Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0012999

Physical Location & Seq

Genomic Coordinates Reverse (-)

28593283 .. 28596939

Gene Structure 3657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG267800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGACGTCGTTTCTGCACTTCCCTGCAACTTCCTCTCTTCCTTCTTCTCTCCGCGGACCTTCCCTCGCAGCTCGCCCCAATCCCACGTCGCTCTCTCAGACCCGGTTCAGTGTTAAATGCAGGTACGCAGAGGCAGGCGTAAAGAGCGAGGACTTCAATTCCGGCGCCATAGACGTTGTGGCTGATGTCAGGCCTGAACGGGTTGTGGTATTGGGAGGGAGTGGCTTTGTTGGTTCTGCTATATGTAAGGCTGCGGTGTCCAAAGGCATAGAGGTCGTAGGTGTGAGCAGGTCGGGGCGGCCGACGTACTCCGGTTCATGGATTGATCAGGTTAATTGGGTACCAGGAGACGTTTTTTATGTAAATTGGGATGAAATACTTCTTGGGGCCACTGCAGTGGTTTCAACAATTGGTGGTTTTGGCAGCGAGGAACAGATGCAAAGGATTAATGGCGAGGCAAATATCATTGCTGTGAATGCTGCAAAGGAATATGGAGTTCCAAAGTTTGTCTTGATCTCGGTGCATGATTACAATCTACCTCCATTTCTACTTTCATCTGGATACTTCACAGGAAAGAGAAAAGCTGAATCAGAGGTTCTCTCCAAATATCCCAACTCTGGTAATACTGAACTTTTCTTTCTAACTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010287 GO:0016491 GO:0016651 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901004 GO:1901006 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAD_binding_10

Protein Analysis

216

Amino Acids

23.19

Weight (kDa)

6.74

Isoelectric Point (pI)

38.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	68 - 173	5.9e-08	NAD dependent epimerase/dehydratase family
NAD_binding_10	PF13460	72 - 178	3.7e-09	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32220
fragaria_vesca	FvH4_5g23050 FvH4_5g23050
malus_domestica	MD04G1103200.v1.1
pyrus_communis	pycom04g09830
rosa_chinensis	RchiOBHm_Chr7g0211771
rosa_laevigata	RLG00000002970
rosa_multiflora	Rmu_sc0014977.1_g000002 Rmu_sc0015845.1_g000001 Rmu_sc0016160.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247460
rosa_rugosa	Rorug07G0128500 Rorug07G0128500
rosa_samantha	Rh7AG261200 Rh7BG254700 Rh7CG277800 Rh7DG267800
rosa_wichuraiana	Rw7G022260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	8
Acc36I	ACCTGC	2 cut(s)	111, 279
Acc65I	GGTACC	1 cut(s)	340
AccB1I	GGYRCC	2 cut(s)	164, 340
AccII	CGCG	1 cut(s)	54
AciI	CCGC	4 cut(s)	52, 54, 254, 298
AcoI	YGGCCR	1 cut(s)	299
AcyI	GRCGYC	2 cut(s)	5, 165
AfaI	GTAC	3 cut(s)	125, 308, 342
AfiI	CCNNNNNNNGG	2 cut(s)	318, 617
AgsI	TTSAA	2 cut(s)	157, 405
AjiI	CACGTC	1 cut(s)	87
AjnI	CCWGG	1 cut(s)	343
AjuI	GAANNNNNNNTTGG	2 cut(s)	366, 398
AleI	CACNNNNGTG	1 cut(s)	395
AluBI	AGCT	2 cut(s)	71, 584
AluI	AGCT	2 cut(s)	71, 584
Alw26I	GTCTC	1 cut(s)	342
AoxI	GGCC	3 cut(s)	191, 299, 387
ApeKI	GCWGC	4 cut(s)	68, 251, 423, 479
AseI	ATTAAT	1 cut(s)	447
Asp700I	GAANNNNTTC	1 cut(s)	378
Asp718I	GGTACC	1 cut(s)	340
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	2 cut(s)	56, 387
AsuC2I	CCSGG	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	56
BanI	GGYRCC	2 cut(s)	164, 340
BbvI	GCAGC	4 cut(s)	80, 238, 435, 466
BcgI	CGANNNNNNTGC	2 cut(s)	256, 290
BciT130I	CCWGG	1 cut(s)	345
BciVI	GTATCC	1 cut(s)	554
BclI	TGATCA	1 cut(s)	325
BcnI	CCSGG	1 cut(s)	103
BcoDI	GTCTC	1 cut(s)	342
BfmI	CTRYAG	1 cut(s)	393
BfoI	RGCGCY	1 cut(s)	168
BfuAI	ACCTGC	2 cut(s)	111, 279
BfuI	GTATCC	1 cut(s)	554
BisI	GCNGC	5 cut(s)	69, 252, 299, 424, 480
BlsI	GCNGC	5 cut(s)	70, 253, 300, 425, 481
Bme1390I	CCNGG	2 cut(s)	103, 345
Bme18I	GGWCC	1 cut(s)	56
BmgBI	CACGTC	1 cut(s)	87
BmgT120I	GGNCC	2 cut(s)	56, 387
BmiI	GGNNCC	3 cut(s)	166, 342, 388
BmrFI	CCNGG	2 cut(s)	103, 345
BmsI	GCATC	1 cut(s)	426
BplI	GAGNNNNNCTC	2 cut(s)	584, 616
BpuMI	CCSGG	1 cut(s)	103
BsaBI	GATNNNNATC	1 cut(s)	531
BsaHI	GRCGYC	2 cut(s)	5, 165
BsaJI	CCNNGG	1 cut(s)	52
BsaWI	WCCGGW	1 cut(s)	311
Bsc4I	CCNNNNNNNGG	2 cut(s)	318, 617
Bse3DI	GCAATG	1 cut(s)	465
Bse8I	GATNNNNATC	1 cut(s)	531
BseBI	CCWGG	1 cut(s)	345
BseDI	CCNNGG	1 cut(s)	52
BseGI	GGATG	1 cut(s)	376
BseJI	GATNNNNATC	1 cut(s)	531
BseLI	CCNNNNNNNGG	2 cut(s)	318, 617
BseMI	GCAATG	1 cut(s)	465
BseMII	CTCAG	1 cut(s)	110
BseX3I	CGGCCG	1 cut(s)	299
BseXI	GCAGC	4 cut(s)	80, 238, 435, 466
Bsh1236I	CGCG	1 cut(s)	54
Bsh1285I	CGRYCG	1 cut(s)	302
BshFI	GGCC	3 cut(s)	193, 301, 389
BshNI	GGYRCC	2 cut(s)	164, 340
BsiEI	CGRYCG	1 cut(s)	302
BsiSI	CCGG	3 cut(s)	103, 162, 312
BslI	CCNNNNNNNGG	2 cut(s)	318, 617
BsmAI	GTCTC	1 cut(s)	342
BsmBI	CGTCTC	1 cut(s)	342
BsmI	GAATGC	1 cut(s)	481
BsnI	GGCC	3 cut(s)	193, 301, 389
Bsp143I	GATC	2 cut(s)	325, 513
BspACI	CCGC	4 cut(s)	52, 54, 254, 298
BspANI	GGCC	3 cut(s)	193, 301, 389
BspCNI	CTCAG	1 cut(s)	109
BspFNI	CGCG	1 cut(s)	54
BspLI	GGNNCC	3 cut(s)	166, 342, 388
BspMAI	CTGCAG	1 cut(s)	397
BspMI	ACCTGC	2 cut(s)	111, 279
BspT107I	GGYRCC	2 cut(s)	164, 340
BsrDI	GCAATG	1 cut(s)	465
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	2 cut(s)	325, 513
BssNI	GRCGYC	2 cut(s)	5, 165
Bst2UI	CCWGG	1 cut(s)	345
Bst6I	CTCTTC	1 cut(s)	42
BstACI	GRCGYC	2 cut(s)	5, 165
BstC8I	GCNNGC	2 cut(s)	73, 136
BstDEI	CTNAG	1 cut(s)	96
BstDSI	CCRYGG	1 cut(s)	52
BstF5I	GGATG	1 cut(s)	376
BstFNI	CGCG	1 cut(s)	54
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	2 cut(s)	328, 516
BstMAI	GTCTC	1 cut(s)	342
BstMBI	GATC	2 cut(s)	325, 513
BstMCI	CGRYCG	1 cut(s)	302
BstMWI	GCNNNNNNNGC	2 cut(s)	144, 476
BstNI	CCWGG	1 cut(s)	345
BstSCI	CCNGG	2 cut(s)	101, 343
BstSFI	CTRYAG	1 cut(s)	393
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	4 cut(s)	80, 238, 435, 466
BstXI	CCANNNNNNTGG	1 cut(s)	397
BstZI	CGGCCG	1 cut(s)	299
BsuI	GTATCC	1 cut(s)	554
BsuRI	GGCC	3 cut(s)	193, 301, 389
BtgI	CCRYGG	1 cut(s)	52
BtrI	CACGTC	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	376
BtsI	GCAGTG	2 cut(s)	390, 402
BtsIMutI	CAGTG	3 cut(s)	115, 390, 402
BveI	ACCTGC	2 cut(s)	111, 279
Cac8I	GCNNGC	2 cut(s)	73, 136
CfoI	GCGC	1 cut(s)	167
Cfr13I	GGNCC	2 cut(s)	56, 387
Cfr42I	CCGCGG	1 cut(s)	55
Csp6I	GTAC	3 cut(s)	124, 307, 341
CviAII	CATG	2 cut(s)	318, 524
CviJI	RGCY	8 cut(s)	71, 182, 193, 225, 251, 301, 389, 584
CviKI_1	RGCY	8 cut(s)	71, 182, 193, 225, 251, 301, 389, 584
CviQI	GTAC	3 cut(s)	124, 307, 341
DdeI	CTNAG	1 cut(s)	96
DinI	GGCGCC	1 cut(s)	166
DpnI	GATC	2 cut(s)	327, 515
DpnII	GATC	2 cut(s)	325, 513
EaeI	YGGCCR	1 cut(s)	299
EagI	CGGCCG	1 cut(s)	299
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
EclXI	CGGCCG	1 cut(s)	299
Eco147I	AGGCCT	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	56
Eco52I	CGGCCG	1 cut(s)	299
EcoRII	CCWGG	1 cut(s)	343
EgeI	GGCGCC	1 cut(s)	166
EheI	GGCGCC	1 cut(s)	166
Esp3I	CGTCTC	1 cut(s)	342
FaeI	CATG	2 cut(s)	321, 527
FaiI	YATR	8 cut(s)	170, 242, 244, 269, 319, 360, 492, 525
FalI	AAGNNNNNCTT	2 cut(s)	494, 526
FatI	CATG	2 cut(s)	317, 523
FbaI	TGATCA	1 cut(s)	325
Fnu4HI	GCNGC	5 cut(s)	69, 252, 299, 424, 480
FokI	GGATG	1 cut(s)	383
Fsp4HI	GCNGC	5 cut(s)	69, 252, 299, 424, 480
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	5 cut(s)	69, 252, 299, 424, 480
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	3 cut(s)	193, 301, 389
HapII	CCGG	3 cut(s)	103, 162, 312
HhaI	GCGC	1 cut(s)	167
Hin1I	GRCGYC	2 cut(s)	5, 165
Hin1II	CATG	2 cut(s)	321, 527
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HinfI	GANTC	1 cut(s)	587
HpaII	CCGG	3 cut(s)	103, 162, 312
Hpy188I	TCNGA	2 cut(s)	99, 592
Hpy188III	TCNNGA	2 cut(s)	511, 558
Hpy99I	CGWCG	3 cut(s)	10, 91, 307
HpyAV	CCTTC	2 cut(s)	51, 69
HpyCH4IV	ACGT	5 cut(s)	5, 86, 174, 305, 351
HpyCH4V	TGCA	7 cut(s)	16, 26, 120, 395, 439, 482, 523
HpyF10VI	GCNNNNNNNGC	2 cut(s)	144, 476
HpyF3I	CTNAG	1 cut(s)	96
HpySE526I	ACGT	5 cut(s)	5, 86, 174, 305, 351
Hsp92I	GRCGYC	2 cut(s)	5, 165
Hsp92II	CATG	2 cut(s)	321, 527
HspAI	GCGC	1 cut(s)	165
KasI	GGCGCC	1 cut(s)	164
KpnI	GGTACC	1 cut(s)	344
Ksp22I	TGATCA	1 cut(s)	325
KspI	CCGCGG	1 cut(s)	55
Kzo9I	GATC	2 cut(s)	325, 513
Lsp1109I	GCAGC	4 cut(s)	80, 238, 435, 466
LweI	GCATC	1 cut(s)	426
MaeII	ACGT	5 cut(s)	5, 86, 174, 305, 351
MalI	GATC	2 cut(s)	327, 515
MboI	GATC	2 cut(s)	325, 513
MboII	GAAGA	2 cut(s)	29, 36
MfeI	CAATTG	1 cut(s)	408
MluCI	AATT	4 cut(s)	157, 334, 364, 408
Mly113I	GGCGCC	1 cut(s)	165
MroXI	GAANNNNTTC	1 cut(s)	378
MseI	TTAA	3 cut(s)	114, 333, 447
MslI	CAYNNNNRTG	2 cut(s)	395, 470
MspA1I	CMGCKG	1 cut(s)	54
MspI	CCGG	3 cut(s)	103, 162, 312
MspR9I	CCNGG	2 cut(s)	103, 345
MunI	CAATTG	1 cut(s)	408
Mva1269I	GAATGC	1 cut(s)	481
MvaI	CCWGG	1 cut(s)	345
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	2 cut(s)	144, 476
NarI	GGCGCC	1 cut(s)	165
NciI	CCSGG	1 cut(s)	103
NdeII	GATC	2 cut(s)	325, 513
NlaIII	CATG	2 cut(s)	321, 527
NlaIV	GGNNCC	3 cut(s)	166, 342, 388
OliI	CACNNNNGTG	1 cut(s)	395
PceI	AGGCCT	1 cut(s)	193
PcsI	WCGNNNNNNNCGW	1 cut(s)	299
PctI	GAATGC	1 cut(s)	481
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	1 cut(s)	587
PkrI	GCNGC	5 cut(s)	70, 253, 300, 425, 481
PluTI	GGCGCC	1 cut(s)	168
PshBI	ATTAAT	1 cut(s)	447
Psp6I	CCWGG	1 cut(s)	343
PspGI	CCWGG	1 cut(s)	343
PspN4I	GGNNCC	3 cut(s)	166, 342, 388
PspPI	GGNCC	2 cut(s)	56, 387
PstI	CTGCAG	1 cut(s)	397
RsaI	GTAC	3 cut(s)	125, 308, 342
RsaNI	GTAC	3 cut(s)	124, 307, 341
RseI	CAYNNNNRTG	2 cut(s)	395, 470
SacII	CCGCGG	1 cut(s)	55
SaqAI	TTAA	3 cut(s)	114, 333, 447
SatI	GCNGC	5 cut(s)	69, 252, 299, 424, 480
Sau3AI	GATC	2 cut(s)	325, 513
Sau96I	GGNCC	2 cut(s)	56, 387
ScrFI	CCNGG	2 cut(s)	103, 345
SfaNI	GCATC	1 cut(s)	426
SfcI	CTRYAG	1 cut(s)	393
SfoI	GGCGCC	1 cut(s)	166
Sfr303I	CCGCGG	1 cut(s)	55
SgrBI	CCGCGG	1 cut(s)	55
SinI	GGWCC	1 cut(s)	56
SmiMI	CAYNNNNRTG	2 cut(s)	395, 470
Sse9I	AATT	4 cut(s)	157, 334, 364, 408
SseBI	AGGCCT	1 cut(s)	193
SsiI	CCGC	4 cut(s)	52, 54, 254, 298
SspDI	GGCGCC	1 cut(s)	164
StuI	AGGCCT	1 cut(s)	193
StyD4I	CCNGG	2 cut(s)	101, 343
TaiI	ACGT	5 cut(s)	8, 89, 177, 308, 354
TasI	AATT	4 cut(s)	157, 334, 364, 408
TauI	GCSGC	1 cut(s)	301
TfiI	GAWTC	1 cut(s)	587
Tru1I	TTAA	3 cut(s)	114, 333, 447
Tru9I	TTAA	3 cut(s)	114, 333, 447
TscAI	CASTG	3 cut(s)	115, 397, 402
TseI	GCWGC	4 cut(s)	68, 251, 423, 479
TspDTI	ATGAA	3 cut(s)	306, 387, 543
TspRI	CASTG	3 cut(s)	115, 397, 402
VpaK11BI	GGWCC	1 cut(s)	56
VspI	ATTAAT	1 cut(s)	447
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175
XmnI	GAANNNNTTC	1 cut(s)	378
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.