Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0016057

Physical Location & Seq

Genomic Coordinates Reverse (-)

10194740 .. 10195907

Gene Structure 1168 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGTGGAGTTCCCACAACCTAGTGGGGTTTCTGTAAGAGGGTTTAACTTCTCTTGGATTGTCACTCTACCAATAATGACTTGTCTAGCGGCCGTGGAAGGAGAGAACTTGCTCAAAGGTCCGTGGCTCGAAGAGGAAGATGAGCGACTCAAGACCTATGTAAATCTTAAGGGGGGTAGGAGGTGGGATGCGTTAGTGAAGGAATCAGGTCTAAGGAGGAGTGGTAGGAGTTGCAGCATGCGGTCGTTGAACTACCTCTGCCCAAACATTAAGCATGGTAAGATTACCATCATAGAAGAGAAAACCATTCTCCAACTTCATCAACGTTGGGGTAACAAGTGGTCAATGATTTCCCAAGCGCTGCCAGGAAGAACCGATAATGAGATCAAGAATTACTGGAGAACTCATTTAAAGAAGAAAATAGAAATTCAAGATGGCTTGTTTTATCTTCTTCAAAGCCCCACATTACTAACAGTTGCTCTGTCTGCAGGAAATTTCCAATGTACATTGAACAAAAACCAACAGGGTATTTTCTGTCAGGAAGGTGACATGAATGAGGAAAAATACGACTTTGATCAAAACCATGTCTCAGTAAAGAATTTATTCGAAACCAAGGTTACTAGCTCTGATGATCTTGGTTTATCGGACTTTGCGGCAACAAATTCTCCATACGAAACCCAGTTATCAGAATGGATATCTGAGCTATCAAGTGAACAAAGTGGAACAACCTATAATCAGGACTGTAATAGTGTCGAGTCCGATTTATGTCATCTTAAATGGACTCCGGATGATAGTGATGCATGGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

270

Amino Acids

30.73

Weight (kDa)

5.17

Isoelectric Point (pI)

56.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	39 - 86	2.5e-07	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	42 - 96	3.8e-06	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	99 - 137	2.2e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	99 - 142	2.3e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53200 AT3G53200
fragaria_vesca	FvH4_6g16660
malus_domestica	MD12G1108400.v1.1
prunus_persica	Prupe.7G126800_v2.0.a1
pyrus_communis	pycom04g08500 pycom12g10860
rosa_chinensis	RchiOBHm_Chr3g0470621
rosa_laevigata	RLG00000024253
rosa_multiflora	Rmu_sc0002115.1_g000020
rosa_roxburghii	Rroxscaffold_6G00410680
rosa_rugosa	Rorug03G0110600
rosa_samantha	Rh3AG160700 Rh3DG189500
rosa_wichuraiana	Rw3G015190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	784
AciI	CCGC	3 cut(s)	89, 241, 653
AclI	AACGTT	1 cut(s)	325
AcoI	YGGCCR	1 cut(s)	90
AcsI	RAATTY	4 cut(s)	426, 493, 598, 661
AfaI	GTAC	1 cut(s)	505
AfeI	AGCGCT	1 cut(s)	360
AflII	CTTAAG	1 cut(s)	167
AgsI	TTSAA	4 cut(s)	250, 431, 455, 511
AjnI	CCWGG	1 cut(s)	364
AluBI	AGCT	2 cut(s)	624, 703
AluI	AGCT	2 cut(s)	624, 703
Alw26I	GTCTC	1 cut(s)	592
Aor13HI	TCCGGA	1 cut(s)	784
Aor51HI	AGCGCT	1 cut(s)	360
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	2 cut(s)	234, 361
ApoI	RAATTY	4 cut(s)	426, 493, 598, 661
Asp700I	GAANNNNTTC	1 cut(s)	602
AspLEI	GCGC	1 cut(s)	361
AspS9I	GGNCC	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	557
AsuII	TTCGAA	1 cut(s)	606
AvaII	GGWCC	1 cut(s)	119
BbvI	GCAGC	2 cut(s)	246, 348
BccI	CCATC	2 cut(s)	296, 428
BceAI	ACGGC	1 cut(s)	77
BciT130I	CCWGG	1 cut(s)	366
BclI	TGATCA	1 cut(s)	574
BcoDI	GTCTC	1 cut(s)	592
BfaI	CTAG	3 cut(s)	21, 86, 621
BfmI	CTRYAG	1 cut(s)	486
BfoI	RGCGCY	1 cut(s)	362
BfrI	CTTAAG	1 cut(s)	167
BisI	GCNGC	4 cut(s)	90, 235, 362, 654
BlsI	GCNGC	4 cut(s)	91, 236, 363, 655
Bme1390I	CCNGG	1 cut(s)	366
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	119
BmrFI	CCNGG	1 cut(s)	366
BmrI	ACTGGG	1 cut(s)	673
BmsI	GCATC	2 cut(s)	178, 787
BmuI	ACTGGG	1 cut(s)	673
BpmI	CTGGAG	1 cut(s)	418
Bpu14I	TTCGAA	1 cut(s)	606
BpuEI	CTTGAG	1 cut(s)	134
BsaBI	GATNNNNATC	1 cut(s)	287
BsaJI	CCNNGG	3 cut(s)	93, 122, 612
BsaWI	WCCGGW	1 cut(s)	784
BsaXI	ACNNNNNCTCC	4 cut(s)	208, 238, 649, 679
Bse1I	ACTGG	2 cut(s)	401, 679
Bse8I	GATNNNNATC	1 cut(s)	287
BseAI	TCCGGA	1 cut(s)	784
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	3 cut(s)	93, 122, 612
BseGI	GGATG	2 cut(s)	193, 793
BseJI	GATNNNNATC	1 cut(s)	287
BseMII	CTCAG	2 cut(s)	603, 690
BseNI	ACTGG	2 cut(s)	401, 679
BseRI	GAGGAG	1 cut(s)	232
BseX3I	CGGCCG	1 cut(s)	90
BseXI	GCAGC	2 cut(s)	246, 348
Bsh1285I	CGRYCG	2 cut(s)	93, 245
BshFI	GGCC	1 cut(s)	92
BsiEI	CGRYCG	2 cut(s)	93, 245
BsiSI	CCGG	1 cut(s)	785
BsmAI	GTCTC	1 cut(s)	592
BsnI	GGCC	1 cut(s)	92
Bsp119I	TTCGAA	1 cut(s)	606
Bsp13I	TCCGGA	1 cut(s)	784
Bsp1407I	TGTACA	1 cut(s)	503
Bsp143I	GATC	3 cut(s)	384, 574, 631
BspACI	CCGC	3 cut(s)	89, 241, 653
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	2 cut(s)	602, 691
BspEI	TCCGGA	1 cut(s)	784
BspMAI	CTGCAG	1 cut(s)	490
BspT104I	TTCGAA	1 cut(s)	606
BspTI	CTTAAG	1 cut(s)	167
BsrGI	TGTACA	1 cut(s)	503
BsrI	ACTGG	2 cut(s)	401, 679
BssECI	CCNNGG	3 cut(s)	93, 122, 612
BssMI	GATC	3 cut(s)	384, 574, 631
BssT1I	CCWWGG	1 cut(s)	612
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	2 cut(s)	475, 743
Bst6I	CTCTTC	2 cut(s)	126, 291
BstAFI	CTTAAG	1 cut(s)	167
BstAUI	TGTACA	1 cut(s)	503
BstBI	TTCGAA	1 cut(s)	606
BstC8I	GCNNGC	1 cut(s)	239
BstDEI	CTNAG	3 cut(s)	212, 589, 699
BstDSI	CCRYGG	2 cut(s)	93, 122
BstF5I	GGATG	2 cut(s)	193, 793
BstH2I	RGCGCY	1 cut(s)	362
BstHHI	GCGC	1 cut(s)	361
BstKTI	GATC	3 cut(s)	387, 577, 634
BstMAI	GTCTC	1 cut(s)	592
BstMBI	GATC	3 cut(s)	384, 574, 631
BstMCI	CGRYCG	2 cut(s)	93, 245
BstMWI	GCNNNNNNNGC	1 cut(s)	485
BstNI	CCWGG	1 cut(s)	366
BstNSI	RCATGY	1 cut(s)	241
BstSCI	CCNGG	1 cut(s)	364
BstSFI	CTRYAG	1 cut(s)	486
BstV1I	GCAGC	2 cut(s)	246, 348
BstZI	CGGCCG	1 cut(s)	90
BsuRI	GGCC	1 cut(s)	92
BtgI	CCRYGG	2 cut(s)	93, 122
BtsCI	GGATG	2 cut(s)	193, 793
Cac8I	GCNNGC	1 cut(s)	239
CfoI	GCGC	1 cut(s)	361
Cfr13I	GGNCC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	504
CviAII	CATG	5 cut(s)	238, 275, 550, 584, 801
CviJI	RGCY	6 cut(s)	92, 127, 438, 459, 624, 703
CviKI_1	RGCY	6 cut(s)	92, 127, 438, 459, 624, 703
CviQI	GTAC	1 cut(s)	504
DdeI	CTNAG	3 cut(s)	212, 589, 699
DpnI	GATC	3 cut(s)	386, 576, 633
DpnII	GATC	3 cut(s)	384, 574, 631
DraI	TTTAAA	1 cut(s)	411
EaeI	YGGCCR	1 cut(s)	90
EagI	CGGCCG	1 cut(s)	90
Eam1104I	CTCTTC	2 cut(s)	126, 291
EarI	CTCTTC	2 cut(s)	126, 291
EclXI	CGGCCG	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	612
Eco32I	GATATC	1 cut(s)	696
Eco47I	GGWCC	1 cut(s)	119
Eco47III	AGCGCT	1 cut(s)	360
Eco52I	CGGCCG	1 cut(s)	90
EcoRII	CCWGG	1 cut(s)	364
EcoRV	GATATC	1 cut(s)	696
EcoT14I	CCWWGG	1 cut(s)	612
EcoT22I	ATGCAT	1 cut(s)	802
ErhI	CCWWGG	1 cut(s)	612
FaeI	CATG	5 cut(s)	241, 278, 553, 587, 804
FatI	CATG	5 cut(s)	237, 274, 549, 583, 800
FbaI	TGATCA	1 cut(s)	574
Fnu4HI	GCNGC	4 cut(s)	90, 235, 362, 654
FokI	GGATG	2 cut(s)	200, 800
Fsp4HI	GCNGC	4 cut(s)	90, 235, 362, 654
FspBI	CTAG	3 cut(s)	21, 86, 621
GlaI	GCGC	1 cut(s)	360
GluI	GCNGC	4 cut(s)	90, 235, 362, 654
GsuI	CTGGAG	1 cut(s)	418
HaeII	RGCGCY	1 cut(s)	362
HaeIII	GGCC	1 cut(s)	92
HapII	CCGG	1 cut(s)	785
HhaI	GCGC	1 cut(s)	361
Hin1II	CATG	5 cut(s)	241, 278, 553, 587, 804
Hin6I	GCGC	1 cut(s)	359
HinP1I	GCGC	1 cut(s)	359
HinfI	GANTC	4 cut(s)	147, 203, 755, 781
HpaII	CCGG	1 cut(s)	785
HphI	GGTGA	1 cut(s)	557
Hpy166II	GTNNAC	1 cut(s)	713
Hpy188I	TCNGA	5 cut(s)	628, 646, 688, 700, 760
Hpy188III	TCNNGA	6 cut(s)	151, 388, 431, 539, 737, 785
Hpy8I	GTNNAC	1 cut(s)	713
HpyAV	CCTTC	3 cut(s)	92, 193, 536
HpyCH4III	ACNGT	2 cut(s)	475, 743
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	3 cut(s)	234, 488, 800
HpyF10VI	GCNNNNNNNGC	1 cut(s)	485
HpyF3I	CTNAG	3 cut(s)	212, 589, 699
HpySE526I	ACGT	1 cut(s)	325
Hsp92II	CATG	5 cut(s)	241, 278, 553, 587, 804
HspAI	GCGC	1 cut(s)	359
Kpn2I	TCCGGA	1 cut(s)	784
Ksp22I	TGATCA	1 cut(s)	574
Kzo9I	GATC	3 cut(s)	384, 574, 631
Lsp1109I	GCAGC	2 cut(s)	246, 348
LweI	GCATC	2 cut(s)	178, 787
MaeI	CTAG	3 cut(s)	21, 86, 621
MaeII	ACGT	1 cut(s)	325
MaeIII	GTNAC	4 cut(s)	61, 332, 545, 616
MalI	GATC	3 cut(s)	386, 576, 633
MboI	GATC	3 cut(s)	384, 574, 631
MboII	GAAGA	7 cut(s)	143, 149, 308, 381, 427, 440, 443
MluCI	AATT	5 cut(s)	391, 426, 493, 598, 661
MlyI	GAGTC	3 cut(s)	141, 764, 775
MmeI	TCCRAC	1 cut(s)	337
MnlI	CCTC	6 cut(s)	32, 127, 174, 210, 266, 550
Mph1103I	ATGCAT	1 cut(s)	802
MroI	TCCGGA	1 cut(s)	784
MroXI	GAANNNNTTC	1 cut(s)	602
MseI	TTAA	5 cut(s)	45, 168, 270, 410, 774
MspCI	CTTAAG	1 cut(s)	167
MspI	CCGG	1 cut(s)	785
MspR9I	CCNGG	1 cut(s)	366
MvaI	CCWGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	1 cut(s)	485
NdeII	GATC	3 cut(s)	384, 574, 631
NlaIII	CATG	5 cut(s)	241, 278, 553, 587, 804
NmuCI	GTSAC	2 cut(s)	61, 545
NsiI	ATGCAT	1 cut(s)	802
NspI	RCATGY	1 cut(s)	241
NspV	TTCGAA	1 cut(s)	606
PaeI	GCATGC	1 cut(s)	241
PdmI	GAANNNNTTC	1 cut(s)	602
PfeI	GAWTC	1 cut(s)	203
PkrI	GCNGC	4 cut(s)	91, 236, 363, 655
PleI	GAGTC	3 cut(s)	141, 763, 775
PpsI	GAGTC	3 cut(s)	141, 763, 775
Psp1406I	AACGTT	1 cut(s)	325
Psp6I	CCWGG	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	364
PspPI	GGNCC	1 cut(s)	119
PstI	CTGCAG	1 cut(s)	490
RsaI	GTAC	1 cut(s)	505
RsaNI	GTAC	1 cut(s)	504
SaqAI	TTAA	5 cut(s)	45, 168, 270, 410, 774
SatI	GCNGC	4 cut(s)	90, 235, 362, 654
Sau3AI	GATC	3 cut(s)	384, 574, 631
Sau96I	GGNCC	1 cut(s)	119
SchI	GAGTC	3 cut(s)	141, 764, 775
ScrFI	CCNGG	1 cut(s)	366
SfaNI	GCATC	2 cut(s)	178, 787
SfcI	CTRYAG	1 cut(s)	486
SfuI	TTCGAA	1 cut(s)	606
SinI	GGWCC	1 cut(s)	119
SmlI	CTYRAG	2 cut(s)	149, 167
SmoI	CTYRAG	2 cut(s)	149, 167
SphI	GCATGC	1 cut(s)	241
Sse9I	AATT	5 cut(s)	391, 426, 493, 598, 661
SsiI	CCGC	3 cut(s)	89, 241, 653
SspMI	CTAG	3 cut(s)	21, 86, 621
StyD4I	CCNGG	1 cut(s)	364
StyI	CCWWGG	1 cut(s)	612
TaaI	ACNGT	2 cut(s)	475, 743
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	3 cut(s)	129, 606, 753
TasI	AATT	5 cut(s)	391, 426, 493, 598, 661
TatI	WGTACW	1 cut(s)	503
TauI	GCSGC	2 cut(s)	92, 656
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	5 cut(s)	45, 168, 270, 410, 774
Tru9I	TTAA	5 cut(s)	45, 168, 270, 410, 774
TseFI	GTSAC	2 cut(s)	61, 545
TseI	GCWGC	2 cut(s)	234, 361
Tsp45I	GTSAC	2 cut(s)	61, 545
TspDTI	ATGAA	2 cut(s)	308, 566
TspGWI	ACGGA	1 cut(s)	111
Vha464I	CTTAAG	1 cut(s)	167
VpaK11BI	GGWCC	1 cut(s)	119
XapI	RAATTY	4 cut(s)	426, 493, 598, 661
XceI	RCATGY	1 cut(s)	241
XmnI	GAANNNNTTC	1 cut(s)	602
XspI	CTAG	3 cut(s)	21, 86, 621
Zsp2I	ATGCAT	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.