Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0012999

Physical Location & Seq

Genomic Coordinates Reverse (-)

12576358 .. 12579264

Gene Structure 2907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g09830.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGTTCAGCGTTAAATGCAGATATGCAGAGGTGAATGTAAAAACGGATTTCAATTCCACCACAATAGACGTTGTGGCCGATGTTAAACCTGAACGGGTTGTTGTATTAGGAGGCACCGGTTTTGTTGGTTCTGCTATATGCAAGGCTGCGGTATCCAGAGGAATAGAGGTCGTTGGCGTGAGCAGGTCAGGGCGTCCCACTTACTCCGGTGCGTGGATAGATCAGGTTAACTGGGTGCCAGGAGATGTTTTCTATGTAAACTGGGATGAAGTACTTATTGGGGCCACCGCTGTGGTTTCAACCATTGGTGGTTTTGGCAGCGAGGAACAGATGCAAAGGATTAATGGGGAGGCAAATGTTGTTGCTGTGAATGCTGCGAAGGATTACGGAGTTCCCAAGTTTATCTTGATCTCAGTGCATGATTACAATCTACCTCCATTTTTGCTTTCATCTGGGTACTTCACAGGAAAGAGAAAAGCTGAATCAGAGGTTCTCTCCAAATATCCCAATTCTGGTATTGTGCTTAGACCTGGTTTCATATACGGGAAACGGAGGGTGGATGGTTTTGAGATTCCTTTGGATTTGATAGGTGAACCATTGGAAAGATTTATTAATGCTACTGAAAACTTTACCAAACCGTTGAGTTCTCTTCCAGCATCTGATCTGCTCTTGGCTCCACCTGTTAGTGTCGATGATGTTGCACTTGCCGCAATCAATGGAATCAGAGATGATGATTTCTTCGGCATTTTTACCATTGCACAAATTAAGGAGGCTGCGGAGAAGGTGAGGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010287 GO:0016491 GO:0016651 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901004 GO:1901006 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAD_binding_10

Protein Analysis

265

Amino Acids

28.56

Weight (kDa)

5.09

Isoelectric Point (pI)

27.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32220
fragaria_vesca	FvH4_5g23050 FvH4_5g23050
malus_domestica	MD04G1103200.v1.1
pyrus_communis	pycom04g09830
rosa_chinensis	RchiOBHm_Chr7g0211771
rosa_laevigata	RLG00000002970
rosa_multiflora	Rmu_sc0014977.1_g000002 Rmu_sc0015845.1_g000001 Rmu_sc0016160.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247460
rosa_rugosa	Rorug07G0128500 Rorug07G0128500
rosa_samantha	Rh7AG261200 Rh7BG254700 Rh7CG277800 Rh7DG267800
rosa_wichuraiana	Rw7G022260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	174
AccB1I	GGYRCC	2 cut(s)	113, 235
AciI	CCGC	4 cut(s)	149, 288, 708, 776
AcoI	YGGCCR	1 cut(s)	75
AcyI	GRCGYC	1 cut(s)	193
AfaI	GTAC	2 cut(s)	273, 458
AfiI	CCNNNNNNNGG	2 cut(s)	213, 512
AgeI	ACCGGT	1 cut(s)	116
AgsI	TTSAA	2 cut(s)	52, 300
AjnI	CCWGG	2 cut(s)	238, 529
AjuI	GAANNNNNNNTTGG	2 cut(s)	261, 293
AleI	CACNNNNGTG	1 cut(s)	290
AluBI	AGCT	1 cut(s)	479
AluI	AGCT	1 cut(s)	479
AlwNI	CAGNNNCTG	1 cut(s)	659
AoxI	GGCC	2 cut(s)	75, 282
ApeKI	GCWGC	4 cut(s)	146, 318, 374, 773
AseI	ATTAAT	2 cut(s)	342, 612
AsiGI	ACCGGT	1 cut(s)	116
AspS9I	GGNCC	1 cut(s)	282
AsuHPI	GGTGA	2 cut(s)	43, 602
BanI	GGYRCC	2 cut(s)	113, 235
BbvI	GCAGC	4 cut(s)	133, 330, 361, 760
BccI	CCATC	1 cut(s)	554
BcgI	CGANNNNNNTGC	2 cut(s)	680, 714
BciT130I	CCWGG	2 cut(s)	240, 531
BciVI	GTATCC	1 cut(s)	163
BfuAI	ACCTGC	1 cut(s)	174
BfuI	GTATCC	1 cut(s)	163
BisI	GCNGC	5 cut(s)	147, 319, 375, 708, 774
BlsI	GCNGC	5 cut(s)	148, 320, 376, 709, 775
BmcAI	AGTACT	1 cut(s)	273
Bme1390I	CCNGG	2 cut(s)	240, 531
BmgT120I	GGNCC	1 cut(s)	282
BmiI	GGNNCC	4 cut(s)	115, 237, 283, 675
BmrFI	CCNGG	2 cut(s)	240, 531
BmrI	ACTGGG	2 cut(s)	241, 271
BmsI	GCATC	2 cut(s)	321, 665
BmuI	ACTGGG	2 cut(s)	241, 271
BplI	GAGNNNNNCTC	2 cut(s)	479, 511
BsaBI	GATNNNNATC	1 cut(s)	426
BsaHI	GRCGYC	1 cut(s)	193
BsaWI	WCCGGW	2 cut(s)	116, 206
Bsc4I	CCNNNNNNNGG	2 cut(s)	213, 512
Bse118I	RCCGGY	1 cut(s)	116
Bse1I	ACTGG	2 cut(s)	236, 266
Bse3DI	GCAATG	1 cut(s)	753
Bse8I	GATNNNNATC	1 cut(s)	426
BseBI	CCWGG	2 cut(s)	240, 531
BseGI	GGATG	2 cut(s)	271, 565
BseJI	GATNNNNATC	1 cut(s)	426
BseLI	CCNNNNNNNGG	2 cut(s)	213, 512
BseMI	GCAATG	1 cut(s)	753
BseMII	CTCAG	1 cut(s)	426
BseNI	ACTGG	2 cut(s)	236, 266
BseXI	GCAGC	4 cut(s)	133, 330, 361, 760
BshFI	GGCC	2 cut(s)	77, 284
BshNI	GGYRCC	2 cut(s)	113, 235
BshTI	ACCGGT	1 cut(s)	116
BsiSI	CCGG	2 cut(s)	117, 207
BslFI	GGGAC	1 cut(s)	180
BslI	CCNNNNNNNGG	2 cut(s)	213, 512
BsmFI	GGGAC	1 cut(s)	180
BsmI	GAATGC	1 cut(s)	376
BsnI	GGCC	2 cut(s)	77, 284
Bsp143I	GATC	3 cut(s)	220, 408, 661
BspACI	CCGC	4 cut(s)	149, 288, 708, 776
BspANI	GGCC	2 cut(s)	77, 284
BspCNI	CTCAG	1 cut(s)	425
BspLI	GGNNCC	4 cut(s)	115, 237, 283, 675
BspMI	ACCTGC	1 cut(s)	174
BspT107I	GGYRCC	2 cut(s)	113, 235
BsrDI	GCAATG	1 cut(s)	753
BsrFI	RCCGGY	1 cut(s)	116
BsrI	ACTGG	2 cut(s)	236, 266
BssAI	RCCGGY	1 cut(s)	116
BssMI	GATC	3 cut(s)	220, 408, 661
BssNI	GRCGYC	1 cut(s)	193
Bst2UI	CCWGG	2 cut(s)	240, 531
Bst4CI	ACNGT	1 cut(s)	639
Bst6I	CTCTTC	1 cut(s)	654
BstACI	GRCGYC	1 cut(s)	193
BstDEI	CTNAG	2 cut(s)	412, 524
BstF5I	GGATG	2 cut(s)	271, 565
BstKTI	GATC	3 cut(s)	223, 411, 664
BstMBI	GATC	3 cut(s)	220, 408, 661
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 371, 707
BstNI	CCWGG	2 cut(s)	240, 531
BstSCI	CCNGG	2 cut(s)	238, 529
BstV1I	GCAGC	4 cut(s)	133, 330, 361, 760
BstXI	CCANNNNNNTGG	1 cut(s)	292
BsuI	GTATCC	1 cut(s)	163
BsuRI	GGCC	2 cut(s)	77, 284
BtsCI	GGATG	2 cut(s)	271, 565
BtsIMutI	CAGTG	1 cut(s)	420
BveI	ACCTGC	1 cut(s)	174
CaiI	CAGNNNCTG	1 cut(s)	659
Cfr10I	RCCGGY	1 cut(s)	116
Cfr13I	GGNCC	1 cut(s)	282
CseI	GACGC	1 cut(s)	182
CsiI	ACCWGGT	1 cut(s)	529
Csp6I	GTAC	2 cut(s)	272, 457
CspAI	ACCGGT	1 cut(s)	116
CviAII	CATG	1 cut(s)	419
CviJI	RGCY	6 cut(s)	77, 146, 284, 479, 674, 773
CviKI_1	RGCY	6 cut(s)	77, 146, 284, 479, 674, 773
CviQI	GTAC	2 cut(s)	272, 457
DdeI	CTNAG	2 cut(s)	412, 524
DpnI	GATC	3 cut(s)	222, 410, 663
DpnII	GATC	3 cut(s)	220, 408, 661
EaeI	YGGCCR	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	654
EarI	CTCTTC	1 cut(s)	654
EcoRII	CCWGG	2 cut(s)	238, 529
FaeI	CATG	1 cut(s)	422
FaiI	YATR	7 cut(s)	24, 137, 139, 255, 420, 539, 541
FalI	AAGNNNNNCTT	2 cut(s)	389, 421
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	1 cut(s)	418
Fnu4HI	GCNGC	5 cut(s)	147, 319, 375, 708, 774
FokI	GGATG	2 cut(s)	278, 572
Fsp4HI	GCNGC	5 cut(s)	147, 319, 375, 708, 774
GluI	GCNGC	5 cut(s)	147, 319, 375, 708, 774
HaeIII	GGCC	2 cut(s)	77, 284
HapII	CCGG	2 cut(s)	117, 207
HgaI	GACGC	1 cut(s)	182
Hin1I	GRCGYC	1 cut(s)	193
Hin1II	CATG	1 cut(s)	422
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	3 cut(s)	482, 571, 720
HpaI	GTTAAC	1 cut(s)	229
HpaII	CCGG	2 cut(s)	117, 207
HphI	GGTGA	2 cut(s)	43, 602
Hpy166II	GTNNAC	3 cut(s)	229, 259, 593
Hpy188I	TCNGA	3 cut(s)	487, 661, 725
Hpy188III	TCNNGA	2 cut(s)	156, 406
Hpy8I	GTNNAC	3 cut(s)	229, 259, 593
HpyAV	CCTTC	2 cut(s)	373, 775
HpyCH4III	ACNGT	1 cut(s)	639
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	7 cut(s)	18, 26, 141, 334, 418, 701, 758
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 371, 707
HpyF3I	CTNAG	2 cut(s)	412, 524
HpySE526I	ACGT	1 cut(s)	69
Hsp92I	GRCGYC	1 cut(s)	193
Hsp92II	CATG	1 cut(s)	422
KspAI	GTTAAC	1 cut(s)	229
Kzo9I	GATC	3 cut(s)	220, 408, 661
LmnI	GCTCC	1 cut(s)	679
Lsp1109I	GCAGC	4 cut(s)	133, 330, 361, 760
LweI	GCATC	2 cut(s)	321, 665
MabI	ACCWGGT	1 cut(s)	529
MaeII	ACGT	1 cut(s)	69
MalI	GATC	3 cut(s)	222, 410, 663
MboI	GATC	3 cut(s)	220, 408, 661
MboII	GAAGA	2 cut(s)	641, 730
MluCI	AATT	3 cut(s)	52, 508, 762
MseI	TTAA	6 cut(s)	12, 84, 228, 342, 612, 765
MslI	CAYNNNNRTG	1 cut(s)	290
MspA1I	CMGCKG	1 cut(s)	290
MspI	CCGG	2 cut(s)	117, 207
MspR9I	CCNGG	2 cut(s)	240, 531
Mva1269I	GAATGC	1 cut(s)	376
MvaI	CCWGG	2 cut(s)	240, 531
MwoI	GCNNNNNNNGC	3 cut(s)	15, 371, 707
NdeII	GATC	3 cut(s)	220, 408, 661
NlaIII	CATG	1 cut(s)	422
NlaIV	GGNNCC	4 cut(s)	115, 237, 283, 675
OliI	CACNNNNGTG	1 cut(s)	290
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PctI	GAATGC	1 cut(s)	376
PfeI	GAWTC	3 cut(s)	482, 571, 720
PinAI	ACCGGT	1 cut(s)	116
PkrI	GCNGC	5 cut(s)	148, 320, 376, 709, 775
PshBI	ATTAAT	2 cut(s)	342, 612
Psp6I	CCWGG	2 cut(s)	238, 529
PspGI	CCWGG	2 cut(s)	238, 529
PspN4I	GGNNCC	4 cut(s)	115, 237, 283, 675
PspPI	GGNCC	1 cut(s)	282
PstNI	CAGNNNCTG	1 cut(s)	659
RsaI	GTAC	2 cut(s)	273, 458
RsaNI	GTAC	2 cut(s)	272, 457
RseI	CAYNNNNRTG	1 cut(s)	290
SaqAI	TTAA	6 cut(s)	12, 84, 228, 342, 612, 765
SatI	GCNGC	5 cut(s)	147, 319, 375, 708, 774
Sau3AI	GATC	3 cut(s)	220, 408, 661
Sau96I	GGNCC	1 cut(s)	282
ScaI	AGTACT	1 cut(s)	273
ScrFI	CCNGG	2 cut(s)	240, 531
SexAI	ACCWGGT	1 cut(s)	529
SfaNI	GCATC	2 cut(s)	321, 665
SmiMI	CAYNNNNRTG	1 cut(s)	290
Sse9I	AATT	3 cut(s)	52, 508, 762
SsiI	CCGC	4 cut(s)	149, 288, 708, 776
StyD4I	CCNGG	2 cut(s)	238, 529
TaaI	ACNGT	1 cut(s)	639
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	1 cut(s)	690
TasI	AATT	3 cut(s)	52, 508, 762
TatI	WGTACW	1 cut(s)	271
TauI	GCSGC	1 cut(s)	710
TfiI	GAWTC	3 cut(s)	482, 571, 720
Tru1I	TTAA	6 cut(s)	12, 84, 228, 342, 612, 765
Tru9I	TTAA	6 cut(s)	12, 84, 228, 342, 612, 765
TscAI	CASTG	1 cut(s)	420
TseI	GCWGC	4 cut(s)	146, 318, 374, 773
TspDTI	ATGAA	3 cut(s)	282, 438, 526
TspGWI	ACGGA	3 cut(s)	59, 402, 565
TspRI	CASTG	1 cut(s)	420
VspI	ATTAAT	2 cut(s)	342, 612
ZrmI	AGTACT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.