pycom04g09540
NAC Family

NAC transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0015653
Physical Location & Seq
Forward (+)
12231017 .. 12232491
1475 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1008 bp
ATGGAGAGGGAAAACCAAGCCACCGAAAACATCCAGCTTCCTGCTGGATTCCGTTTTCACCCATCCGACGAAGAACTCATCGTTCATTATCTAAAAAACAAAGTCACTTCATGTCCTCTACCGGCAACCATCATCACTGAACTGGATCTGTATAAGTACAACCCGTGGGAGCTACCACCAAAAGCCTCCTTCGGGGAAGAAGAGTGGTATTTTTTCACCCCAAGGGATCGGAAGTACCCGAACGGAAGCAGGCCTAATAGAGCAGCTGGTTTGGGTTACTGGAAGGCCACGGGAACTGATAAGCATATTTTTAGTTCTTGTGGAACAAAAAGCATTGGGGTTAAAAAAGCACTTGTGTTCTACACAGGACACCCTCCGAAAGGTGTTAAGACGGAGTGGATCATGAACGAGTACAGATTGCTTGACACAACCATGTGGACTTCAAAGCAAAAAGGGTCGATGAGGGTAAGTTTCATCACTTCATATCCTGACGAATATGCATGTGCCTACACTAAGCAAGTGGATGAGCCCTGCTCGAATGATACAAACCCTAGCATCGAAATGGTCCGGAACTATCTGTACAAAGATTGTCCAATGCTACCCTACATTTTTGCCTCTCCTGAACTTCCTTACGCTAAAACCACTTCAAGCATAAGCTTTCAGGGAACTGGAAACGCGAAATCTTGCAGTACTTCCCTTCACGAGAACAATTCAAACAAAACCAATGAGCTGCTTCTAGTTTCTTCCCGTGATGATTTGATTAACCCTTTGAAGAGAAAACCTACAGAAGGAAATGGGTACAAGAGTTTTGTCACACCAAGCAAGAGGATATGTAGCAGAGATTACAAGGAGGAGGAAGTTAATTCCTCGACCAGCCGGGACTGTCGAGCGATGAACTTGTGGGGTGTAGACCAGTCTGGCTCAGCTGATAATAATTTGAATGCAGACCAATGGAGTTCCATGACCCAGTATCAAGAACTTAGCCAATTAATTGGCTTTCAGGTGTAA

Protein Analysis

336

Amino Acids

38.11

Weight (kDa)

6.95

Isoelectric Point (pI)

38.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 14 - 140 5.8e-48 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015653)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g15670
malus_domestica MD04G1100400.v1.1
prunus_persica Prupe.6G238600_v2.0.a1
pyrus_communis pycom04g09540
rosa_chinensis RchiOBHm_Chr3g0469371
rosa_laevigata RLG00000024355
rosa_multiflora Rmu_co8391809.1_g000001 Rmu_sc0013046.1_g000008 Rmu_sc0013047.1_g000009
rosa_roxburghii Rroxscaffold_6G00411950
rosa_rugosa Rorug03G0101000
rosa_samantha Rh3AG150200 Rh3BG173900 Rh3CG164900 Rh3DG201600
rosa_wichuraiana Rw3G014160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 909
AccII CGCG 1 cut(s) 677
AccIII TCCGGA 1 cut(s) 567
AclWI GGATC 3 cut(s) 153, 234, 407
AfaI GTAC 6 cut(s) 158, 236, 413, 581, 691, 800
AfiI CCNNNNNNNGG 3 cut(s) 192, 380, 788
AgsI TTSAA 5 cut(s) 444, 648, 714, 772, 940
AluBI AGCT 6 cut(s) 37, 172, 266, 657, 730, 926
AluI AGCT 6 cut(s) 37, 172, 266, 657, 730, 926
AlwI GGATC 3 cut(s) 153, 234, 407
Aor13HI TCCGGA 1 cut(s) 567
AoxI GGCC 2 cut(s) 251, 285
ApeKI GCWGC 2 cut(s) 263, 730
AseI ATTAAT 1 cut(s) 989
AspS9I GGNCC 1 cut(s) 565
AsuC2I CCSGG 1 cut(s) 878
AsuHPI GGTGA 2 cut(s) 50, 208
AvaII GGWCC 1 cut(s) 565
BaeI ACNNNNGTAYC 2 cut(s) 790, 823
BanII GRGCYC 1 cut(s) 531
BauI CACGAG 1 cut(s) 701
BbvI GCAGC 2 cut(s) 275, 717
BccI CCATC 2 cut(s) 70, 137
BcnI CCSGG 1 cut(s) 878
BfaI CTAG 2 cut(s) 552, 737
BfmI CTRYAG 1 cut(s) 783
BisI GCNGC 2 cut(s) 264, 731
BlpI GCTNAGC 1 cut(s) 922
BlsI GCNGC 2 cut(s) 265, 732
BmcAI AGTACT 1 cut(s) 691
Bme1390I CCNGG 1 cut(s) 878
Bme18I GGWCC 1 cut(s) 565
BmgT120I GGNCC 1 cut(s) 565
BmrFI CCNGG 1 cut(s) 878
BmrI ACTGGG 1 cut(s) 961
BmsI GCATC 1 cut(s) 564
BmuI ACTGGG 1 cut(s) 961
BplI GAGNNNNNCTC 2 cut(s) 518, 550
Bpu1102I GCTNAGC 1 cut(s) 922
BpuMI CCSGG 1 cut(s) 878
BsaJI CCNNGG 3 cut(s) 164, 221, 288
BsaWI WCCGGW 1 cut(s) 567
Bsc4I CCNNNNNNNGG 3 cut(s) 192, 380, 788
Bse118I RCCGGY 1 cut(s) 121
Bse1I ACTGG 5 cut(s) 147, 284, 673, 913, 967
BseAI TCCGGA 1 cut(s) 567
BseDI CCNNGG 3 cut(s) 164, 221, 288
BseGI GGATG 3 cut(s) 30, 62, 529
BseLI CCNNNNNNNGG 3 cut(s) 192, 380, 788
BseMII CTCAG 1 cut(s) 936
BseNI ACTGG 5 cut(s) 147, 284, 673, 913, 967
BseRI GAGGAG 1 cut(s) 866
BseXI GCAGC 2 cut(s) 275, 717
Bsh1236I CGCG 1 cut(s) 677
BshFI GGCC 2 cut(s) 253, 287
BsiSI CCGG 3 cut(s) 122, 568, 877
BslFI GGGAC 1 cut(s) 893
BslI CCNNNNNNNGG 3 cut(s) 192, 380, 788
BsmFI GGGAC 1 cut(s) 893
BsmI GAATGC 1 cut(s) 946
BsnI GGCC 2 cut(s) 253, 287
Bsp1286I GDGCHC 1 cut(s) 531
Bsp13I TCCGGA 1 cut(s) 567
Bsp1407I TGTACA 1 cut(s) 579
Bsp143I GATC 3 cut(s) 145, 226, 399
Bsp1720I GCTNAGC 1 cut(s) 922
BspANI GGCC 2 cut(s) 253, 287
BspCNI CTCAG 1 cut(s) 935
BspEI TCCGGA 1 cut(s) 567
BspFNI CGCG 1 cut(s) 677
BspHI TCATGA 1 cut(s) 402
BspPI GGATC 3 cut(s) 153, 234, 407
BsrFI RCCGGY 1 cut(s) 121
BsrGI TGTACA 1 cut(s) 579
BsrI ACTGG 5 cut(s) 147, 284, 673, 913, 967
BssAI RCCGGY 1 cut(s) 121
BssECI CCNNGG 3 cut(s) 164, 221, 288
BssMI GATC 3 cut(s) 145, 226, 399
BssSI CACGAG 1 cut(s) 701
BssT1I CCWWGG 1 cut(s) 221
Bst2BI CACGAG 1 cut(s) 701
Bst4CI ACNGT 1 cut(s) 884
Bst6I CTCTTC 2 cut(s) 195, 767
BstAUI TGTACA 1 cut(s) 579
BstC8I GCNNGC 1 cut(s) 251
BstDEI CTNAG 3 cut(s) 513, 922, 980
BstDSI CCRYGG 2 cut(s) 164, 288
BstENI CCTNNNNNAGG 2 cut(s) 378, 786
BstF5I GGATG 3 cut(s) 30, 62, 529
BstFNI CGCG 1 cut(s) 677
BstKTI GATC 3 cut(s) 148, 229, 402
BstMBI GATC 3 cut(s) 145, 226, 399
BstNSI RCATGY 1 cut(s) 504
BstSCI CCNGG 1 cut(s) 876
BstSFI CTRYAG 1 cut(s) 783
BstUI CGCG 1 cut(s) 677
BstV1I GCAGC 2 cut(s) 275, 717
BstX2I RGATCY 1 cut(s) 145
BstXI CCANNNNNNTGG 1 cut(s) 992
BstYI RGATCY 1 cut(s) 145
BsuRI GGCC 2 cut(s) 253, 287
BtgI CCRYGG 2 cut(s) 164, 288
BtgZI GCGATG 1 cut(s) 905
BtsCI GGATG 3 cut(s) 30, 62, 529
BtsIMutI CAGTG 1 cut(s) 135
Cac8I GCNNGC 1 cut(s) 251
CciI TCATGA 1 cut(s) 402
Cfr10I RCCGGY 1 cut(s) 121
Cfr13I GGNCC 1 cut(s) 565
Csp6I GTAC 6 cut(s) 157, 235, 412, 580, 690, 799
CviAII CATG 5 cut(s) 111, 403, 433, 501, 961
CviQI GTAC 6 cut(s) 157, 235, 412, 580, 690, 799
DdeI CTNAG 3 cut(s) 513, 922, 980
DpnI GATC 3 cut(s) 147, 228, 401
DpnII GATC 3 cut(s) 145, 226, 399
Eam1104I CTCTTC 2 cut(s) 195, 767
EarI CTCTTC 2 cut(s) 195, 767
Eco130I CCWWGG 1 cut(s) 221
Eco147I AGGCCT 1 cut(s) 253
Eco24I GRGCYC 1 cut(s) 531
Eco47I GGWCC 1 cut(s) 565
EcoNI CCTNNNNNAGG 2 cut(s) 378, 786
EcoT14I CCWWGG 1 cut(s) 221
EcoT22I ATGCAT 1 cut(s) 502
EcoT38I GRGCYC 1 cut(s) 531
ErhI CCWWGG 1 cut(s) 221
FaeI CATG 5 cut(s) 114, 406, 436, 504, 964
FaqI GGGAC 1 cut(s) 893
FatI CATG 5 cut(s) 110, 402, 432, 500, 960
FblI GTMKAC 1 cut(s) 909
Fnu4HI GCNGC 2 cut(s) 264, 731
FokI GGATG 3 cut(s) 17, 49, 536
FriOI GRGCYC 1 cut(s) 531
Fsp4HI GCNGC 2 cut(s) 264, 731
FspBI CTAG 2 cut(s) 552, 737
GluI GCNGC 2 cut(s) 264, 731
HaeIII GGCC 2 cut(s) 253, 287
HapII CCGG 3 cut(s) 122, 568, 877
Hin1II CATG 5 cut(s) 114, 406, 436, 504, 964
HindIII AAGCTT 1 cut(s) 655
HinfI GANTC 1 cut(s) 48
HpaII CCGG 3 cut(s) 122, 568, 877
HphI GGTGA 2 cut(s) 50, 208
Hpy166II GTNNAC 2 cut(s) 438, 910
Hpy188I TCNGA 3 cut(s) 67, 231, 378
Hpy188III TCNNGA 6 cut(s) 403, 488, 568, 620, 701, 974
Hpy8I GTNNAC 2 cut(s) 438, 910
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 4 cut(s) 199, 277, 707, 782
HpyCH4III ACNGT 1 cut(s) 884
HpyCH4V TGCA 3 cut(s) 500, 687, 944
HpyF3I CTNAG 3 cut(s) 513, 922, 980
Hsp92II CATG 5 cut(s) 114, 406, 436, 504, 964
Kpn2I TCCGGA 1 cut(s) 567
Kzo9I GATC 3 cut(s) 145, 226, 399
LmnI GCTCC 1 cut(s) 169
Lsp1109I GCAGC 2 cut(s) 275, 717
LweI GCATC 1 cut(s) 564
MaeI CTAG 2 cut(s) 552, 737
MaeIII GTNAC 3 cut(s) 103, 275, 811
MalI GATC 3 cut(s) 147, 228, 401
MboI GATC 3 cut(s) 145, 226, 399
MboII GAAGA 5 cut(s) 83, 209, 212, 735, 784
MflI RGATCY 1 cut(s) 145
MhlI GDGCHC 1 cut(s) 531
MluCI AATT 5 cut(s) 709, 862, 934, 986, 990
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 9 cut(s) 126, 196, 384, 456, 625, 819, 844, 847, 877
Mph1103I ATGCAT 1 cut(s) 502
MroI TCCGGA 1 cut(s) 567
MseI TTAA 5 cut(s) 342, 387, 762, 861, 989
MslI CAYNNNNRTG 2 cut(s) 431, 560
MspA1I CMGCKG 2 cut(s) 266, 926
MspI CCGG 3 cut(s) 122, 568, 877
MspR9I CCNGG 1 cut(s) 878
Mva1269I GAATGC 1 cut(s) 946
MvnI CGCG 1 cut(s) 677
NciI CCSGG 1 cut(s) 878
NdeII GATC 3 cut(s) 145, 226, 399
NlaIII CATG 5 cut(s) 114, 406, 436, 504, 964
NmuCI GTSAC 2 cut(s) 103, 811
NsiI ATGCAT 1 cut(s) 502
NspI RCATGY 1 cut(s) 504
PagI TCATGA 1 cut(s) 402
PceI AGGCCT 1 cut(s) 253
PctI GAATGC 1 cut(s) 946
PfeI GAWTC 1 cut(s) 48
PkrI GCNGC 2 cut(s) 265, 732
PshBI ATTAAT 1 cut(s) 989
PspPI GGNCC 1 cut(s) 565
PsrI GAACNNNNNNTAC 2 cut(s) 563, 595
PsuI RGATCY 1 cut(s) 145
PvuII CAGCTG 2 cut(s) 266, 926
RsaI GTAC 6 cut(s) 158, 236, 413, 581, 691, 800
RsaNI GTAC 6 cut(s) 157, 235, 412, 580, 690, 799
RseI CAYNNNNRTG 2 cut(s) 431, 560
SaqAI TTAA 5 cut(s) 342, 387, 762, 861, 989
SatI GCNGC 2 cut(s) 264, 731
Sau3AI GATC 3 cut(s) 145, 226, 399
Sau96I GGNCC 1 cut(s) 565
ScaI AGTACT 1 cut(s) 691
ScrFI CCNGG 1 cut(s) 878
SduI GDGCHC 1 cut(s) 531
SetI ASST 9 cut(s) 39, 174, 268, 385, 659, 732, 784, 928, 1005
SfaNI GCATC 1 cut(s) 564
SfcI CTRYAG 1 cut(s) 783
SinI GGWCC 1 cut(s) 565
SmiMI CAYNNNNRTG 2 cut(s) 431, 560
Sse9I AATT 5 cut(s) 709, 862, 934, 986, 990
SseBI AGGCCT 1 cut(s) 253
SspMI CTAG 2 cut(s) 552, 737
StuI AGGCCT 1 cut(s) 253
StyD4I CCNGG 1 cut(s) 876
StyI CCWWGG 1 cut(s) 221
TaaI ACNGT 1 cut(s) 884
TaqI TCGA 5 cut(s) 458, 536, 558, 869, 886
TasI AATT 5 cut(s) 709, 862, 934, 986, 990
TatI WGTACW 4 cut(s) 156, 411, 579, 689
TfiI GAWTC 1 cut(s) 48
Tru1I TTAA 5 cut(s) 342, 387, 762, 861, 989
Tru9I TTAA 5 cut(s) 342, 387, 762, 861, 989
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 2 cut(s) 103, 811
TseI GCWGC 2 cut(s) 263, 730
Tsp45I GTSAC 2 cut(s) 103, 811
TspDTI ATGAA 6 cut(s) 74, 99, 419, 463, 471, 908
TspGWI ACGGA 3 cut(s) 41, 258, 407
TspRI CASTG 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 565
VspI ATTAAT 1 cut(s) 989
XagI CCTNNNNNAGG 2 cut(s) 378, 786
XceI RCATGY 1 cut(s) 504
XcmI CCANNNNNNNNNTGG 1 cut(s) 41
XmiI GTMKAC 1 cut(s) 909
XspI CTAG 2 cut(s) 552, 737
ZrmI AGTACT 1 cut(s) 691
Zsp2I ATGCAT 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.