93, 125, 234, 270, 284, 787
Alw26I	GTCTC	1 cut(s)	401
AlwI	GGATC	2 cut(s)	427, 437
Ama87I	CYCGRG	1 cut(s)	76
AoxI	GGCC	2 cut(s)	728, 740
ApeKI	GCWGC	3 cut(s)	11, 44, 798
ApoI	RAATTY	3 cut(s)	58, 155, 506
AspA2I	CCTAGG	1 cut(s)	743
AsuNHI	GCTAGC	1 cut(s)	692
AvaI	CYCGRG	1 cut(s)	76
AvrII	CCTAGG	1 cut(s)	743
BarI	GAAGNNNNNNTAC	2 cut(s)	539, 571
BbsI	GAAGAC	2 cut(s)	506, 839
BbvI	GCAGC	3 cut(s)	23, 31, 810
BccI	CCATC	2 cut(s)	454, 527
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciT130I	CCWGG	2 cut(s)	416, 735
BcoDI	GTCTC	1 cut(s)	401
BfaI	CTAG	4 cut(s)	336, 693, 744, 765
BfuAI	ACCTGC	2 cut(s)	476, 845
BglI	GCCNNNNNGGC	1 cut(s)	807
BisI	GCNGC	3 cut(s)	12, 45, 799
BlnI	CCTAGG	1 cut(s)	743
BlsI	GCNGC	3 cut(s)	13, 46, 800
Bme1390I	CCNGG	2 cut(s)	416, 735
BmeT110I	CYCGRG	1 cut(s)	76
BmiI	GGNNCC	2 cut(s)	72, 183
BmrFI	CCNGG	2 cut(s)	416, 735
BmsI	GCATC	1 cut(s)	385
BmtI	GCTAGC	1 cut(s)	696
BpiI	GAAGAC	2 cut(s)	506, 839
BsaJI	CCNNGG	4 cut(s)	254, 415, 734, 743
Bse1I	ACTGG	1 cut(s)	586
BseBI	CCWGG	2 cut(s)	416, 735
BseDI	CCNNGG	4 cut(s)	254, 415, 734, 743
BseGI	GGATG	2 cut(s)	196, 400
BseMII	CTCAG	2 cut(s)	75, 348
BseNI	ACTGG	1 cut(s)	586
BseRI	GAGGAG	1 cut(s)	783
BseXI	GCAGC	3 cut(s)	23, 31, 810
BsgI	GTGCAG	1 cut(s)	823
BshFI	GGCC	2 cut(s)	730, 742
BsiHKCI	CYCGRG	1 cut(s)	76
BslFI	GGGAC	2 cut(s)	550, 831
BsmAI	GTCTC	1 cut(s)	401
BsmFI	GGGAC	2 cut(s)	550, 831
BsnI	GGCC	2 cut(s)	730, 742
BsoBI	CYCGRG	1 cut(s)	76
Bsp143I	GATC	2 cut(s)	419, 442
BspACI	CCGC	2 cut(s)	68, 163
BspANI	GGCC	2 cut(s)	730, 742
BspCNI	CTCAG	2 cut(s)	76, 349
BspHI	TCATGA	1 cut(s)	598
BspLI	GGNNCC	2 cut(s)	72, 183
BspMI	ACCTGC	2 cut(s)	476, 845
BspOI	GCTAGC	1 cut(s)	696
BspPI	GGATC	2 cut(s)	427, 437
BsrI	ACTGG	1 cut(s)	586
BssECI	CCNNGG	4 cut(s)	254, 415, 734, 743
BssMI	GATC	2 cut(s)	419, 442
BssT1I	CCWWGG	2 cut(s)	254, 743
Bst2UI	CCWGG	2 cut(s)	416, 735
Bst6I	CTCTTC	2 cut(s)	216, 542
BstC8I	GCNNGC	1 cut(s)	694
BstDEI	CTNAG	3 cut(s)	84, 94, 357
BstF5I	GGATG	2 cut(s)	196, 400
BstKTI	GATC	2 cut(s)	422, 445
BstMAI	GTCTC	1 cut(s)	401
BstMBI	GATC	2 cut(s)	419, 442
BstMWI	GCNNNNNNNGC	3 cut(s)	320, 633, 807
BstNI	CCWGG	2 cut(s)	416, 735
BstNSI	RCATGY	1 cut(s)	216
BstSCI	CCNGG	2 cut(s)	414, 733
BstV1I	GCAGC	3 cut(s)	23, 31, 810
BstV2I	GAAGAC	2 cut(s)	506, 839
BstX2I	RGATCY	1 cut(s)	419
BstYI	RGATCY	1 cut(s)	419
BsuRI	GGCC	2 cut(s)	730, 742
BtsCI	GGATG	2 cut(s)	196, 400
BtsI	GCAGTG	1 cut(s)	703
BtsIMutI	CAGTG	2 cut(s)	703, 840
BveI	ACCTGC	2 cut(s)	476, 845
Cac8I	GCNNGC	1 cut(s)	694
CciI	TCATGA	1 cut(s)	598
CviAII	CATG	5 cut(s)	160, 213, 384, 599, 614
DdeI	CTNAG	3 cut(s)	84, 94, 357
DpnI	GATC	2 cut(s)	421, 444
DpnII	GATC	2 cut(s)	419, 442
Eam1104I	CTCTTC	2 cut(s)	216, 542
EarI	CTCTTC	2 cut(s)	216, 542
Eco130I	CCWWGG	2 cut(s)	254, 743
Eco147I	AGGCCT	2 cut(s)	730, 742
Eco88I	CYCGRG	1 cut(s)	76
EcoRI	GAATTC	2 cut(s)	155, 506
EcoRII	CCWGG	2 cut(s)	414, 733
EcoT14I	CCWWGG	2 cut(s)	254, 743
ErhI	CCWWGG	2 cut(s)	254, 743
FaeI	CATG	5 cut(s)	163, 216, 387, 602, 617
FaqI	GGGAC	2 cut(s)	550, 831
FatI	CATG	5 cut(s)	159, 212, 383, 598, 613
FblI	GTMKAC	1 cut(s)	555
Fnu4HI	GCNGC	3 cut(s)	12, 45, 799
FokI	GGATG	2 cut(s)	203, 407
Fsp4HI	GCNGC	3 cut(s)	12, 45, 799
FspBI	CTAG	4 cut(s)	336, 693, 744, 765
GluI	GCNGC	3 cut(s)	12, 45, 799
HaeIII	GGCC	2 cut(s)	730, 742
Hin1II	CATG	5 cut(s)	163, 216, 387, 602, 617
HincII	GTYRAC	1 cut(s)	381
HindII	GTYRAC	1 cut(s)	381
HindIII	AAGCTT	1 cut(s)	91
HinfI	GANTC	2 cut(s)	365, 686
HpaI	GTTAAC	1 cut(s)	381
Hpy166II	GTNNAC	2 cut(s)	381, 556
Hpy188I	TCNGA	4 cut(s)	85, 358, 465, 685
Hpy188III	TCNNGA	2 cut(s)	599, 765
Hpy8I	GTNNAC	2 cut(s)	381, 556
HpyAV	CCTTC	2 cut(s)	181, 325
HpyCH4IV	ACGT	1 cut(s)	666
HpyCH4V	TGCA	6 cut(s)	11, 485, 578, 722, 798, 840
HpyF10VI	GCNNNNNNNGC	3 cut(s)	320, 633, 807
HpyF3I	CTNAG	3 cut(s)	84, 94, 357
HpySE526I	ACGT	1 cut(s)	666
Hsp92II	CATG	5 cut(s)	163, 216, 387, 602, 617
KspAI	GTTAAC	1 cut(s)	381
Kzo9I	GATC	2 cut(s)	419, 442
LpnPI	CCDG	8 cut(s)	401, 428, 471, 567, 641, 720, 747, 850
Lsp1109I	GCAGC	3 cut(s)	23, 31, 810
LweI	GCATC	1 cut(s)	385
MaeI	CTAG	4 cut(s)	336, 693, 744, 765
MaeII	ACGT	1 cut(s)	666
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	2 cut(s)	421, 444
MboI	GATC	2 cut(s)	419, 442
MboII	GAAGA	7 cut(s)	49, 233, 414, 506, 559, 672, 844
MfeI	CAATTG	2 cut(s)	174, 454
MflI	RGATCY	1 cut(s)	419
MluCI	AATT	8 cut(s)	58, 155, 174, 261, 454, 506, 648, 657
MmeI	TCCRAC	1 cut(s)	687
MnlI	CCTC	9 cut(s)	217, 352, 459, 720, 723, 732, 741, 747, 761
MseI	TTAA	3 cut(s)	372, 380, 495
MslI	CAYNNNNRTG	1 cut(s)	612
MspR9I	CCNGG	2 cut(s)	416, 735
MunI	CAATTG	2 cut(s)	174, 454
MvaI	CCWGG	2 cut(s)	416, 735
MwoI	GCNNNNNNNGC	3 cut(s)	320, 633, 807
NdeII	GATC	2 cut(s)	419, 442
NheI	GCTAGC	1 cut(s)	692
NlaIII	CATG	5 cut(s)	163, 216, 387, 602, 617
NlaIV	GGNNCC	2 cut(s)	72, 183
NmuCI	GTSAC	1 cut(s)	208
NspI	RCATGY	1 cut(s)	216
PagI	TCATGA	1 cut(s)	598
PceI	AGGCCT	2 cut(s)	730, 742
PciI	ACATGT	1 cut(s)	212
PcsI	WCGNNNNNNNCGW	1 cut(s)	799
PfeI	GAWTC	2 cut(s)	365, 686
PkrI	GCNGC	3 cut(s)	13, 46, 800
PscI	ACATGT	1 cut(s)	212
Psp1406I	AACGTT	1 cut(s)	666
Psp6I	CCWGG	2 cut(s)	414, 733
PspGI	CCWGG	2 cut(s)	414, 733
PspN4I	GGNNCC	2 cut(s)	72, 183
PsuI	RGATCY	1 cut(s)	419
RseI	CAYNNNNRTG	1 cut(s)	612
SaqAI	TTAA	3 cut(s)	372, 380, 495
SatI	GCNGC	3 cut(s)	12, 45, 799
Sau3AI	GATC	2 cut(s)	419, 442
ScrFI	CCNGG	2 cut(s)	416, 735
SfaNI	GCATC	1 cut(s)	385
SmiMI	CAYNNNNRTG	1 cut(s)	612
Sse9I	AATT	8 cut(s)	58, 155, 174, 261, 454, 506, 648, 657
SseBI	AGGCCT	2 cut(s)	730, 742
SsiI	CCGC	2 cut(s)	68, 163
SspMI	CTAG	4 cut(s)	336, 693, 744, 765
StuI	AGGCCT	2 cut(s)	730, 742
StyD4I	CCNGG	2 cut(s)	414, 733
StyI	CCWWGG	2 cut(s)	254, 743
TaiI	ACGT	1 cut(s)	669
TaqI	TCGA	2 cut(s)	449, 531
TasI	AATT	8 cut(s)	58, 155, 174, 261, 454, 506, 648, 657
TfiI	GAWTC	2 cut(s)	365, 686
Tru1I	TTAA	3 cut(s)	372, 380, 495
Tru9I	TTAA	3 cut(s)	372, 380, 495
TscAI	CASTG	2 cut(s)	703, 847
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	3 cut(s)	11, 44, 798
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	4 cut(s)	20, 148, 602, 694
TspRI	CASTG	2 cut(s)	703, 847
XapI	RAATTY	3 cut(s)	58, 155, 506
XbaI	TCTAGA	1 cut(s)	764
XceI	RCATGY	1 cut(s)	216
XcmI	CCANNNNNNNNNTGG	2 cut(s)	453, 670
XmaJI	CCTAGG	1 cut(s)	743
XmiI	GTMKAC	1 cut(s)	555
XspI	CTAG	4 cut(s)	336, 693, 744, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.