Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0012999

Physical Location & Seq

Genomic Coordinates Forward (+)

40772613 .. 40776027

Gene Structure 3415 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00247460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGACGTCGTTTCTGCACTTCCCTGCAACTTCCTCGCTTCCTTCTTCTCTCCGCGGACCTTCCCTCGCAGCTCGCCCCAATCCCACCTCGCTCTCTCAGACCCGGTTCAGTGTTAAATGCAGGTACGCAGAGGCAGGCGTAAAGAGCGAGGACTTCAATTCCGGCGCCATAGACGTTGTGGCTGATGTCAGGCCTGAACGGGTTGTGGTATTGGGAGGGAGTGGTTTTGTTGGTTCTGCTATATGTAAGGCTGCGGTGTCCAAAGGCATAGAGGTCGTAGGTGTGAGCAGGTCGGGACGGCCGACGTACTCCGGTTCATGGATTGATCAGTTAAGAGCATTTTGGACTGGAGACGTTTTTTATGTAAACTGGGATGAAGTACTTCTTGGGGCCACTGCAGTGGTTTCAACAATTGGTGGTTTTGGCAGTGAGGAACAGATGCAAAGGATTAATGGCGAGGCAAATGTTGTTGCTGTGAATGCTGCAAAGGAATATGGGGTTCCAAAGTTTGTCTTGATCTCGGTGCATGATTACAATCTACCTCCATTTCTACTTTCATCTGGATACTTCACAGGAAAGAGAAAAGCTGAATCAGAGGTTCTCTCCAAATATCCCAACTCTGGAGTTGTTTTAAGACCTGGTTTCATATATGGGAAAAGGAAGGTCGATGGATTTGAGATTCCTTTGGATCTGATAGGAGAACCAGTGGAAAGAATTCTACGTGCTACTGAGAGCTTTACCAAACCATTGAGTTCTCTTCCAGCATCCGATCTGCTCTTGGCTCCACCTGTTAGTGTTGATGATGTTGCATTTGCTGCAATCAATGCAATAAGAGACGATGACTTCTTCGGCATTTTTACTATTGCACAAATTAAGGAAGCTGCTGAGAAGGTTAGGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010287 GO:0016491 GO:0016651 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901004 GO:1901006 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAD_binding_10

Protein Analysis

300

Amino Acids

32.23

Weight (kDa)

6.21

Isoelectric Point (pI)

35.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	68 - 223	6.1e-09	NAD dependent epimerase/dehydratase family
NAD_binding_10	PF13460	72 - 200	7.8e-08	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32220
fragaria_vesca	FvH4_5g23050 FvH4_5g23050
malus_domestica	MD04G1103200.v1.1
pyrus_communis	pycom04g09830
rosa_chinensis	RchiOBHm_Chr7g0211771
rosa_laevigata	RLG00000002970
rosa_multiflora	Rmu_sc0014977.1_g000002 Rmu_sc0015845.1_g000001 Rmu_sc0016160.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247460
rosa_rugosa	Rorug07G0128500 Rorug07G0128500
rosa_samantha	Rh7AG261200 Rh7BG254700 Rh7CG277800 Rh7DG267800
rosa_wichuraiana	Rw7G022260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	8
Acc36I	ACCTGC	2 cut(s)	111, 279
AccB1I	GGYRCC	1 cut(s)	164
AccII	CGCG	1 cut(s)	54
AciI	CCGC	3 cut(s)	52, 54, 254
AclWI	GGATC	1 cut(s)	696
AcoI	YGGCCR	1 cut(s)	299
AcsI	RAATTY	1 cut(s)	714
AcyI	GRCGYC	2 cut(s)	5, 165
AfaI	GTAC	3 cut(s)	125, 308, 381
AfiI	CCNNNNNNNGG	2 cut(s)	318, 620
AgsI	TTSAA	2 cut(s)	157, 408
AjnI	CCWGG	1 cut(s)	637
AjuI	GAANNNNNNNTTGG	2 cut(s)	369, 401
AleI	CACNNNNGTG	1 cut(s)	398
AluBI	AGCT	4 cut(s)	71, 587, 735, 881
AluI	AGCT	4 cut(s)	71, 587, 735, 881
Alw26I	GTCTC	2 cut(s)	345, 828
AlwI	GGATC	1 cut(s)	696
AoxI	GGCC	3 cut(s)	191, 299, 390
ApeKI	GCWGC	5 cut(s)	68, 251, 482, 815, 881
ApoI	RAATTY	1 cut(s)	714
AseI	ATTAAT	1 cut(s)	450
Asp700I	GAANNNNTTC	2 cut(s)	381, 714
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	2 cut(s)	56, 390
AsuC2I	CCSGG	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	56
BanI	GGYRCC	1 cut(s)	164
BbvI	GCAGC	5 cut(s)	80, 238, 469, 802, 868
BccI	CCATC	1 cut(s)	662
BceAI	ACGGC	1 cut(s)	314
BcgI	CGANNNNNNTGC	4 cut(s)	15, 49, 256, 290
BciT130I	CCWGG	1 cut(s)	639
BciVI	GTATCC	1 cut(s)	557
BclI	TGATCA	1 cut(s)	325
BcnI	CCSGG	1 cut(s)	103
BcoDI	GTCTC	2 cut(s)	345, 828
BfmI	CTRYAG	1 cut(s)	396
BfoI	RGCGCY	1 cut(s)	168
BfuAI	ACCTGC	2 cut(s)	111, 279
BfuI	GTATCC	1 cut(s)	557
BisI	GCNGC	5 cut(s)	69, 252, 483, 816, 882
BlsI	GCNGC	5 cut(s)	70, 253, 484, 817, 883
BmcAI	AGTACT	1 cut(s)	381
Bme1390I	CCNGG	2 cut(s)	103, 639
Bme18I	GGWCC	1 cut(s)	56
BmgT120I	GGNCC	2 cut(s)	56, 390
BmiI	GGNNCC	4 cut(s)	166, 391, 501, 783
BmrFI	CCNGG	2 cut(s)	103, 639
BmrI	ACTGGG	1 cut(s)	379
BmsI	GCATC	2 cut(s)	429, 773
BmuI	ACTGGG	1 cut(s)	379
BplI	GAGNNNNNCTC	2 cut(s)	587, 619
BpmI	CTGGAG	2 cut(s)	369, 642
BpuMI	CCSGG	1 cut(s)	103
BsaAI	YACGTR	1 cut(s)	722
BsaBI	GATNNNNATC	1 cut(s)	534
BsaHI	GRCGYC	2 cut(s)	5, 165
BsaJI	CCNNGG	1 cut(s)	52
BsaWI	WCCGGW	1 cut(s)	311
BsaXI	ACNNNNNCTCC	2 cut(s)	690, 720
Bsc4I	CCNNNNNNNGG	2 cut(s)	318, 620
Bse1I	ACTGG	3 cut(s)	352, 374, 704
Bse8I	GATNNNNATC	1 cut(s)	534
BseBI	CCWGG	1 cut(s)	639
BseDI	CCNNGG	1 cut(s)	52
BseGI	GGATG	2 cut(s)	379, 764
BseJI	GATNNNNATC	1 cut(s)	534
BseLI	CCNNNNNNNGG	2 cut(s)	318, 620
BseMII	CTCAG	3 cut(s)	110, 720, 876
BseNI	ACTGG	3 cut(s)	352, 374, 704
BseX3I	CGGCCG	1 cut(s)	299
BseXI	GCAGC	5 cut(s)	80, 238, 469, 802, 868
Bsh1236I	CGCG	1 cut(s)	54
Bsh1285I	CGRYCG	1 cut(s)	302
BshFI	GGCC	3 cut(s)	193, 301, 392
BshNI	GGYRCC	1 cut(s)	164
BsiEI	CGRYCG	1 cut(s)	302
BsiSI	CCGG	3 cut(s)	103, 162, 312
BslFI	GGGAC	1 cut(s)	309
BslI	CCNNNNNNNGG	2 cut(s)	318, 620
BsmAI	GTCTC	2 cut(s)	345, 828
BsmBI	CGTCTC	2 cut(s)	345, 828
BsmFI	GGGAC	1 cut(s)	309
BsmI	GAATGC	1 cut(s)	484
BsnI	GGCC	3 cut(s)	193, 301, 392
Bsp143I	GATC	4 cut(s)	325, 516, 688, 769
BspACI	CCGC	3 cut(s)	52, 54, 254
BspANI	GGCC	3 cut(s)	193, 301, 392
BspCNI	CTCAG	3 cut(s)	109, 721, 877
BspFNI	CGCG	1 cut(s)	54
BspLI	GGNNCC	4 cut(s)	166, 391, 501, 783
BspMAI	CTGCAG	1 cut(s)	400
BspMI	ACCTGC	2 cut(s)	111, 279
BspPI	GGATC	1 cut(s)	696
BspT107I	GGYRCC	1 cut(s)	164
BsrI	ACTGG	3 cut(s)	352, 374, 704
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	4 cut(s)	325, 516, 688, 769
BssNI	GRCGYC	2 cut(s)	5, 165
Bst2UI	CCWGG	1 cut(s)	639
Bst6I	CTCTTC	1 cut(s)	762
BstACI	GRCGYC	2 cut(s)	5, 165
BstAPI	GCANNNNNTGC	2 cut(s)	815, 824
BstBAI	YACGTR	1 cut(s)	722
BstC8I	GCNNGC	2 cut(s)	73, 136
BstDEI	CTNAG	3 cut(s)	96, 729, 885
BstDSI	CCRYGG	1 cut(s)	52
BstF5I	GGATG	2 cut(s)	379, 764
BstFNI	CGCG	1 cut(s)	54
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	4 cut(s)	328, 519, 691, 772
BstMAI	GTCTC	2 cut(s)	345, 828
BstMBI	GATC	4 cut(s)	325, 516, 688, 769
BstMCI	CGRYCG	1 cut(s)	302
BstMWI	GCNNNNNNNGC	4 cut(s)	144, 479, 815, 824
BstNI	CCWGG	1 cut(s)	639
BstSCI	CCNGG	2 cut(s)	101, 637
BstSFI	CTRYAG	1 cut(s)	396
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	5 cut(s)	80, 238, 469, 802, 868
BstX2I	RGATCY	1 cut(s)	688
BstXI	CCANNNNNNTGG	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	688
BstZI	CGGCCG	1 cut(s)	299
BsuI	GTATCC	1 cut(s)	557
BsuRI	GGCC	3 cut(s)	193, 301, 392
BtgI	CCRYGG	1 cut(s)	52
BtsCI	GGATG	2 cut(s)	379, 764
BtsI	GCAGTG	3 cut(s)	393, 405, 433
BtsIMutI	CAGTG	5 cut(s)	115, 393, 405, 433, 711
BveI	ACCTGC	2 cut(s)	111, 279
Cac8I	GCNNGC	2 cut(s)	73, 136
CfoI	GCGC	1 cut(s)	167
Cfr13I	GGNCC	2 cut(s)	56, 390
Cfr42I	CCGCGG	1 cut(s)	55
CsiI	ACCWGGT	1 cut(s)	637
Csp6I	GTAC	3 cut(s)	124, 307, 380
CviAII	CATG	2 cut(s)	318, 527
CviQI	GTAC	3 cut(s)	124, 307, 380
DdeI	CTNAG	3 cut(s)	96, 729, 885
DinI	GGCGCC	1 cut(s)	166
DpnI	GATC	4 cut(s)	327, 518, 690, 771
DpnII	GATC	4 cut(s)	325, 516, 688, 769
EaeI	YGGCCR	1 cut(s)	299
EagI	CGGCCG	1 cut(s)	299
Eam1104I	CTCTTC	1 cut(s)	762
EarI	CTCTTC	1 cut(s)	762
EclXI	CGGCCG	1 cut(s)	299
Eco147I	AGGCCT	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	56
Eco52I	CGGCCG	1 cut(s)	299
EcoRI	GAATTC	1 cut(s)	714
EcoRII	CCWGG	1 cut(s)	637
EgeI	GGCGCC	1 cut(s)	166
EheI	GGCGCC	1 cut(s)	166
Esp3I	CGTCTC	2 cut(s)	345, 828
FaeI	CATG	2 cut(s)	321, 530
FalI	AAGNNNNNCTT	4 cut(s)	369, 401, 497, 529
FaqI	GGGAC	1 cut(s)	309
FatI	CATG	2 cut(s)	317, 526
FbaI	TGATCA	1 cut(s)	325
Fnu4HI	GCNGC	5 cut(s)	69, 252, 483, 816, 882
FokI	GGATG	2 cut(s)	386, 751
Fsp4HI	GCNGC	5 cut(s)	69, 252, 483, 816, 882
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	5 cut(s)	69, 252, 483, 816, 882
GsuI	CTGGAG	2 cut(s)	369, 642
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	3 cut(s)	193, 301, 392
HapII	CCGG	3 cut(s)	103, 162, 312
HhaI	GCGC	1 cut(s)	167
Hin1I	GRCGYC	2 cut(s)	5, 165
Hin1II	CATG	2 cut(s)	321, 530
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HinfI	GANTC	2 cut(s)	590, 679
HpaII	CCGG	3 cut(s)	103, 162, 312
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	4 cut(s)	99, 595, 693, 769
Hpy188III	TCNNGA	4 cut(s)	294, 514, 561, 621
Hpy8I	GTNNAC	1 cut(s)	367
Hpy99I	CGWCG	2 cut(s)	10, 307
HpyAV	CCTTC	4 cut(s)	51, 69, 655, 883
HpyCH4IV	ACGT	5 cut(s)	5, 174, 305, 354, 721
HpyF10VI	GCNNNNNNNGC	4 cut(s)	144, 479, 815, 824
HpyF3I	CTNAG	3 cut(s)	96, 729, 885
HpySE526I	ACGT	5 cut(s)	5, 174, 305, 354, 721
Hsp92I	GRCGYC	2 cut(s)	5, 165
Hsp92II	CATG	2 cut(s)	321, 530
HspAI	GCGC	1 cut(s)	165
KasI	GGCGCC	1 cut(s)	164
Ksp22I	TGATCA	1 cut(s)	325
KspI	CCGCGG	1 cut(s)	55
Kzo9I	GATC	4 cut(s)	325, 516, 688, 769
LmnI	GCTCC	1 cut(s)	787
Lsp1109I	GCAGC	5 cut(s)	80, 238, 469, 802, 868
LweI	GCATC	2 cut(s)	429, 773
MabI	ACCWGGT	1 cut(s)	637
MaeII	ACGT	5 cut(s)	5, 174, 305, 354, 721
MalI	GATC	4 cut(s)	327, 518, 690, 771
MboI	GATC	4 cut(s)	325, 516, 688, 769
MboII	GAAGA	3 cut(s)	36, 749, 838
MfeI	CAATTG	1 cut(s)	411
MflI	RGATCY	1 cut(s)	688
MluCI	AATT	4 cut(s)	157, 411, 714, 870
Mly113I	GGCGCC	1 cut(s)	165
MroXI	GAANNNNTTC	2 cut(s)	381, 714
MseI	TTAA	5 cut(s)	114, 332, 450, 632, 873
MslI	CAYNNNNRTG	1 cut(s)	398
MspA1I	CMGCKG	1 cut(s)	54
MspI	CCGG	3 cut(s)	103, 162, 312
MspR9I	CCNGG	2 cut(s)	103, 639
MunI	CAATTG	1 cut(s)	411
Mva1269I	GAATGC	1 cut(s)	484
MvaI	CCWGG	1 cut(s)	639
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	4 cut(s)	144, 479, 815, 824
NarI	GGCGCC	1 cut(s)	165
NciI	CCSGG	1 cut(s)	103
NdeII	GATC	4 cut(s)	325, 516, 688, 769
NlaIII	CATG	2 cut(s)	321, 530
NlaIV	GGNNCC	4 cut(s)	166, 391, 501, 783
OliI	CACNNNNGTG	1 cut(s)	398
PceI	AGGCCT	1 cut(s)	193
PcsI	WCGNNNNNNNCGW	1 cut(s)	299
PctI	GAATGC	1 cut(s)	484
PdmI	GAANNNNTTC	2 cut(s)	381, 714
PfeI	GAWTC	2 cut(s)	590, 679
PkrI	GCNGC	5 cut(s)	70, 253, 484, 817, 883
PluTI	GGCGCC	1 cut(s)	168
Ppu21I	YACGTR	1 cut(s)	722
PshBI	ATTAAT	1 cut(s)	450
Psp6I	CCWGG	1 cut(s)	637
PspGI	CCWGG	1 cut(s)	637
PspN4I	GGNNCC	4 cut(s)	166, 391, 501, 783
PspPI	GGNCC	2 cut(s)	56, 390
PstI	CTGCAG	1 cut(s)	400
PsuI	RGATCY	1 cut(s)	688
RsaI	GTAC	3 cut(s)	125, 308, 381
RsaNI	GTAC	3 cut(s)	124, 307, 380
RseI	CAYNNNNRTG	1 cut(s)	398
SacII	CCGCGG	1 cut(s)	55
SaqAI	TTAA	5 cut(s)	114, 332, 450, 632, 873
SatI	GCNGC	5 cut(s)	69, 252, 483, 816, 882
Sau3AI	GATC	4 cut(s)	325, 516, 688, 769
Sau96I	GGNCC	2 cut(s)	56, 390
ScaI	AGTACT	1 cut(s)	381
ScrFI	CCNGG	2 cut(s)	103, 639
SexAI	ACCWGGT	1 cut(s)	637
SfaNI	GCATC	2 cut(s)	429, 773
SfcI	CTRYAG	1 cut(s)	396
SfoI	GGCGCC	1 cut(s)	166
Sfr303I	CCGCGG	1 cut(s)	55
SgrBI	CCGCGG	1 cut(s)	55
SinI	GGWCC	1 cut(s)	56
SmiMI	CAYNNNNRTG	1 cut(s)	398
Sse9I	AATT	4 cut(s)	157, 411, 714, 870
SseBI	AGGCCT	1 cut(s)	193
SsiI	CCGC	3 cut(s)	52, 54, 254
SspDI	GGCGCC	1 cut(s)	164
StuI	AGGCCT	1 cut(s)	193
StyD4I	CCNGG	2 cut(s)	101, 637
TaiI	ACGT	5 cut(s)	8, 177, 308, 357, 724
TaqI	TCGA	1 cut(s)	666
TasI	AATT	4 cut(s)	157, 411, 714, 870
TatI	WGTACW	1 cut(s)	379
TfiI	GAWTC	2 cut(s)	590, 679
Tru1I	TTAA	5 cut(s)	114, 332, 450, 632, 873
Tru9I	TTAA	5 cut(s)	114, 332, 450, 632, 873
TscAI	CASTG	5 cut(s)	115, 400, 405, 433, 711
TseI	GCWGC	5 cut(s)	68, 251, 482, 815, 881
TspDTI	ATGAA	4 cut(s)	306, 390, 546, 634
TspRI	CASTG	5 cut(s)	115, 400, 405, 433, 711
VpaK11BI	GGWCC	1 cut(s)	56
VspI	ATTAAT	1 cut(s)	450
XapI	RAATTY	1 cut(s)	714
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175
XmnI	GAANNNNTTC	2 cut(s)	381, 714
ZraI	GACGTC	1 cut(s)	6
ZrmI	AGTACT	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.