Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016160.1

Orthogroup ID

OG0012999

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 787

Gene Structure 787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016160.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 374 bp

atgacgtcgtttctgcacttccctgcaacttcctctcgtccttcttctctccgcggaccttccctcgcagctcgtcccaatcccacctcgctctctcagacccggttcagtgttaaatgcaggtacgcagaggcaggcgtaaagagcaaggacttcaattccggcgccatagacgttgtggctgatgtcaggcctgaacgggttgtggtattgggagggagtggctttgttggttctgctatatgtaaggctgcggtgtccaaaggcatagaggtcgtaggtgtgagcaggtcggggcggccgacgtactccggttcatggattgatcaggttaattgggtaccaggcaagttgcattcttcgattttcacgct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010287 GO:0016491 GO:0016651 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901004 GO:1901006 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAD_binding_10

Protein Analysis

125

Amino Acids

13.2

Weight (kDa)

10.21

Isoelectric Point (pI)

34.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32220
fragaria_vesca	FvH4_5g23050 FvH4_5g23050
malus_domestica	MD04G1103200.v1.1
pyrus_communis	pycom04g09830
rosa_chinensis	RchiOBHm_Chr7g0211771
rosa_laevigata	RLG00000002970
rosa_multiflora	Rmu_sc0014977.1_g000002 Rmu_sc0015845.1_g000001 Rmu_sc0016160.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247460
rosa_rugosa	Rorug07G0128500 Rorug07G0128500
rosa_samantha	Rh7AG261200 Rh7BG254700 Rh7CG277800 Rh7DG267800
rosa_wichuraiana	Rw7G022260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	8
Acc36I	ACCTGC	2 cut(s)	111, 279
Acc65I	GGTACC	1 cut(s)	340
AccB1I	GGYRCC	2 cut(s)	164, 340
AccII	CGCG	1 cut(s)	54
AciI	CCGC	4 cut(s)	52, 54, 254, 298
AcoI	YGGCCR	1 cut(s)	299
AcyI	GRCGYC	2 cut(s)	5, 165
AfaI	GTAC	3 cut(s)	125, 308, 342
AfiI	CCNNNNNNNGG	1 cut(s)	318
AgsI	TTSAA	1 cut(s)	157
AjnI	CCWGG	1 cut(s)	343
AluBI	AGCT	1 cut(s)	71
AluI	AGCT	1 cut(s)	71
AoxI	GGCC	2 cut(s)	191, 299
ApeKI	GCWGC	2 cut(s)	68, 251
Asp718I	GGTACC	1 cut(s)	340
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	56
AsuC2I	CCSGG	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	56
BanI	GGYRCC	2 cut(s)	164, 340
BbvI	GCAGC	2 cut(s)	80, 238
BcgI	CGANNNNNNTGC	2 cut(s)	256, 290
BciT130I	CCWGG	1 cut(s)	345
BclI	TGATCA	1 cut(s)	325
BcnI	CCSGG	1 cut(s)	103
BfoI	RGCGCY	1 cut(s)	168
BfuAI	ACCTGC	2 cut(s)	111, 279
BisI	GCNGC	3 cut(s)	69, 252, 299
BlsI	GCNGC	3 cut(s)	70, 253, 300
Bme1390I	CCNGG	2 cut(s)	103, 345
Bme18I	GGWCC	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	2 cut(s)	166, 342
BmrFI	CCNGG	2 cut(s)	103, 345
BpuMI	CCSGG	1 cut(s)	103
BsaHI	GRCGYC	2 cut(s)	5, 165
BsaJI	CCNNGG	1 cut(s)	52
BsaWI	WCCGGW	1 cut(s)	311
Bsc4I	CCNNNNNNNGG	1 cut(s)	318
BseBI	CCWGG	1 cut(s)	345
BseDI	CCNNGG	1 cut(s)	52
BseLI	CCNNNNNNNGG	1 cut(s)	318
BseMII	CTCAG	1 cut(s)	110
BseX3I	CGGCCG	1 cut(s)	299
BseXI	GCAGC	2 cut(s)	80, 238
Bsh1236I	CGCG	1 cut(s)	54
Bsh1285I	CGRYCG	1 cut(s)	302
BshFI	GGCC	2 cut(s)	193, 301
BshNI	GGYRCC	2 cut(s)	164, 340
BsiEI	CGRYCG	1 cut(s)	302
BsiSI	CCGG	3 cut(s)	103, 162, 312
BslFI	GGGAC	1 cut(s)	60
BslI	CCNNNNNNNGG	1 cut(s)	318
BsmFI	GGGAC	1 cut(s)	60
BsmI	GAATGC	1 cut(s)	355
BsnI	GGCC	2 cut(s)	193, 301
Bsp143I	GATC	1 cut(s)	325
BspACI	CCGC	4 cut(s)	52, 54, 254, 298
BspANI	GGCC	2 cut(s)	193, 301
BspCNI	CTCAG	1 cut(s)	109
BspFNI	CGCG	1 cut(s)	54
BspLI	GGNNCC	2 cut(s)	166, 342
BspMI	ACCTGC	2 cut(s)	111, 279
BspT107I	GGYRCC	2 cut(s)	164, 340
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	1 cut(s)	325
BssNI	GRCGYC	2 cut(s)	5, 165
Bst2UI	CCWGG	1 cut(s)	345
BstACI	GRCGYC	2 cut(s)	5, 165
BstC8I	GCNNGC	1 cut(s)	136
BstDEI	CTNAG	1 cut(s)	96
BstDSI	CCRYGG	1 cut(s)	52
BstFNI	CGCG	1 cut(s)	54
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	1 cut(s)	328
BstMBI	GATC	1 cut(s)	325
BstMCI	CGRYCG	1 cut(s)	302
BstMWI	GCNNNNNNNGC	1 cut(s)	144
BstNI	CCWGG	1 cut(s)	345
BstSCI	CCNGG	2 cut(s)	101, 343
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	2 cut(s)	80, 238
BstZI	CGGCCG	1 cut(s)	299
BsuRI	GGCC	2 cut(s)	193, 301
BtgI	CCRYGG	1 cut(s)	52
BtsIMutI	CAGTG	1 cut(s)	115
BveI	ACCTGC	2 cut(s)	111, 279
Cac8I	GCNNGC	1 cut(s)	136
CfoI	GCGC	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	56
Cfr42I	CCGCGG	1 cut(s)	55
Csp6I	GTAC	3 cut(s)	124, 307, 341
CviAII	CATG	1 cut(s)	318
CviJI	RGCY	6 cut(s)	71, 182, 193, 225, 251, 301
CviKI_1	RGCY	6 cut(s)	71, 182, 193, 225, 251, 301
CviQI	GTAC	3 cut(s)	124, 307, 341
DdeI	CTNAG	1 cut(s)	96
DinI	GGCGCC	1 cut(s)	166
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
EaeI	YGGCCR	1 cut(s)	299
EagI	CGGCCG	1 cut(s)	299
EclXI	CGGCCG	1 cut(s)	299
Eco147I	AGGCCT	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	56
Eco52I	CGGCCG	1 cut(s)	299
EcoRII	CCWGG	1 cut(s)	343
EgeI	GGCGCC	1 cut(s)	166
EheI	GGCGCC	1 cut(s)	166
FaeI	CATG	1 cut(s)	321
FaiI	YATR	5 cut(s)	170, 242, 244, 269, 319
FaqI	GGGAC	1 cut(s)	60
FatI	CATG	1 cut(s)	317
FbaI	TGATCA	1 cut(s)	325
Fnu4HI	GCNGC	3 cut(s)	69, 252, 299
Fsp4HI	GCNGC	3 cut(s)	69, 252, 299
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	3 cut(s)	69, 252, 299
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	2 cut(s)	193, 301
HapII	CCGG	3 cut(s)	103, 162, 312
HhaI	GCGC	1 cut(s)	167
Hin1I	GRCGYC	2 cut(s)	5, 165
Hin1II	CATG	1 cut(s)	321
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HpaII	CCGG	3 cut(s)	103, 162, 312
Hpy188I	TCNGA	1 cut(s)	99
Hpy99I	CGWCG	2 cut(s)	10, 307
HpyAV	CCTTC	2 cut(s)	51, 69
HpyCH4IV	ACGT	3 cut(s)	5, 174, 305
HpyCH4V	TGCA	4 cut(s)	16, 26, 120, 355
HpyF10VI	GCNNNNNNNGC	1 cut(s)	144
HpyF3I	CTNAG	1 cut(s)	96
HpySE526I	ACGT	3 cut(s)	5, 174, 305
Hsp92I	GRCGYC	2 cut(s)	5, 165
Hsp92II	CATG	1 cut(s)	321
HspAI	GCGC	1 cut(s)	165
KasI	GGCGCC	1 cut(s)	164
KpnI	GGTACC	1 cut(s)	344
Ksp22I	TGATCA	1 cut(s)	325
KspI	CCGCGG	1 cut(s)	55
Kzo9I	GATC	1 cut(s)	325
Lsp1109I	GCAGC	2 cut(s)	80, 238
MaeII	ACGT	3 cut(s)	5, 174, 305
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MboII	GAAGA	2 cut(s)	36, 351
MluCI	AATT	2 cut(s)	157, 334
Mly113I	GGCGCC	1 cut(s)	165
MnlI	CCTC	6 cut(s)	43, 74, 97, 124, 209, 265
MseI	TTAA	2 cut(s)	114, 333
MspA1I	CMGCKG	1 cut(s)	54
MspI	CCGG	3 cut(s)	103, 162, 312
MspR9I	CCNGG	2 cut(s)	103, 345
Mva1269I	GAATGC	1 cut(s)	355
MvaI	CCWGG	1 cut(s)	345
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	1 cut(s)	144
NarI	GGCGCC	1 cut(s)	165
NciI	CCSGG	1 cut(s)	103
NdeII	GATC	1 cut(s)	325
NlaIII	CATG	1 cut(s)	321
NlaIV	GGNNCC	2 cut(s)	166, 342
PceI	AGGCCT	1 cut(s)	193
PcsI	WCGNNNNNNNCGW	1 cut(s)	299
PctI	GAATGC	1 cut(s)	355
PkrI	GCNGC	3 cut(s)	70, 253, 300
PluTI	GGCGCC	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	343
PspGI	CCWGG	1 cut(s)	343
PspN4I	GGNNCC	2 cut(s)	166, 342
PspPI	GGNCC	1 cut(s)	56
RsaI	GTAC	3 cut(s)	125, 308, 342
RsaNI	GTAC	3 cut(s)	124, 307, 341
SacII	CCGCGG	1 cut(s)	55
SaqAI	TTAA	2 cut(s)	114, 333
SatI	GCNGC	3 cut(s)	69, 252, 299
Sau3AI	GATC	1 cut(s)	325
Sau96I	GGNCC	1 cut(s)	56
ScrFI	CCNGG	2 cut(s)	103, 345
SfoI	GGCGCC	1 cut(s)	166
Sfr303I	CCGCGG	1 cut(s)	55
SgrBI	CCGCGG	1 cut(s)	55
SinI	GGWCC	1 cut(s)	56
Sse9I	AATT	2 cut(s)	157, 334
SseBI	AGGCCT	1 cut(s)	193
SsiI	CCGC	4 cut(s)	52, 54, 254, 298
SspDI	GGCGCC	1 cut(s)	164
StuI	AGGCCT	1 cut(s)	193
StyD4I	CCNGG	2 cut(s)	101, 343
TaiI	ACGT	3 cut(s)	8, 177, 308
TaqI	TCGA	1 cut(s)	362
TasI	AATT	2 cut(s)	157, 334
TauI	GCSGC	1 cut(s)	301
Tru1I	TTAA	2 cut(s)	114, 333
Tru9I	TTAA	2 cut(s)	114, 333
TscAI	CASTG	1 cut(s)	115
TseI	GCWGC	2 cut(s)	68, 251
TspDTI	ATGAA	1 cut(s)	306
TspRI	CASTG	1 cut(s)	115
VpaK11BI	GGWCC	1 cut(s)	56
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.