Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0012999

Physical Location & Seq

Genomic Coordinates Reverse (-)

10122864 .. 10125868

Gene Structure 3005 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0128500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGCAGATTAAGGAAACGGCTCGTCGTTATATAAGAGACACAGCAGGAGTAGTACTGCTTCTGATTTCTGAACAAAGAATCAGAAGGACGATGAGACCTGAAATCTTGTTGTTTGGAGACTCGATAACAGAGCAGTCCTTCCAATTAGGAGGCTGGGGTGCCGCTCTTGCTGACACCTATTCTCGCAAGGCTGATGTCAAAGTTCGTGGCTATGGTGGGTACAACACCAGATGGGCGCTGTTCTTGTTGCATCAGATCTTTCCTCTGGATTCCAGAAAACCTCCTGCTGCTGCCACAATTTTCTTTGGGGCCAATGATGCAGCTATTTTGGGGAGAACAAGTGAACGGCAACATGTTCCTCTTGAAGAGTTCGAGGAGAATCTCAGAAAAATTGTTCTCCATTTGAAGGAGTGCAGTCACACAATTCTGATTGTGCTTATCACTCCACCGCCTGTGGATGAGGAAGGGCGTAATGAATATGCACGATCTTTGTATGGTGAGGATGCTAGGAAACTGCCAGAAAGGACAAATGAAGCAGCAGAAGTTTATGCAAAGAAGTGCCTTGAGCTAGCTGAGGAAATGGGTATCCGCTCCATCAATCTTTGGTCCAAGTTGCAGGAAACAGAGGGTTGGCAGAAGAAATTTCTAAGCGACGGGTTGCACCTAACACCAGAAGGCAATGCTGTAGTCCACCAAGAAGTTGTAAGAGTTTTCAAGGAAGCATGGTTTTCTGCTGACGAAATGCCTTATGATTTTCCTCACCACTCAGTAATTGATGGGGAGAACCCTGAGAAAGCTTTTGAGCAAAGATGCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010287 GO:0016491 GO:0016651 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901004 GO:1901006 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAD_binding_10

Protein Analysis

272

Amino Acids

31.13

Weight (kDa)

5.83

Isoelectric Point (pI)

47.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	35 - 233	1.5e-32	GDSL-like Lipase/Acylhydrolase
Lipase_GDSL_2	PF13472	37 - 228	5.8e-24	GDSL-like Lipase/Acylhydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32220
fragaria_vesca	FvH4_5g23050 FvH4_5g23050
malus_domestica	MD04G1103200.v1.1
pyrus_communis	pycom04g09830
rosa_chinensis	RchiOBHm_Chr7g0211771
rosa_laevigata	RLG00000002970
rosa_multiflora	Rmu_sc0014977.1_g000002 Rmu_sc0015845.1_g000001 Rmu_sc0016160.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247460
rosa_rugosa	Rorug07G0128500 Rorug07G0128500
rosa_samantha	Rh7AG261200 Rh7BG254700 Rh7CG277800 Rh7DG267800
rosa_wichuraiana	Rw7G022260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	158
AccBSI	CCGCTC	2 cut(s)	164, 591
AciI	CCGC	3 cut(s)	162, 449, 589
AcsI	RAATTY	1 cut(s)	641
AfaI	GTAC	2 cut(s)	54, 221
AfiI	CCNNNNNNNGG	1 cut(s)	406
AflIII	ACRYGT	1 cut(s)	352
AgsI	TTSAA	3 cut(s)	365, 406, 715
AluBI	AGCT	4 cut(s)	323, 568, 572, 797
AluI	AGCT	4 cut(s)	323, 568, 572, 797
Alw26I	GTCTC	3 cut(s)	30, 88, 111
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	4 cut(s)	287, 290, 320, 536
ApoI	RAATTY	1 cut(s)	641
AspLEI	GCGC	1 cut(s)	238
AspS9I	GGNCC	2 cut(s)	309, 606
AsuHPI	GGTGA	2 cut(s)	509, 752
AsuNHI	GCTAGC	1 cut(s)	568
AvaII	GGWCC	1 cut(s)	606
BanI	GGYRCC	1 cut(s)	158
BarI	GAAGNNNNNNTAC	2 cut(s)	42, 74
BbvCI	CCTCAGC	1 cut(s)	573
BbvI	GCAGC	4 cut(s)	274, 277, 332, 548
BccI	CCATC	3 cut(s)	225, 602, 770
BceAI	ACGGC	2 cut(s)	33, 362
BciVI	GTATCC	1 cut(s)	596
BcoDI	GTCTC	3 cut(s)	30, 88, 111
BfaI	CTAG	2 cut(s)	507, 569
BfmI	CTRYAG	1 cut(s)	684
BfoI	RGCGCY	1 cut(s)	239
BfuI	GTATCC	1 cut(s)	596
BglII	AGATCT	1 cut(s)	255
BisI	GCNGC	5 cut(s)	162, 288, 291, 321, 537
BlsI	GCNGC	5 cut(s)	163, 289, 292, 322, 538
BmcAI	AGTACT	1 cut(s)	54
Bme18I	GGWCC	1 cut(s)	606
BmgT120I	GGNCC	2 cut(s)	309, 606
BmiI	GGNNCC	2 cut(s)	160, 310
BmsI	GCATC	4 cut(s)	259, 307, 493, 800
BmtI	GCTAGC	1 cut(s)	572
Bpu10I	CCTNAGC	1 cut(s)	573
BpuEI	CTTGAG	1 cut(s)	584
BsaI	GGTCTC	1 cut(s)	88
BsaXI	ACNNNNNCTCC	2 cut(s)	325, 355
Bsc4I	CCNNNNNNNGG	1 cut(s)	406
Bse3DI	GCAATG	1 cut(s)	685
BseGI	GGATG	2 cut(s)	463, 508
BseLI	CCNNNNNNNGG	1 cut(s)	406
BseMI	GCAATG	1 cut(s)	685
BseMII	CTCAG	4 cut(s)	397, 564, 780, 780
BseRI	GAGGAG	1 cut(s)	389
BseXI	GCAGC	4 cut(s)	274, 277, 332, 548
BseYI	CCCAGC	1 cut(s)	153
BsgI	GTGCAG	1 cut(s)	433
BshFI	GGCC	1 cut(s)	311
BshNI	GGYRCC	1 cut(s)	158
BslI	CCNNNNNNNGG	1 cut(s)	406
BsmAI	GTCTC	3 cut(s)	30, 88, 111
BsnI	GGCC	1 cut(s)	311
Bso31I	GGTCTC	1 cut(s)	88
Bsp143I	GATC	2 cut(s)	255, 485
BspACI	CCGC	3 cut(s)	162, 449, 589
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	4 cut(s)	396, 565, 779, 781
BspLI	GGNNCC	2 cut(s)	160, 310
BspOI	GCTAGC	1 cut(s)	572
BspT107I	GGYRCC	1 cut(s)	158
BspTNI	GGTCTC	1 cut(s)	88
BsrBI	CCGCTC	2 cut(s)	164, 591
BsrDI	GCAATG	1 cut(s)	685
BssMI	GATC	2 cut(s)	255, 485
Bst6I	CTCTTC	1 cut(s)	360
BstC8I	GCNNGC	1 cut(s)	570
BstDEI	CTNAG	5 cut(s)	383, 573, 647, 766, 789
BstF5I	GGATG	2 cut(s)	463, 508
BstH2I	RGCGCY	1 cut(s)	239
BstHHI	GCGC	1 cut(s)	238
BstKTI	GATC	2 cut(s)	258, 488
BstMAI	GTCTC	3 cut(s)	30, 88, 111
BstMBI	GATC	2 cut(s)	255, 485
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 317
BstNSI	RCATGY	1 cut(s)	356
BstSFI	CTRYAG	1 cut(s)	684
BstV1I	GCAGC	4 cut(s)	274, 277, 332, 548
BstX2I	RGATCY	1 cut(s)	255
BstYI	RGATCY	1 cut(s)	255
BsuI	GTATCC	1 cut(s)	596
BsuRI	GGCC	1 cut(s)	311
BtsCI	GGATG	2 cut(s)	463, 508
Cac8I	GCNNGC	1 cut(s)	570
CfoI	GCGC	1 cut(s)	238
Cfr13I	GGNCC	2 cut(s)	309, 606
Csp6I	GTAC	2 cut(s)	53, 220
CspCI	CAANNNNNGTGG	2 cut(s)	187, 222
CviAII	CATG	2 cut(s)	353, 723
CviJI	RGCY	9 cut(s)	20, 153, 191, 210, 311, 323, 568, 572, 797
CviKI_1	RGCY	9 cut(s)	20, 153, 191, 210, 311, 323, 568, 572, 797
CviQI	GTAC	2 cut(s)	53, 220
DdeI	CTNAG	5 cut(s)	383, 573, 647, 766, 789
DpnI	GATC	2 cut(s)	257, 487
DpnII	GATC	2 cut(s)	255, 485
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Eco31I	GGTCTC	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	606
EcoT22I	ATGCAT	1 cut(s)	815
FaeI	CATG	2 cut(s)	356, 726
FatI	CATG	2 cut(s)	352, 722
Fnu4HI	GCNGC	5 cut(s)	162, 288, 291, 321, 537
FokI	GGATG	2 cut(s)	470, 515
Fsp4HI	GCNGC	5 cut(s)	162, 288, 291, 321, 537
FspBI	CTAG	2 cut(s)	507, 569
GlaI	GCGC	1 cut(s)	237
GluI	GCNGC	5 cut(s)	162, 288, 291, 321, 537
GsaI	CCCAGC	1 cut(s)	157
HaeII	RGCGCY	1 cut(s)	239
HaeIII	GGCC	1 cut(s)	311
HhaI	GCGC	1 cut(s)	238
Hin1II	CATG	2 cut(s)	356, 726
Hin6I	GCGC	1 cut(s)	236
HinP1I	GCGC	1 cut(s)	236
HindIII	AAGCTT	1 cut(s)	795
HinfI	GANTC	4 cut(s)	78, 119, 269, 379
HphI	GGTGA	2 cut(s)	509, 752
Hpy166II	GTNNAC	2 cut(s)	344, 691
Hpy188I	TCNGA	6 cut(s)	63, 70, 83, 255, 386, 429
Hpy188III	TCNNGA	3 cut(s)	266, 273, 362
Hpy8I	GTNNAC	2 cut(s)	344, 691
Hpy99I	CGWCG	2 cut(s)	27, 656
HpyAV	CCTTC	5 cut(s)	78, 148, 400, 458, 668
HpyCH4V	TGCA	9 cut(s)	4, 250, 320, 414, 482, 551, 616, 661, 813
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 317
HpyF3I	CTNAG	5 cut(s)	383, 573, 647, 766, 789
Hsp92II	CATG	2 cut(s)	356, 726
HspAI	GCGC	1 cut(s)	236
Kzo9I	GATC	2 cut(s)	255, 485
LmnI	GCTCC	1 cut(s)	596
Lsp1109I	GCAGC	4 cut(s)	274, 277, 332, 548
LweI	GCATC	4 cut(s)	259, 307, 493, 800
MaeI	CTAG	2 cut(s)	507, 569
MaeIII	GTNAC	1 cut(s)	416
MalI	GATC	2 cut(s)	257, 487
MbiI	CCGCTC	2 cut(s)	164, 591
MboI	GATC	2 cut(s)	255, 485
MboII	GAAGA	2 cut(s)	377, 649
MflI	RGATCY	1 cut(s)	255
MluCI	AATT	6 cut(s)	143, 297, 390, 423, 641, 771
MlyI	GAGTC	1 cut(s)	113
Mph1103I	ATGCAT	1 cut(s)	815
MseI	TTAA	1 cut(s)	9
MwoI	GCNNNNNNNGC	2 cut(s)	167, 317
NdeII	GATC	2 cut(s)	255, 485
NheI	GCTAGC	1 cut(s)	568
NlaIII	CATG	2 cut(s)	356, 726
NlaIV	GGNNCC	2 cut(s)	160, 310
NmuCI	GTSAC	1 cut(s)	416
NsiI	ATGCAT	1 cut(s)	815
NspI	RCATGY	1 cut(s)	356
PciI	ACATGT	1 cut(s)	352
PfeI	GAWTC	3 cut(s)	78, 269, 379
PkrI	GCNGC	5 cut(s)	163, 289, 292, 322, 538
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
PscI	ACATGT	1 cut(s)	352
PspFI	CCCAGC	1 cut(s)	153
PspN4I	GGNNCC	2 cut(s)	160, 310
PspPI	GGNCC	2 cut(s)	309, 606
PsuI	RGATCY	1 cut(s)	255
RsaI	GTAC	2 cut(s)	54, 221
RsaNI	GTAC	2 cut(s)	53, 220
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	5 cut(s)	162, 288, 291, 321, 537
Sau3AI	GATC	2 cut(s)	255, 485
Sau96I	GGNCC	2 cut(s)	309, 606
ScaI	AGTACT	1 cut(s)	54
SchI	GAGTC	1 cut(s)	113
SetI	ASST	8 cut(s)	100, 179, 283, 325, 570, 574, 666, 799
SfaNI	GCATC	4 cut(s)	259, 307, 493, 800
SfcI	CTRYAG	1 cut(s)	684
SinI	GGWCC	1 cut(s)	606
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
Sse9I	AATT	6 cut(s)	143, 297, 390, 423, 641, 771
SsiI	CCGC	3 cut(s)	162, 449, 589
SspMI	CTAG	2 cut(s)	507, 569
TaqI	TCGA	2 cut(s)	122, 372
TasI	AATT	6 cut(s)	143, 297, 390, 423, 641, 771
TatI	WGTACW	1 cut(s)	52
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	3 cut(s)	78, 269, 379
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	4 cut(s)	287, 290, 320, 536
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	2 cut(s)	489, 546
VpaK11BI	GGWCC	1 cut(s)	606
XapI	RAATTY	1 cut(s)	641
XceI	RCATGY	1 cut(s)	356
XspI	CTAG	2 cut(s)	507, 569
ZrmI	AGTACT	1 cut(s)	54
Zsp2I	ATGCAT	1 cut(s)	815

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.