Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0012999

Physical Location & Seq

Genomic Coordinates Reverse (-)

23219586 .. 23223277

Gene Structure 3692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG254700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGACGTCGTTTCTGCACTTCCCTGCAACTTCCTCTCTTCCTTCTTCTCTCCGCGGACCTTCCCTCGCAGCTCGCCCCAATCCCACCTCGCTCTCTCAGACCCGGTTCAGTGTTAAATGCAGGTACGCAGAGGCAGGCGTAAAGAGCGAGGACTTCAATTCCGGCGCCATAGACGTTGTGGCTGATGTCAGGCCTGAACGGGTTGTGGTATTGGGAGGGAGTGGTTTCGTTGGTTCTGCTATATGTAAGGCTGCGGTGTCCAAAGGCATAGAGGTCGTAGGTGTGAGCAGGTCGGGGCGGCCGACGTACTCCGGTTCATGGATTGATCAGGTTAATTGGGTACCAGGAGACGTTTTTTATGTAAACTGGGATGAAGTACTTCTTGGGGCCACTGCAGTGGTTTCAACAATTGGTGGTTTTGGCAGCGAGGAACAGATGCAAAGGATTAATGGCGAGGCAAATGTTGTTGCTGTGAATGCTGCAAAGGAATATGGAGTTCTAAAGTTTGTCTTGATCTCGGTGCATGATTACAATCTACCTCCATTTCTACTTTCATCTGGATACTTCACAGGAAAGAGAAAAGCTGAATCAGAGGTTCTCTCCAAATATCCCAACTCTGGCGTTGTGTTAAGACCTGGTTTCATATATGGGAAAAGGAAGGTCGATGGATTTGAGATTCCTTTGGATCTGATAGGAGAACCAGTGGAAAGAATTCTACGTGCTACTGAGAGCTTTACCAAACCATTGAGTTCTCTTCCAGCATCCGATCTGCTCTTGGCTCCACCTGTTAGTGTTGATGATGTTGCGTTTGCTGCAATCAATGCAATAAGAGACGATGACTTCTTCGGCATTTTTACTATTGCACAAATTAAGGAAGCTGCTGAGAAGGTTAGGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010287 GO:0016491 GO:0016651 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901004 GO:1901006 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAD_binding_10

Protein Analysis

299

Amino Acids

32.07

Weight (kDa)

5.84

Isoelectric Point (pI)

34.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	68 - 223	2.7e-08	NAD dependent epimerase/dehydratase family
NAD_binding_10	PF13460	72 - 199	5.9e-09	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32220
fragaria_vesca	FvH4_5g23050 FvH4_5g23050
malus_domestica	MD04G1103200.v1.1
pyrus_communis	pycom04g09830
rosa_chinensis	RchiOBHm_Chr7g0211771
rosa_laevigata	RLG00000002970
rosa_multiflora	Rmu_sc0014977.1_g000002 Rmu_sc0015845.1_g000001 Rmu_sc0016160.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247460
rosa_rugosa	Rorug07G0128500 Rorug07G0128500
rosa_samantha	Rh7AG261200 Rh7BG254700 Rh7CG277800 Rh7DG267800
rosa_wichuraiana	Rw7G022260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	8
Acc36I	ACCTGC	2 cut(s)	111, 279
Acc65I	GGTACC	1 cut(s)	340
AccB1I	GGYRCC	2 cut(s)	164, 340
AccII	CGCG	1 cut(s)	54
AciI	CCGC	4 cut(s)	52, 54, 254, 298
AclWI	GGATC	1 cut(s)	693
AcoI	YGGCCR	1 cut(s)	299
AcsI	RAATTY	1 cut(s)	711
AcyI	GRCGYC	2 cut(s)	5, 165
AfaI	GTAC	4 cut(s)	125, 308, 342, 378
AfiI	CCNNNNNNNGG	2 cut(s)	318, 617
AgsI	TTSAA	2 cut(s)	157, 405
AjnI	CCWGG	2 cut(s)	343, 634
AjuI	GAANNNNNNNTTGG	2 cut(s)	366, 398
AleI	CACNNNNGTG	1 cut(s)	395
AluBI	AGCT	4 cut(s)	71, 584, 732, 878
AluI	AGCT	4 cut(s)	71, 584, 732, 878
Alw26I	GTCTC	2 cut(s)	342, 825
AlwI	GGATC	1 cut(s)	693
AoxI	GGCC	3 cut(s)	191, 299, 387
ApeKI	GCWGC	6 cut(s)	68, 251, 423, 479, 812, 878
ApoI	RAATTY	1 cut(s)	711
AseI	ATTAAT	1 cut(s)	447
Asp700I	GAANNNNTTC	2 cut(s)	378, 711
Asp718I	GGTACC	1 cut(s)	340
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	2 cut(s)	56, 387
AsuC2I	CCSGG	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	56
BanI	GGYRCC	2 cut(s)	164, 340
BbvI	GCAGC	6 cut(s)	80, 238, 435, 466, 799, 865
BccI	CCATC	1 cut(s)	659
BcgI	CGANNNNNNTGC	2 cut(s)	256, 290
BciT130I	CCWGG	2 cut(s)	345, 636
BciVI	GTATCC	1 cut(s)	554
BclI	TGATCA	1 cut(s)	325
BcnI	CCSGG	1 cut(s)	103
BcoDI	GTCTC	2 cut(s)	342, 825
BfmI	CTRYAG	1 cut(s)	393
BfoI	RGCGCY	1 cut(s)	168
BfuAI	ACCTGC	2 cut(s)	111, 279
BfuI	GTATCC	1 cut(s)	554
BisI	GCNGC	7 cut(s)	69, 252, 299, 424, 480, 813, 879
BlsI	GCNGC	7 cut(s)	70, 253, 300, 425, 481, 814, 880
BmcAI	AGTACT	1 cut(s)	378
Bme1390I	CCNGG	3 cut(s)	103, 345, 636
Bme18I	GGWCC	1 cut(s)	56
BmgT120I	GGNCC	2 cut(s)	56, 387
BmiI	GGNNCC	4 cut(s)	166, 342, 388, 780
BmrFI	CCNGG	3 cut(s)	103, 345, 636
BmrI	ACTGGG	1 cut(s)	376
BmsI	GCATC	2 cut(s)	426, 770
BmuI	ACTGGG	1 cut(s)	376
BplI	GAGNNNNNCTC	2 cut(s)	584, 616
BpuMI	CCSGG	1 cut(s)	103
BsaAI	YACGTR	1 cut(s)	719
BsaBI	GATNNNNATC	1 cut(s)	531
BsaHI	GRCGYC	2 cut(s)	5, 165
BsaJI	CCNNGG	1 cut(s)	52
BsaWI	WCCGGW	1 cut(s)	311
BsaXI	ACNNNNNCTCC	2 cut(s)	687, 717
Bsc4I	CCNNNNNNNGG	2 cut(s)	318, 617
Bse1I	ACTGG	2 cut(s)	371, 701
Bse8I	GATNNNNATC	1 cut(s)	531
BseBI	CCWGG	2 cut(s)	345, 636
BseDI	CCNNGG	1 cut(s)	52
BseGI	GGATG	2 cut(s)	376, 761
BseJI	GATNNNNATC	1 cut(s)	531
BseLI	CCNNNNNNNGG	2 cut(s)	318, 617
BseMII	CTCAG	3 cut(s)	110, 717, 873
BseNI	ACTGG	2 cut(s)	371, 701
BseX3I	CGGCCG	1 cut(s)	299
BseXI	GCAGC	6 cut(s)	80, 238, 435, 466, 799, 865
Bsh1236I	CGCG	1 cut(s)	54
Bsh1285I	CGRYCG	1 cut(s)	302
BshFI	GGCC	3 cut(s)	193, 301, 389
BshNI	GGYRCC	2 cut(s)	164, 340
BsiEI	CGRYCG	1 cut(s)	302
BsiSI	CCGG	3 cut(s)	103, 162, 312
BslI	CCNNNNNNNGG	2 cut(s)	318, 617
BsmAI	GTCTC	2 cut(s)	342, 825
BsmBI	CGTCTC	2 cut(s)	342, 825
BsmI	GAATGC	1 cut(s)	481
BsnI	GGCC	3 cut(s)	193, 301, 389
Bsp143I	GATC	4 cut(s)	325, 513, 685, 766
BspACI	CCGC	4 cut(s)	52, 54, 254, 298
BspANI	GGCC	3 cut(s)	193, 301, 389
BspCNI	CTCAG	3 cut(s)	109, 718, 874
BspFNI	CGCG	1 cut(s)	54
BspLI	GGNNCC	4 cut(s)	166, 342, 388, 780
BspMAI	CTGCAG	1 cut(s)	397
BspMI	ACCTGC	2 cut(s)	111, 279
BspPI	GGATC	1 cut(s)	693
BspT107I	GGYRCC	2 cut(s)	164, 340
BsrI	ACTGG	2 cut(s)	371, 701
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	4 cut(s)	325, 513, 685, 766
BssNI	GRCGYC	2 cut(s)	5, 165
Bst2UI	CCWGG	2 cut(s)	345, 636
Bst6I	CTCTTC	2 cut(s)	42, 759
BstACI	GRCGYC	2 cut(s)	5, 165
BstAPI	GCANNNNNTGC	1 cut(s)	821
BstBAI	YACGTR	1 cut(s)	719
BstC8I	GCNNGC	2 cut(s)	73, 136
BstDEI	CTNAG	3 cut(s)	96, 726, 882
BstDSI	CCRYGG	1 cut(s)	52
BstF5I	GGATG	2 cut(s)	376, 761
BstFNI	CGCG	1 cut(s)	54
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	4 cut(s)	328, 516, 688, 769
BstMAI	GTCTC	2 cut(s)	342, 825
BstMBI	GATC	4 cut(s)	325, 513, 685, 766
BstMCI	CGRYCG	1 cut(s)	302
BstMWI	GCNNNNNNNGC	4 cut(s)	144, 476, 812, 821
BstNI	CCWGG	2 cut(s)	345, 636
BstSCI	CCNGG	3 cut(s)	101, 343, 634
BstSFI	CTRYAG	1 cut(s)	393
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	6 cut(s)	80, 238, 435, 466, 799, 865
BstX2I	RGATCY	1 cut(s)	685
BstXI	CCANNNNNNTGG	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	685
BstZI	CGGCCG	1 cut(s)	299
BsuI	GTATCC	1 cut(s)	554
BsuRI	GGCC	3 cut(s)	193, 301, 389
BtgI	CCRYGG	1 cut(s)	52
BtsCI	GGATG	2 cut(s)	376, 761
BtsI	GCAGTG	2 cut(s)	390, 402
BtsIMutI	CAGTG	4 cut(s)	115, 390, 402, 708
BveI	ACCTGC	2 cut(s)	111, 279
Cac8I	GCNNGC	2 cut(s)	73, 136
CfoI	GCGC	1 cut(s)	167
Cfr13I	GGNCC	2 cut(s)	56, 387
Cfr42I	CCGCGG	1 cut(s)	55
CsiI	ACCWGGT	1 cut(s)	634
Csp6I	GTAC	4 cut(s)	124, 307, 341, 377
CviAII	CATG	2 cut(s)	318, 524
CviQI	GTAC	4 cut(s)	124, 307, 341, 377
DdeI	CTNAG	3 cut(s)	96, 726, 882
DinI	GGCGCC	1 cut(s)	166
DpnI	GATC	4 cut(s)	327, 515, 687, 768
DpnII	GATC	4 cut(s)	325, 513, 685, 766
EaeI	YGGCCR	1 cut(s)	299
EagI	CGGCCG	1 cut(s)	299
Eam1104I	CTCTTC	2 cut(s)	42, 759
EarI	CTCTTC	2 cut(s)	42, 759
EclXI	CGGCCG	1 cut(s)	299
Eco147I	AGGCCT	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	56
Eco52I	CGGCCG	1 cut(s)	299
EcoRI	GAATTC	1 cut(s)	711
EcoRII	CCWGG	2 cut(s)	343, 634
EgeI	GGCGCC	1 cut(s)	166
EheI	GGCGCC	1 cut(s)	166
Esp3I	CGTCTC	2 cut(s)	342, 825
FaeI	CATG	2 cut(s)	321, 527
FalI	AAGNNNNNCTT	4 cut(s)	366, 398, 494, 526
FatI	CATG	2 cut(s)	317, 523
FbaI	TGATCA	1 cut(s)	325
Fnu4HI	GCNGC	7 cut(s)	69, 252, 299, 424, 480, 813, 879
FokI	GGATG	2 cut(s)	383, 748
Fsp4HI	GCNGC	7 cut(s)	69, 252, 299, 424, 480, 813, 879
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	7 cut(s)	69, 252, 299, 424, 480, 813, 879
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	3 cut(s)	193, 301, 389
HapII	CCGG	3 cut(s)	103, 162, 312
HhaI	GCGC	1 cut(s)	167
Hin1I	GRCGYC	2 cut(s)	5, 165
Hin1II	CATG	2 cut(s)	321, 527
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HinfI	GANTC	2 cut(s)	587, 676
HpaII	CCGG	3 cut(s)	103, 162, 312
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	4 cut(s)	99, 592, 690, 766
Hpy188III	TCNNGA	2 cut(s)	511, 558
Hpy8I	GTNNAC	1 cut(s)	364
Hpy99I	CGWCG	2 cut(s)	10, 307
HpyAV	CCTTC	4 cut(s)	51, 69, 652, 880
HpyCH4IV	ACGT	5 cut(s)	5, 174, 305, 351, 718
HpyF10VI	GCNNNNNNNGC	4 cut(s)	144, 476, 812, 821
HpyF3I	CTNAG	3 cut(s)	96, 726, 882
HpySE526I	ACGT	5 cut(s)	5, 174, 305, 351, 718
Hsp92I	GRCGYC	2 cut(s)	5, 165
Hsp92II	CATG	2 cut(s)	321, 527
HspAI	GCGC	1 cut(s)	165
KasI	GGCGCC	1 cut(s)	164
KpnI	GGTACC	1 cut(s)	344
Ksp22I	TGATCA	1 cut(s)	325
KspI	CCGCGG	1 cut(s)	55
Kzo9I	GATC	4 cut(s)	325, 513, 685, 766
LmnI	GCTCC	1 cut(s)	784
Lsp1109I	GCAGC	6 cut(s)	80, 238, 435, 466, 799, 865
LweI	GCATC	2 cut(s)	426, 770
MabI	ACCWGGT	1 cut(s)	634
MaeII	ACGT	5 cut(s)	5, 174, 305, 351, 718
MalI	GATC	4 cut(s)	327, 515, 687, 768
MboI	GATC	4 cut(s)	325, 513, 685, 766
MboII	GAAGA	4 cut(s)	29, 36, 746, 835
MfeI	CAATTG	1 cut(s)	408
MflI	RGATCY	1 cut(s)	685
MluCI	AATT	5 cut(s)	157, 334, 408, 711, 867
Mly113I	GGCGCC	1 cut(s)	165
MroXI	GAANNNNTTC	2 cut(s)	378, 711
MseI	TTAA	5 cut(s)	114, 333, 447, 629, 870
MslI	CAYNNNNRTG	1 cut(s)	395
MspA1I	CMGCKG	1 cut(s)	54
MspI	CCGG	3 cut(s)	103, 162, 312
MspR9I	CCNGG	3 cut(s)	103, 345, 636
MunI	CAATTG	1 cut(s)	408
Mva1269I	GAATGC	1 cut(s)	481
MvaI	CCWGG	2 cut(s)	345, 636
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	4 cut(s)	144, 476, 812, 821
NarI	GGCGCC	1 cut(s)	165
NciI	CCSGG	1 cut(s)	103
NdeII	GATC	4 cut(s)	325, 513, 685, 766
NlaIII	CATG	2 cut(s)	321, 527
NlaIV	GGNNCC	4 cut(s)	166, 342, 388, 780
OliI	CACNNNNGTG	1 cut(s)	395
PceI	AGGCCT	1 cut(s)	193
PcsI	WCGNNNNNNNCGW	1 cut(s)	299
PctI	GAATGC	1 cut(s)	481
PdmI	GAANNNNTTC	2 cut(s)	378, 711
PfeI	GAWTC	2 cut(s)	587, 676
PkrI	GCNGC	7 cut(s)	70, 253, 300, 425, 481, 814, 880
PluTI	GGCGCC	1 cut(s)	168
Ppu21I	YACGTR	1 cut(s)	719
PshBI	ATTAAT	1 cut(s)	447
Psp6I	CCWGG	2 cut(s)	343, 634
PspGI	CCWGG	2 cut(s)	343, 634
PspN4I	GGNNCC	4 cut(s)	166, 342, 388, 780
PspPI	GGNCC	2 cut(s)	56, 387
PstI	CTGCAG	1 cut(s)	397
PsuI	RGATCY	1 cut(s)	685
RsaI	GTAC	4 cut(s)	125, 308, 342, 378
RsaNI	GTAC	4 cut(s)	124, 307, 341, 377
RseI	CAYNNNNRTG	1 cut(s)	395
SacII	CCGCGG	1 cut(s)	55
SaqAI	TTAA	5 cut(s)	114, 333, 447, 629, 870
SatI	GCNGC	7 cut(s)	69, 252, 299, 424, 480, 813, 879
Sau3AI	GATC	4 cut(s)	325, 513, 685, 766
Sau96I	GGNCC	2 cut(s)	56, 387
ScaI	AGTACT	1 cut(s)	378
ScrFI	CCNGG	3 cut(s)	103, 345, 636
SexAI	ACCWGGT	1 cut(s)	634
SfaNI	GCATC	2 cut(s)	426, 770
SfcI	CTRYAG	1 cut(s)	393
SfoI	GGCGCC	1 cut(s)	166
Sfr303I	CCGCGG	1 cut(s)	55
SgrBI	CCGCGG	1 cut(s)	55
SinI	GGWCC	1 cut(s)	56
SmiMI	CAYNNNNRTG	1 cut(s)	395
Sse9I	AATT	5 cut(s)	157, 334, 408, 711, 867
SseBI	AGGCCT	1 cut(s)	193
SsiI	CCGC	4 cut(s)	52, 54, 254, 298
SspDI	GGCGCC	1 cut(s)	164
StuI	AGGCCT	1 cut(s)	193
StyD4I	CCNGG	3 cut(s)	101, 343, 634
TaiI	ACGT	5 cut(s)	8, 177, 308, 354, 721
TaqI	TCGA	1 cut(s)	663
TasI	AATT	5 cut(s)	157, 334, 408, 711, 867
TatI	WGTACW	1 cut(s)	376
TauI	GCSGC	1 cut(s)	301
TfiI	GAWTC	2 cut(s)	587, 676
Tru1I	TTAA	5 cut(s)	114, 333, 447, 629, 870
Tru9I	TTAA	5 cut(s)	114, 333, 447, 629, 870
TscAI	CASTG	4 cut(s)	115, 397, 402, 708
TseI	GCWGC	6 cut(s)	68, 251, 423, 479, 812, 878
TspDTI	ATGAA	4 cut(s)	306, 387, 543, 631
TspRI	CASTG	4 cut(s)	115, 397, 402, 708
VpaK11BI	GGWCC	1 cut(s)	56
VspI	ATTAAT	1 cut(s)	447
XapI	RAATTY	1 cut(s)	711
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175
XmnI	GAANNNNTTC	2 cut(s)	378, 711
ZraI	GACGTC	1 cut(s)	6
ZrmI	AGTACT	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.