Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014977.1

Orthogroup ID

OG0012999

Physical Location & Seq

Genomic Coordinates Reverse (-)

7517 .. 8087

Gene Structure 571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014977.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atggctagatatactttccgtcttttccttgcaggagttccaaagtttgtcttgatctcggtgcatgattacaatctacctccatttctactttcatctggatacttcacaggaaagagaaaagctgaatcagaggttctctccaaatatcccaactctggcgttgtgttaagacccggtttcatatatgggaaaaggaaggtcgatggatttgagattcctttggatctgataggagaaccagtggaaagaattctacgtgctactgagagctttaccaaaccattgagttctcttccagcatccgatctgctcttggctccacctgttagtgttgatgatgttgcatttgctgcaatcaatgcaataagagacgatgacttcttcggcatttttactattgcacaaattaaggaagctgctgagaaggttagggtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010287 GO:0016491 GO:0016651 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901004 GO:1901006 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAD_binding_10

Protein Analysis

146

Amino Acids

16.17

Weight (kDa)

7.93

Isoelectric Point (pI)

35.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32220
fragaria_vesca	FvH4_5g23050 FvH4_5g23050
malus_domestica	MD04G1103200.v1.1
pyrus_communis	pycom04g09830
rosa_chinensis	RchiOBHm_Chr7g0211771
rosa_laevigata	RLG00000002970
rosa_multiflora	Rmu_sc0014977.1_g000002 Rmu_sc0015845.1_g000001 Rmu_sc0016160.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247460
rosa_rugosa	Rorug07G0128500 Rorug07G0128500
rosa_samantha	Rh7AG261200 Rh7BG254700 Rh7CG277800 Rh7DG267800
rosa_wichuraiana	Rw7G022260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	234
AcsI	RAATTY	1 cut(s)	252
AfiI	CCNNNNNNNGG	1 cut(s)	158
AluBI	AGCT	3 cut(s)	125, 273, 419
AluI	AGCT	3 cut(s)	125, 273, 419
Alw26I	GTCTC	1 cut(s)	366
AlwI	GGATC	1 cut(s)	234
ApeKI	GCWGC	2 cut(s)	353, 419
ApoI	RAATTY	1 cut(s)	252
Asp700I	GAANNNNTTC	1 cut(s)	252
AsuC2I	CCSGG	1 cut(s)	177
BbvI	GCAGC	2 cut(s)	340, 406
BccI	CCATC	1 cut(s)	200
BciVI	GTATCC	1 cut(s)	95
BcnI	CCSGG	1 cut(s)	177
BcoDI	GTCTC	1 cut(s)	366
BfaI	CTAG	1 cut(s)	6
BfuI	GTATCC	1 cut(s)	95
BisI	GCNGC	2 cut(s)	354, 420
BlsI	GCNGC	2 cut(s)	355, 421
Bme1390I	CCNGG	1 cut(s)	177
BmiI	GGNNCC	1 cut(s)	321
BmrFI	CCNGG	1 cut(s)	177
BmsI	GCATC	1 cut(s)	311
BplI	GAGNNNNNCTC	2 cut(s)	125, 157
BpuMI	CCSGG	1 cut(s)	177
BsaAI	YACGTR	1 cut(s)	260
BsaBI	GATNNNNATC	1 cut(s)	72
BsaXI	ACNNNNNCTCC	2 cut(s)	228, 258
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
Bse1I	ACTGG	1 cut(s)	242
Bse8I	GATNNNNATC	1 cut(s)	72
BseGI	GGATG	1 cut(s)	302
BseJI	GATNNNNATC	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseMII	CTCAG	2 cut(s)	258, 414
BseNI	ACTGG	1 cut(s)	242
BseXI	GCAGC	2 cut(s)	340, 406
BsiSI	CCGG	1 cut(s)	177
BslI	CCNNNNNNNGG	1 cut(s)	158
BsmAI	GTCTC	1 cut(s)	366
BsmBI	CGTCTC	1 cut(s)	366
Bsp143I	GATC	3 cut(s)	54, 226, 307
BspCNI	CTCAG	2 cut(s)	259, 415
BspLI	GGNNCC	1 cut(s)	321
BspPI	GGATC	1 cut(s)	234
BsrI	ACTGG	1 cut(s)	242
BssMI	GATC	3 cut(s)	54, 226, 307
Bst6I	CTCTTC	1 cut(s)	300
BstAPI	GCANNNNNTGC	2 cut(s)	353, 362
BstBAI	YACGTR	1 cut(s)	260
BstDEI	CTNAG	2 cut(s)	267, 423
BstF5I	GGATG	1 cut(s)	302
BstKTI	GATC	3 cut(s)	57, 229, 310
BstMAI	GTCTC	1 cut(s)	366
BstMBI	GATC	3 cut(s)	54, 226, 307
BstMWI	GCNNNNNNNGC	2 cut(s)	353, 362
BstSCI	CCNGG	1 cut(s)	175
BstV1I	GCAGC	2 cut(s)	340, 406
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BsuI	GTATCC	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	302
BtsIMutI	CAGTG	1 cut(s)	249
CviAII	CATG	1 cut(s)	65
CviJI	RGCY	5 cut(s)	5, 125, 273, 320, 419
CviKI_1	RGCY	5 cut(s)	5, 125, 273, 320, 419
DdeI	CTNAG	2 cut(s)	267, 423
DpnI	GATC	3 cut(s)	56, 228, 309
DpnII	GATC	3 cut(s)	54, 226, 307
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
EcoRI	GAATTC	1 cut(s)	252
Esp3I	CGTCTC	1 cut(s)	366
FaeI	CATG	1 cut(s)	68
FaiI	YATR	5 cut(s)	12, 66, 185, 187, 189
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FatI	CATG	1 cut(s)	64
Fnu4HI	GCNGC	2 cut(s)	354, 420
FokI	GGATG	1 cut(s)	289
Fsp4HI	GCNGC	2 cut(s)	354, 420
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	2 cut(s)	354, 420
HapII	CCGG	1 cut(s)	177
Hin1II	CATG	1 cut(s)	68
HinfI	GANTC	2 cut(s)	128, 217
HpaII	CCGG	1 cut(s)	177
Hpy188I	TCNGA	3 cut(s)	133, 231, 307
Hpy188III	TCNNGA	2 cut(s)	52, 99
HpyAV	CCTTC	2 cut(s)	193, 421
HpyCH4IV	ACGT	1 cut(s)	259
HpyCH4V	TGCA	6 cut(s)	32, 64, 347, 356, 365, 404
HpyF10VI	GCNNNNNNNGC	2 cut(s)	353, 362
HpyF3I	CTNAG	2 cut(s)	267, 423
HpySE526I	ACGT	1 cut(s)	259
Hsp92II	CATG	1 cut(s)	68
Kzo9I	GATC	3 cut(s)	54, 226, 307
LmnI	GCTCC	1 cut(s)	325
LpnPI	CCDG	8 cut(s)	18, 84, 96, 144, 190, 255, 312, 339
Lsp1109I	GCAGC	2 cut(s)	340, 406
LweI	GCATC	1 cut(s)	311
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	1 cut(s)	259
MalI	GATC	3 cut(s)	56, 228, 309
MboI	GATC	3 cut(s)	54, 226, 307
MboII	GAAGA	2 cut(s)	287, 376
MflI	RGATCY	1 cut(s)	226
MluCI	AATT	2 cut(s)	252, 408
MnlI	CCTC	2 cut(s)	90, 127
MroXI	GAANNNNTTC	1 cut(s)	252
MseI	TTAA	2 cut(s)	170, 411
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	177
MwoI	GCNNNNNNNGC	2 cut(s)	353, 362
NciI	CCSGG	1 cut(s)	177
NdeII	GATC	3 cut(s)	54, 226, 307
NlaIII	CATG	1 cut(s)	68
NlaIV	GGNNCC	1 cut(s)	321
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	2 cut(s)	128, 217
PkrI	GCNGC	2 cut(s)	355, 421
Ppu21I	YACGTR	1 cut(s)	260
PspN4I	GGNNCC	1 cut(s)	321
PsuI	RGATCY	1 cut(s)	226
SaqAI	TTAA	2 cut(s)	170, 411
SatI	GCNGC	2 cut(s)	354, 420
Sau3AI	GATC	3 cut(s)	54, 226, 307
ScrFI	CCNGG	1 cut(s)	177
SetI	ASST	9 cut(s)	82, 127, 138, 204, 262, 275, 328, 421, 432
SfaNI	GCATC	1 cut(s)	311
Sse9I	AATT	2 cut(s)	252, 408
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	1 cut(s)	175
TaiI	ACGT	1 cut(s)	262
TaqI	TCGA	1 cut(s)	204
TasI	AATT	2 cut(s)	252, 408
TfiI	GAWTC	2 cut(s)	128, 217
Tru1I	TTAA	2 cut(s)	170, 411
Tru9I	TTAA	2 cut(s)	170, 411
TscAI	CASTG	1 cut(s)	249
TseI	GCWGC	2 cut(s)	353, 419
TspDTI	ATGAA	2 cut(s)	84, 172
TspGWI	ACGGA	1 cut(s)	8
TspRI	CASTG	1 cut(s)	249
XapI	RAATTY	1 cut(s)	252
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.