Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015845.1

Orthogroup ID

OG0012999

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2424

Gene Structure 2424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015845.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 554 bp

gagacgttttttatgtaaattgggatgaagtacttcttggggccactgcagtggtttcaacaattggtggttttggtaacgaggaacagatgcaaaggattaatggcgaggcaaatattattgctgtgaatgctgcaaaggaatatggagttccaaagtttgtcttgatctcggtgcatgattacaatctacctccatttctactttcatctggatacttcacaggaaagagaaaagctgaatcagaggttctctccaaatatcccaactctggcgttgtgttaagacccggtttcatatatgggaaaaggaaggtcgatggatttgagattcctttggatctgataggagaaccagtggaaagaattctacgtgctactgagagctttaccaaaccattgagttctcttccagcatccgatctgctcttggctccacctgttagtgttgatgatgttgcatttgctgcaatcaatgcaataagagacgatgacttcttcggcatttttactattgcacaaattaaggaagctgctgagaaggttagggtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010287 GO:0016491 GO:0016651 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901004 GO:1901006 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAD_binding_10

Protein Analysis

183

Amino Acids

20.0

Weight (kDa)

4.87

Isoelectric Point (pI)

34.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32220
fragaria_vesca	FvH4_5g23050 FvH4_5g23050
malus_domestica	MD04G1103200.v1.1
pyrus_communis	pycom04g09830
rosa_chinensis	RchiOBHm_Chr7g0211771
rosa_laevigata	RLG00000002970
rosa_multiflora	Rmu_sc0014977.1_g000002 Rmu_sc0015845.1_g000001 Rmu_sc0016160.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247460
rosa_rugosa	Rorug07G0128500 Rorug07G0128500
rosa_samantha	Rh7AG261200 Rh7BG254700 Rh7CG277800 Rh7DG267800
rosa_wichuraiana	Rw7G022260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	347
AcsI	RAATTY	1 cut(s)	365
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	271
AgsI	TTSAA	1 cut(s)	59
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
AleI	CACNNNNGTG	1 cut(s)	49
AluBI	AGCT	3 cut(s)	238, 386, 532
AluI	AGCT	3 cut(s)	238, 386, 532
Alw26I	GTCTC	1 cut(s)	479
AlwI	GGATC	1 cut(s)	347
AoxI	GGCC	1 cut(s)	41
ApeKI	GCWGC	3 cut(s)	133, 466, 532
ApoI	RAATTY	1 cut(s)	365
AseI	ATTAAT	1 cut(s)	101
Asp700I	GAANNNNTTC	2 cut(s)	32, 365
AspS9I	GGNCC	1 cut(s)	41
AsuC2I	CCSGG	1 cut(s)	290
BbvI	GCAGC	3 cut(s)	120, 453, 519
BccI	CCATC	1 cut(s)	313
BciVI	GTATCC	1 cut(s)	208
BcnI	CCSGG	1 cut(s)	290
BcoDI	GTCTC	1 cut(s)	479
BfmI	CTRYAG	1 cut(s)	47
BfuI	GTATCC	1 cut(s)	208
BisI	GCNGC	3 cut(s)	134, 467, 533
BlsI	GCNGC	3 cut(s)	135, 468, 534
BmcAI	AGTACT	1 cut(s)	32
Bme1390I	CCNGG	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	41
BmiI	GGNNCC	2 cut(s)	42, 434
BmrFI	CCNGG	1 cut(s)	290
BmsI	GCATC	2 cut(s)	80, 424
BplI	GAGNNNNNCTC	2 cut(s)	238, 270
BpuMI	CCSGG	1 cut(s)	290
BsaAI	YACGTR	1 cut(s)	373
BsaBI	GATNNNNATC	1 cut(s)	185
BsaXI	ACNNNNNCTCC	2 cut(s)	341, 371
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse1I	ACTGG	1 cut(s)	355
Bse8I	GATNNNNATC	1 cut(s)	185
BseGI	GGATG	2 cut(s)	30, 415
BseJI	GATNNNNATC	1 cut(s)	185
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMII	CTCAG	2 cut(s)	371, 527
BseNI	ACTGG	1 cut(s)	355
BseXI	GCAGC	3 cut(s)	120, 453, 519
BshFI	GGCC	1 cut(s)	43
BsiSI	CCGG	1 cut(s)	290
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmAI	GTCTC	1 cut(s)	479
BsmBI	CGTCTC	1 cut(s)	479
BsmI	GAATGC	1 cut(s)	135
BsnI	GGCC	1 cut(s)	43
Bsp143I	GATC	3 cut(s)	167, 339, 420
BspANI	GGCC	1 cut(s)	43
BspCNI	CTCAG	2 cut(s)	372, 528
BspLI	GGNNCC	2 cut(s)	42, 434
BspMAI	CTGCAG	1 cut(s)	51
BspPI	GGATC	1 cut(s)	347
BsrI	ACTGG	1 cut(s)	355
BssMI	GATC	3 cut(s)	167, 339, 420
Bst6I	CTCTTC	1 cut(s)	413
BstAPI	GCANNNNNTGC	2 cut(s)	466, 475
BstBAI	YACGTR	1 cut(s)	373
BstDEI	CTNAG	2 cut(s)	380, 536
BstF5I	GGATG	2 cut(s)	30, 415
BstKTI	GATC	3 cut(s)	170, 342, 423
BstMAI	GTCTC	1 cut(s)	479
BstMBI	GATC	3 cut(s)	167, 339, 420
BstMWI	GCNNNNNNNGC	3 cut(s)	130, 466, 475
BstSCI	CCNGG	1 cut(s)	288
BstSFI	CTRYAG	1 cut(s)	47
BstV1I	GCAGC	3 cut(s)	120, 453, 519
BstX2I	RGATCY	1 cut(s)	339
BstXI	CCANNNNNNTGG	1 cut(s)	51
BstYI	RGATCY	1 cut(s)	339
BsuI	GTATCC	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	43
BtsCI	GGATG	2 cut(s)	30, 415
BtsI	GCAGTG	2 cut(s)	44, 56
BtsIMutI	CAGTG	3 cut(s)	44, 56, 362
Cfr13I	GGNCC	1 cut(s)	41
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	1 cut(s)	178
CviJI	RGCY	5 cut(s)	43, 238, 386, 433, 532
CviKI_1	RGCY	5 cut(s)	43, 238, 386, 433, 532
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	2 cut(s)	380, 536
DpnI	GATC	3 cut(s)	169, 341, 422
DpnII	GATC	3 cut(s)	167, 339, 420
Eam1104I	CTCTTC	1 cut(s)	413
EarI	CTCTTC	1 cut(s)	413
EcoRI	GAATTC	1 cut(s)	365
Esp3I	CGTCTC	1 cut(s)	479
FaeI	CATG	1 cut(s)	181
FaiI	YATR	6 cut(s)	14, 146, 179, 298, 300, 302
FalI	AAGNNNNNCTT	4 cut(s)	20, 52, 148, 180
FatI	CATG	1 cut(s)	177
Fnu4HI	GCNGC	3 cut(s)	134, 467, 533
FokI	GGATG	2 cut(s)	37, 402
Fsp4HI	GCNGC	3 cut(s)	134, 467, 533
GluI	GCNGC	3 cut(s)	134, 467, 533
HaeIII	GGCC	1 cut(s)	43
HapII	CCGG	1 cut(s)	290
Hin1II	CATG	1 cut(s)	181
HinfI	GANTC	2 cut(s)	241, 330
HpaII	CCGG	1 cut(s)	290
Hpy188I	TCNGA	3 cut(s)	246, 344, 420
Hpy188III	TCNNGA	2 cut(s)	165, 212
HpyAV	CCTTC	2 cut(s)	306, 534
HpyCH4IV	ACGT	2 cut(s)	5, 372
HpyCH4V	TGCA	8 cut(s)	49, 93, 136, 177, 460, 469, 478, 517
HpyF10VI	GCNNNNNNNGC	3 cut(s)	130, 466, 475
HpyF3I	CTNAG	2 cut(s)	380, 536
HpySE526I	ACGT	2 cut(s)	5, 372
Hsp92II	CATG	1 cut(s)	181
Kzo9I	GATC	3 cut(s)	167, 339, 420
LmnI	GCTCC	1 cut(s)	438
LpnPI	CCDG	7 cut(s)	197, 209, 257, 303, 368, 425, 452
Lsp1109I	GCAGC	3 cut(s)	120, 453, 519
LweI	GCATC	2 cut(s)	80, 424
MaeII	ACGT	2 cut(s)	5, 372
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	3 cut(s)	169, 341, 422
MboI	GATC	3 cut(s)	167, 339, 420
MboII	GAAGA	2 cut(s)	400, 489
MfeI	CAATTG	1 cut(s)	62
MflI	RGATCY	1 cut(s)	339
MluCI	AATT	4 cut(s)	18, 62, 365, 521
MnlI	CCTC	4 cut(s)	75, 102, 203, 240
MroXI	GAANNNNTTC	2 cut(s)	32, 365
MseI	TTAA	3 cut(s)	101, 283, 524
MslI	CAYNNNNRTG	1 cut(s)	49
MspI	CCGG	1 cut(s)	290
MspR9I	CCNGG	1 cut(s)	290
MunI	CAATTG	1 cut(s)	62
Mva1269I	GAATGC	1 cut(s)	135
MwoI	GCNNNNNNNGC	3 cut(s)	130, 466, 475
NciI	CCSGG	1 cut(s)	290
NdeII	GATC	3 cut(s)	167, 339, 420
NlaIII	CATG	1 cut(s)	181
NlaIV	GGNNCC	2 cut(s)	42, 434
OliI	CACNNNNGTG	1 cut(s)	49
PctI	GAATGC	1 cut(s)	135
PdmI	GAANNNNTTC	2 cut(s)	32, 365
PfeI	GAWTC	2 cut(s)	241, 330
PkrI	GCNGC	3 cut(s)	135, 468, 534
Ppu21I	YACGTR	1 cut(s)	373
PshBI	ATTAAT	1 cut(s)	101
PspN4I	GGNNCC	2 cut(s)	42, 434
PspPI	GGNCC	1 cut(s)	41
PstI	CTGCAG	1 cut(s)	51
PsuI	RGATCY	1 cut(s)	339
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
RseI	CAYNNNNRTG	1 cut(s)	49
SaqAI	TTAA	3 cut(s)	101, 283, 524
SatI	GCNGC	3 cut(s)	134, 467, 533
Sau3AI	GATC	3 cut(s)	167, 339, 420
Sau96I	GGNCC	1 cut(s)	41
ScaI	AGTACT	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	290
SfaNI	GCATC	2 cut(s)	80, 424
SfcI	CTRYAG	1 cut(s)	47
SmiMI	CAYNNNNRTG	1 cut(s)	49
Sse9I	AATT	4 cut(s)	18, 62, 365, 521
SspI	AATATT	1 cut(s)	117
StyD4I	CCNGG	1 cut(s)	288
TaiI	ACGT	2 cut(s)	8, 375
TaqI	TCGA	1 cut(s)	317
TasI	AATT	4 cut(s)	18, 62, 365, 521
TatI	WGTACW	1 cut(s)	30
TfiI	GAWTC	2 cut(s)	241, 330
Tru1I	TTAA	3 cut(s)	101, 283, 524
Tru9I	TTAA	3 cut(s)	101, 283, 524
TscAI	CASTG	3 cut(s)	51, 56, 362
TseI	GCWGC	3 cut(s)	133, 466, 532
TspDTI	ATGAA	3 cut(s)	41, 197, 285
TspRI	CASTG	3 cut(s)	51, 56, 362
VspI	ATTAAT	1 cut(s)	101
XapI	RAATTY	1 cut(s)	365
XmnI	GAANNNNTTC	2 cut(s)	32, 365
ZrmI	AGTACT	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.