Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0006264

Physical Location & Seq

Genomic Coordinates Reverse (-)

12915464 .. 12917285

Gene Structure 1822 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGTTTATTTCCAATTGGTTTGGTGCTATTATAGCAGAACAATATATTGTATTCGTTACCGTTTTTTTCATTTGGCCAGGAGTATGTGGACGTCGTCTTGGTGATGTGCAGAGTGATGCATTGTTCATATTGCTGGTTGAGAAGGATGCGGCTTTTATTCGACTGTCTGAGGATCGGTTTTACAATAGGTTTCCGTGTATTATTCTGACTGCGAAGGGGCAACCGGATGTAGCCACCAGGCTCTTTTTGAGGAAATTGAAGCTTGAATTGAAGCTACCGGTGCTCGCCCTTGTGGACAGTGATCCATATGGCCTGAAGATTTTATCCGTTTATGGTTGTGGGTCGAAGAACATGTCATATGACAGTGCGAATTTGACCACACCGGATATCAAATGGTTGGGGATACGGCCGAGTGATTTGGACAAGTACAAAATTCCAGAGCAGTGTAGGTTGACGATGACAGATCAGGATATCAAAACAGGGAAAGAAATGTTGGAGGAAGATTTTGTGAAGAAGAATCCAAAATGGGTTGAGGAGCTGACTCTTATGGTGAAGACCAAGCAGAAAGCAGAAATTCAGGCTCTGAGCGCATTCGGCTTCCAATATTTGACTCAGGTTTATTTGCCGCTAAAACTGCAGGAGCAGGATTGGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000729 GO:0001708 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0008544 GO:0009888 GO:0009913 GO:0009957 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0030154 GO:0030855 GO:0031974 GO:0031981 GO:0032502 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045165 GO:0046483 GO:0048285 GO:0048856 GO:0048869 GO:0050896 GO:0051321 GO:0051716 GO:0060429 GO:0061505 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

219

Amino Acids

25.13

Weight (kDa)

7.55

Isoelectric Point (pI)

31.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOP6A-Spo11_Toprim	PF21180	42 - 212	7.9e-68	Topoisomerase 6 subunit A/Spo11, Toprim domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0006264)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02820
fragaria_vesca	FvH4_1g22710 FvH4_1g22710 FvH4_1g22710 FvH4_1g22710 FvH4_2g03881 FvH4_6g05151
malus_domestica	MD04G1113900.v1.1
prunus_persica	Prupe.6G243200_v2.0.a1
pyrus_communis	pycom04g10130
rosa_chinensis	RchiOBHm_Chr2g0103111 RchiOBHm_Chr2g0116961 RchiOBHm_Chr3g0453711
rosa_laevigata	RLG00000018316
rosa_multiflora	Rmu_sc0003556.1_g000009 Rmu_sc0011969.1_g000014 Rmu_ssc0000238.1_g000021 Rmu_ssc0000238.1_g000022
rosa_roxburghii	Rroxscaffold_2G00126860 Rroxscaffold_6G00430630
rosa_rugosa	Rorug02G0209000.1
rosa_samantha	Rh2AG265100 Rh2BG276800 Rh2DG272500 Rh2DG291500
rosa_wichuraiana	Rw2G020900 Rw3G004140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	94
AciI	CCGC	2 cut(s)	149, 626
AclWI	GGATC	2 cut(s)	180, 296
AcoI	YGGCCR	2 cut(s)	74, 407
AcsI	RAATTY	3 cut(s)	370, 432, 573
AcuI	CTGAAG	1 cut(s)	335
AcyI	GRCGYC	1 cut(s)	91
AfaI	GTAC	1 cut(s)	428
AflIII	ACRYGT	1 cut(s)	351
AgeI	ACCGGT	1 cut(s)	277
AgsI	TTSAA	3 cut(s)	259, 266, 271
AjnI	CCWGG	2 cut(s)	76, 236
AjuI	GAANNNNNNNTTGG	2 cut(s)	476, 508
AluBI	AGCT	3 cut(s)	262, 274, 538
AluI	AGCT	3 cut(s)	262, 274, 538
Alw21I	GWGCWC	1 cut(s)	285
AlwI	GGATC	2 cut(s)	180, 296
AlwNI	CAGNNNCTG	1 cut(s)	583
AoxI	GGCC	3 cut(s)	74, 310, 407
ApoI	RAATTY	3 cut(s)	370, 432, 573
ArsI	GACNNNNNNTTYG	2 cut(s)	338, 370
AsiGI	ACCGGT	1 cut(s)	277
AspLEI	GCGC	1 cut(s)	590
AsuHPI	GGTGA	2 cut(s)	113, 562
BalI	TGGCCA	1 cut(s)	76
BbsI	GAAGAC	1 cut(s)	560
Bbv12I	GWGCWC	1 cut(s)	285
BceAI	ACGGC	1 cut(s)	422
BciT130I	CCWGG	2 cut(s)	78, 238
BciVI	GTATCC	1 cut(s)	396
BfmI	CTRYAG	1 cut(s)	635
BfuI	GTATCC	1 cut(s)	396
BisI	GCNGC	2 cut(s)	150, 626
BlsI	GCNGC	2 cut(s)	151, 627
Bme1390I	CCNGG	2 cut(s)	78, 238
BmrFI	CCNGG	2 cut(s)	78, 238
BmsI	GCATC	2 cut(s)	106, 136
BpiI	GAAGAC	1 cut(s)	560
BsaHI	GRCGYC	1 cut(s)	91
BsaWI	WCCGGW	3 cut(s)	223, 277, 382
Bse118I	RCCGGY	1 cut(s)	277
BseBI	CCWGG	2 cut(s)	78, 238
BseGI	GGATG	2 cut(s)	151, 232
BseMII	CTCAG	3 cut(s)	159, 575, 626
BseRI	GAGGAG	1 cut(s)	548
BseX3I	CGGCCG	1 cut(s)	407
BsgI	GTGCAG	1 cut(s)	128
Bsh1285I	CGRYCG	1 cut(s)	410
BshFI	GGCC	3 cut(s)	76, 312, 409
BshTI	ACCGGT	1 cut(s)	277
BsiEI	CGRYCG	1 cut(s)	410
BsiHKAI	GWGCWC	1 cut(s)	285
BsiSI	CCGG	3 cut(s)	224, 278, 383
BsmI	GAATGC	1 cut(s)	590
BsnI	GGCC	3 cut(s)	76, 312, 409
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	3 cut(s)	172, 301, 463
BspACI	CCGC	2 cut(s)	149, 626
BspANI	GGCC	3 cut(s)	76, 312, 409
BspCNI	CTCAG	3 cut(s)	160, 576, 625
BspMAI	CTGCAG	1 cut(s)	639
BspPI	GGATC	2 cut(s)	180, 296
BsrFI	RCCGGY	1 cut(s)	277
BssAI	RCCGGY	1 cut(s)	277
BssMI	GATC	3 cut(s)	172, 301, 463
BssNI	GRCGYC	1 cut(s)	91
Bst2UI	CCWGG	2 cut(s)	78, 238
Bst4CI	ACNGT	4 cut(s)	61, 165, 299, 365
BstACI	GRCGYC	1 cut(s)	91
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	3 cut(s)	168, 584, 612
BstF5I	GGATG	2 cut(s)	151, 232
BstHHI	GCGC	1 cut(s)	590
BstKTI	GATC	3 cut(s)	175, 304, 466
BstMBI	GATC	3 cut(s)	172, 301, 463
BstMCI	CGRYCG	1 cut(s)	410
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 280, 587, 594, 634
BstNI	CCWGG	2 cut(s)	78, 238
BstNSI	RCATGY	1 cut(s)	355
BstSCI	CCNGG	2 cut(s)	76, 236
BstSFI	CTRYAG	1 cut(s)	635
BstV2I	GAAGAC	1 cut(s)	560
BstZI	CGGCCG	1 cut(s)	407
BsuI	GTATCC	1 cut(s)	396
BsuRI	GGCC	3 cut(s)	76, 312, 409
BtsCI	GGATG	2 cut(s)	151, 232
BtsI	GCAGTG	1 cut(s)	449
BtsIMutI	CAGTG	3 cut(s)	304, 370, 449
Cac8I	GCNNGC	1 cut(s)	285
CaiI	CAGNNNCTG	1 cut(s)	583
CfoI	GCGC	1 cut(s)	590
Cfr10I	RCCGGY	1 cut(s)	277
Csp6I	GTAC	1 cut(s)	427
CspAI	ACCGGT	1 cut(s)	277
CviAII	CATG	1 cut(s)	352
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	3 cut(s)	168, 584, 612
DpnI	GATC	3 cut(s)	174, 303, 465
DpnII	GATC	3 cut(s)	172, 301, 463
EaeI	YGGCCR	2 cut(s)	74, 407
EagI	CGGCCG	1 cut(s)	407
EclXI	CGGCCG	1 cut(s)	407
Eco32I	GATATC	2 cut(s)	388, 472
Eco52I	CGGCCG	1 cut(s)	407
Eco57I	CTGAAG	1 cut(s)	335
EcoRII	CCWGG	2 cut(s)	76, 236
EcoRV	GATATC	2 cut(s)	388, 472
EcoT22I	ATGCAT	1 cut(s)	121
FaeI	CATG	1 cut(s)	355
FatI	CATG	1 cut(s)	351
FauNDI	CATATG	2 cut(s)	307, 358
Fnu4HI	GCNGC	2 cut(s)	150, 626
FokI	GGATG	2 cut(s)	158, 239
Fsp4HI	GCNGC	2 cut(s)	150, 626
GlaI	GCGC	1 cut(s)	589
GluI	GCNGC	2 cut(s)	150, 626
HaeIII	GGCC	3 cut(s)	76, 312, 409
HapII	CCGG	3 cut(s)	224, 278, 383
HhaI	GCGC	1 cut(s)	590
Hin1I	GRCGYC	1 cut(s)	91
Hin1II	CATG	1 cut(s)	355
Hin6I	GCGC	1 cut(s)	588
HinP1I	GCGC	1 cut(s)	588
HincII	GTYRAC	1 cut(s)	453
HindII	GTYRAC	1 cut(s)	453
HindIII	AAGCTT	1 cut(s)	260
HinfI	GANTC	3 cut(s)	517, 541, 610
HpaII	CCGG	3 cut(s)	224, 278, 383
HphI	GGTGA	2 cut(s)	113, 562
Hpy166II	GTNNAC	3 cut(s)	89, 295, 453
Hpy188I	TCNGA	3 cut(s)	169, 207, 585
Hpy188III	TCNNGA	2 cut(s)	437, 467
Hpy8I	GTNNAC	3 cut(s)	89, 295, 453
Hpy99I	CGWCG	1 cut(s)	96
HpyAV	CCTTC	2 cut(s)	136, 208
HpyCH4III	ACNGT	4 cut(s)	61, 165, 299, 365
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	3 cut(s)	109, 119, 637
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 280, 587, 594, 634
HpyF3I	CTNAG	3 cut(s)	168, 584, 612
HpySE526I	ACGT	1 cut(s)	91
Hsp92I	GRCGYC	1 cut(s)	91
Hsp92II	CATG	1 cut(s)	355
HspAI	GCGC	1 cut(s)	588
Kzo9I	GATC	3 cut(s)	172, 301, 463
LmnI	GCTCC	2 cut(s)	535, 640
LweI	GCATC	2 cut(s)	106, 136
MaeII	ACGT	1 cut(s)	91
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	3 cut(s)	174, 303, 465
MboI	GATC	3 cut(s)	172, 301, 463
MboII	GAAGA	6 cut(s)	328, 358, 512, 523, 526, 565
MfeI	CAATTG	1 cut(s)	13
MhlI	GDGCHC	1 cut(s)	285
MlsI	TGGCCA	1 cut(s)	76
MluCI	AATT	6 cut(s)	13, 254, 266, 370, 432, 573
MluNI	TGGCCA	1 cut(s)	76
MlyI	GAGTC	2 cut(s)	535, 604
MmeI	TCCRAC	1 cut(s)	474
MnlI	CCTC	4 cut(s)	163, 243, 490, 526
Mox20I	TGGCCA	1 cut(s)	76
Mph1103I	ATGCAT	1 cut(s)	121
MscI	TGGCCA	1 cut(s)	76
Msp20I	TGGCCA	1 cut(s)	76
MspI	CCGG	3 cut(s)	224, 278, 383
MspR9I	CCNGG	2 cut(s)	78, 238
MunI	CAATTG	1 cut(s)	13
Mva1269I	GAATGC	1 cut(s)	590
MvaI	CCWGG	2 cut(s)	78, 238
MwoI	GCNNNNNNNGC	5 cut(s)	32, 280, 587, 594, 634
NdeI	CATATG	2 cut(s)	307, 358
NdeII	GATC	3 cut(s)	172, 301, 463
NlaIII	CATG	1 cut(s)	355
NmeAIII	GCCGAG	1 cut(s)	435
NsiI	ATGCAT	1 cut(s)	121
NspI	RCATGY	1 cut(s)	355
PciI	ACATGT	1 cut(s)	351
PctI	GAATGC	1 cut(s)	590
PfeI	GAWTC	1 cut(s)	517
PflFI	GACNNNGTC	1 cut(s)	93
PinAI	ACCGGT	1 cut(s)	277
PkrI	GCNGC	2 cut(s)	151, 627
PleI	GAGTC	2 cut(s)	535, 604
PpsI	GAGTC	2 cut(s)	535, 604
PscI	ACATGT	1 cut(s)	351
Psp6I	CCWGG	2 cut(s)	76, 236
PspGI	CCWGG	2 cut(s)	76, 236
PstI	CTGCAG	1 cut(s)	639
PstNI	CAGNNNCTG	1 cut(s)	583
PsyI	GACNNNGTC	1 cut(s)	93
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
SatI	GCNGC	2 cut(s)	150, 626
Sau3AI	GATC	3 cut(s)	172, 301, 463
SchI	GAGTC	2 cut(s)	535, 604
ScrFI	CCNGG	2 cut(s)	78, 238
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	7 cut(s)	94, 191, 264, 276, 452, 540, 618
SfaNI	GCATC	2 cut(s)	106, 136
SfcI	CTRYAG	1 cut(s)	635
Sse9I	AATT	6 cut(s)	13, 254, 266, 370, 432, 573
SsiI	CCGC	2 cut(s)	149, 626
SspI	AATATT	1 cut(s)	605
StyD4I	CCNGG	2 cut(s)	76, 236
TaaI	ACNGT	4 cut(s)	61, 165, 299, 365
TaiI	ACGT	1 cut(s)	94
TaqI	TCGA	2 cut(s)	160, 344
TasI	AATT	6 cut(s)	13, 254, 266, 370, 432, 573
TatI	WGTACW	1 cut(s)	426
TauI	GCSGC	2 cut(s)	152, 628
TfiI	GAWTC	1 cut(s)	517
TscAI	CASTG	3 cut(s)	304, 370, 449
TspDTI	ATGAA	2 cut(s)	58, 115
TspGWI	ACGGA	2 cut(s)	183, 316
TspRI	CASTG	3 cut(s)	304, 370, 449
Tth111I	GACNNNGTC	1 cut(s)	93
XapI	RAATTY	3 cut(s)	370, 432, 573
XceI	RCATGY	1 cut(s)	355
ZraI	GACGTC	1 cut(s)	92
Zsp2I	ATGCAT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.