Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0008196

Physical Location & Seq

Genomic Coordinates Forward (+)

13545773 .. 13546474

Gene Structure 702 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g10780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGATGAAGCAACTGCACAAGCAATCGAGCGTGAACCACCGGCGGGACGAAGAGACCCCATCGACCCTAAGCTCTCCCTACTCCCCCAAAGCTCTCAAGCACCCCCGATCGCTCCCCAGATCCATCAACTACCTCTTCAAGGAGCAGCGCCTCCTCTTCATCCTCGTCGGCATTCTCATCGGTTCCACCTTCTTCATCCTCCAGCCCACCCTCTCCCGCCTTGGCCCCTCCGATCCCAACTCCGCCATCAACACCGTCTCCAGATCCTTCTCCACCGCCCACAACCTCGTCTCCAAGCCCACTCATGCCAAGGTCGGTCGCGTCCCTGTTGCCCTCGGCAAGCGGAGGCTCCGCATCGTCGTCACCGGCGGAGCTGGGTTCGTCGGGTCCCACCTCGTTGACAAGCTCCTTGACAGAGGTAATGATGTGATTGTGATTGATAATTTCTTCACTGGGAGGAAGAACAATCTGGTGCATCATTTCGGGAACCCGAGGTTCGAGCTCATTCGGCACGACGTCGTCGAGCCGGTTCTGTTGGAGGTGGATCAGATCTACCATTTGGCTTGCCCTGCCTCCCCTGTTCATTACAAGTATAACCCAGTCAAGACAATTATATCCTTTTCAACTAGTTATGCTTTTATCGTAGTTTTTATTGAATTTTGGCATTTGGGTTGTTGTTGTTTGCTTGATTTTTTGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005975 GO:0005996 GO:0008150 GO:0008152 GO:0016829 GO:0016830 GO:0016831 GO:0019321 GO:0036094 GO:0042732 GO:0043167 GO:0043168 GO:0044238 GO:0044281 GO:0048037 GO:0048040 GO:0050662 GO:0051287 GO:0070403 GO:0071704 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

234

Amino Acids

26.24

Weight (kDa)

9.68

Isoelectric Point (pI)

51.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	119 - 203	4.9e-11	NAD dependent epimerase/dehydratase family
3Beta_HSD	PF01073	120 - 190	5e-06	3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd	PF16363	121 - 203	1.2e-10	GDP-mannose 4,6 dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53520 AT3G53520 AT3G53520 AT3G53520
fragaria_vesca	FvH4_6g14640
malus_domestica	MD04G1118200.v1.1 MD12G1133600.v1.1
prunus_persica	Prupe.6G247300_v2.0.a1 Prupe.6G247300_v2.0.a1
pyrus_communis	pycom04g10780 pycom12g12900
rosa_chinensis	RchiOBHm_Chr3g0467761
rosa_laevigata	RLG00000024475
rosa_multiflora	Rmu_sc0001793.1_g000026
rosa_roxburghii	Rroxscaffold_6G00413440
rosa_rugosa	Rorug03G0089700 Rorug03G0089800 Rorug06G0076700
rosa_samantha	Rh3AG138100 Rh3BG159400 Rh3CG159400 Rh3DG159900
rosa_wichuraiana	Rw3G013080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	519
AccII	CGCG	1 cut(s)	321
AciI	CCGC	7 cut(s)	43, 217, 243, 276, 343, 352, 369
AclWI	GGATC	4 cut(s)	114, 227, 258, 552
AcsI	RAATTY	1 cut(s)	656
AcyI	GRCGYC	1 cut(s)	516
AfiI	CCNNNNNNNGG	2 cut(s)	43, 139
AgsI	TTSAA	3 cut(s)	139, 624, 656
AhlI	ACTAGT	1 cut(s)	626
AluBI	AGCT	5 cut(s)	72, 92, 374, 406, 502
AluI	AGCT	5 cut(s)	72, 92, 374, 406, 502
Alw21I	GWGCWC	1 cut(s)	504
Alw26I	GTCTC	3 cut(s)	47, 262, 295
AlwI	GGATC	4 cut(s)	114, 227, 258, 552
Ama87I	CYCGRG	1 cut(s)	490
AoxI	GGCC	1 cut(s)	223
ApeKI	GCWGC	1 cut(s)	145
ApoI	RAATTY	1 cut(s)	656
AspLEI	GCGC	1 cut(s)	150
AspS9I	GGNCC	2 cut(s)	224, 387
AsuHPI	GGTGA	1 cut(s)	355
AvaI	CYCGRG	1 cut(s)	490
AvaII	GGWCC	1 cut(s)	387
BanII	GRGCYC	1 cut(s)	504
Bbv12I	GWGCWC	1 cut(s)	504
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	3 cut(s)	67, 131, 254
BcgI	CGANNNNNNTGC	2 cut(s)	160, 194
BcoDI	GTCTC	3 cut(s)	47, 262, 295
BcuI	ACTAGT	1 cut(s)	626
BfaI	CTAG	1 cut(s)	627
BfoI	RGCGCY	1 cut(s)	151
BglII	AGATCT	1 cut(s)	549
BisI	GCNGC	1 cut(s)	146
BlsI	GCNGC	1 cut(s)	147
Bme18I	GGWCC	1 cut(s)	387
BmeT110I	CYCGRG	1 cut(s)	490
BmgT120I	GGNCC	2 cut(s)	224, 387
BmiI	GGNNCC	6 cut(s)	184, 226, 350, 388, 389, 488
BmrI	ACTGGG	2 cut(s)	462, 593
BmsI	GCATC	2 cut(s)	363, 484
BmuI	ACTGGG	2 cut(s)	462, 593
BpmI	CTGGAG	2 cut(s)	185, 244
Bpu10I	CCTNAGC	1 cut(s)	68
BpuEI	CTTGAG	1 cut(s)	80
BsaHI	GRCGYC	1 cut(s)	516
BsaI	GGTCTC	1 cut(s)	47
BsaJI	CCNNGG	4 cut(s)	220, 309, 334, 491
BsaXI	ACNNNNNCTCC	4 cut(s)	242, 272, 275, 305
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 139
Bse118I	RCCGGY	3 cut(s)	39, 365, 526
Bse1I	ACTGG	2 cut(s)	457, 599
BseDI	CCNNGG	4 cut(s)	220, 309, 334, 491
BseGI	GGATG	2 cut(s)	159, 195
BseLI	CCNNNNNNNGG	2 cut(s)	43, 139
BseNI	ACTGG	2 cut(s)	457, 599
BseRI	GAGGAG	1 cut(s)	143
BseXI	GCAGC	1 cut(s)	157
BseYI	CCCAGC	1 cut(s)	374
Bsh1236I	CGCG	1 cut(s)	321
Bsh1285I	CGRYCG	2 cut(s)	110, 319
BshFI	GGCC	1 cut(s)	225
BsiEI	CGRYCG	2 cut(s)	110, 319
BsiHKAI	GWGCWC	1 cut(s)	504
BsiHKCI	CYCGRG	1 cut(s)	490
BsiSI	CCGG	3 cut(s)	40, 366, 527
BslFI	GGGAC	3 cut(s)	59, 308, 373
BslI	CCNNNNNNNGG	2 cut(s)	43, 139
BsmAI	GTCTC	3 cut(s)	47, 262, 295
BsmBI	CGTCTC	2 cut(s)	262, 295
BsmFI	GGGAC	3 cut(s)	59, 308, 373
BsmI	GAATGC	1 cut(s)	171
BsnI	GGCC	1 cut(s)	225
Bso31I	GGTCTC	1 cut(s)	47
BsoBI	CYCGRG	1 cut(s)	490
Bsp1286I	GDGCHC	1 cut(s)	504
Bsp143I	GATC	6 cut(s)	107, 119, 232, 263, 544, 549
BspACI	CCGC	7 cut(s)	43, 217, 243, 276, 343, 352, 369
BspANI	GGCC	1 cut(s)	225
BspFNI	CGCG	1 cut(s)	321
BspLI	GGNNCC	6 cut(s)	184, 226, 350, 388, 389, 488
BspPI	GGATC	4 cut(s)	114, 227, 258, 552
BspTNI	GGTCTC	1 cut(s)	47
BsrFI	RCCGGY	3 cut(s)	39, 365, 526
BsrI	ACTGG	2 cut(s)	457, 599
BssAI	RCCGGY	3 cut(s)	39, 365, 526
BssECI	CCNNGG	4 cut(s)	220, 309, 334, 491
BssMI	GATC	6 cut(s)	107, 119, 232, 263, 544, 549
BssNI	GRCGYC	1 cut(s)	516
BssT1I	CCWWGG	2 cut(s)	220, 309
Bst4CI	ACNGT	1 cut(s)	256
Bst6I	CTCTTC	3 cut(s)	45, 140, 161
BstACI	GRCGYC	1 cut(s)	516
BstC8I	GCNNGC	2 cut(s)	341, 565
BstDEI	CTNAG	1 cut(s)	68
BstENI	CCTNNNNNAGG	1 cut(s)	137
BstF5I	GGATG	2 cut(s)	159, 195
BstFNI	CGCG	1 cut(s)	321
BstH2I	RGCGCY	1 cut(s)	151
BstHHI	GCGC	1 cut(s)	150
BstKTI	GATC	6 cut(s)	110, 122, 235, 266, 547, 552
BstMAI	GTCTC	3 cut(s)	47, 262, 295
BstMBI	GATC	6 cut(s)	107, 119, 232, 263, 544, 549
BstMCI	CGRYCG	2 cut(s)	110, 319
BstMWI	GCNNNNNNNGC	2 cut(s)	508, 569
BstUI	CGCG	1 cut(s)	321
BstV1I	GCAGC	1 cut(s)	157
BstX2I	RGATCY	3 cut(s)	119, 263, 549
BstYI	RGATCY	3 cut(s)	119, 263, 549
BsuRI	GGCC	1 cut(s)	225
BtsCI	GGATG	2 cut(s)	159, 195
BtsIMutI	CAGTG	1 cut(s)	450
Cac8I	GCNNGC	2 cut(s)	341, 565
CfoI	GCGC	1 cut(s)	150
Cfr10I	RCCGGY	3 cut(s)	39, 365, 526
Cfr13I	GGNCC	2 cut(s)	224, 387
CseI	GACGC	1 cut(s)	310
CviAII	CATG	1 cut(s)	305
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	6 cut(s)	109, 121, 234, 265, 546, 551
DpnII	GATC	6 cut(s)	107, 119, 232, 263, 544, 549
Eam1104I	CTCTTC	3 cut(s)	45, 140, 161
EarI	CTCTTC	3 cut(s)	45, 140, 161
EciI	GGCGGA	2 cut(s)	232, 384
Ecl136II	GAGCTC	1 cut(s)	502
Eco130I	CCWWGG	2 cut(s)	220, 309
Eco24I	GRGCYC	1 cut(s)	504
Eco31I	GGTCTC	1 cut(s)	47
Eco47I	GGWCC	1 cut(s)	387
Eco53kI	GAGCTC	1 cut(s)	502
Eco88I	CYCGRG	1 cut(s)	490
EcoICRI	GAGCTC	1 cut(s)	502
EcoNI	CCTNNNNNAGG	1 cut(s)	137
EcoO109I	RGGNCCY	1 cut(s)	387
EcoT14I	CCWWGG	2 cut(s)	220, 309
EcoT38I	GRGCYC	1 cut(s)	504
ErhI	CCWWGG	2 cut(s)	220, 309
Esp3I	CGTCTC	2 cut(s)	262, 295
FaeI	CATG	1 cut(s)	308
FaiI	YATR	4 cut(s)	306, 594, 614, 633
FaqI	GGGAC	3 cut(s)	59, 308, 373
FatI	CATG	1 cut(s)	304
FauI	CCCGC	2 cut(s)	36, 224
Fnu4HI	GCNGC	1 cut(s)	146
FokI	GGATG	2 cut(s)	146, 182
FriOI	GRGCYC	1 cut(s)	504
Fsp4HI	GCNGC	1 cut(s)	146
FspBI	CTAG	1 cut(s)	627
GlaI	GCGC	1 cut(s)	149
GluI	GCNGC	1 cut(s)	146
GsaI	CCCAGC	1 cut(s)	378
GsuI	CTGGAG	2 cut(s)	185, 244
HaeII	RGCGCY	1 cut(s)	151
HaeIII	GGCC	1 cut(s)	225
HapII	CCGG	3 cut(s)	40, 366, 527
HgaI	GACGC	1 cut(s)	310
HhaI	GCGC	1 cut(s)	150
Hin1I	GRCGYC	1 cut(s)	516
Hin1II	CATG	1 cut(s)	308
Hin6I	GCGC	1 cut(s)	148
HinP1I	GCGC	1 cut(s)	148
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HpaII	CCGG	3 cut(s)	40, 366, 527
HphI	GGTGA	1 cut(s)	355
Hpy166II	GTNNAC	2 cut(s)	34, 400
Hpy188I	TCNGA	2 cut(s)	232, 549
Hpy188III	TCNNGA	3 cut(s)	261, 484, 604
Hpy8I	GTNNAC	2 cut(s)	34, 400
Hpy99I	CGWCG	6 cut(s)	170, 362, 386, 518, 521, 524
HpyAV	CCTTC	2 cut(s)	199, 277
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4IV	ACGT	1 cut(s)	516
HpyCH4V	TGCA	2 cut(s)	16, 475
HpyF10VI	GCNNNNNNNGC	2 cut(s)	508, 569
HpyF3I	CTNAG	1 cut(s)	68
HpySE526I	ACGT	1 cut(s)	516
Hsp92I	GRCGYC	1 cut(s)	516
Hsp92II	CATG	1 cut(s)	308
HspAI	GCGC	1 cut(s)	148
KflI	GGGWCCC	1 cut(s)	387
Kzo9I	GATC	6 cut(s)	107, 119, 232, 263, 544, 549
LmnI	GCTCC	5 cut(s)	117, 142, 354, 371, 411
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	2 cut(s)	363, 484
MaeI	CTAG	1 cut(s)	627
MaeII	ACGT	1 cut(s)	516
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	6 cut(s)	109, 121, 234, 265, 546, 551
MboI	GATC	6 cut(s)	107, 119, 232, 263, 544, 549
MboII	GAAGA	6 cut(s)	62, 127, 148, 184, 439, 472
MflI	RGATCY	3 cut(s)	119, 263, 549
MhlI	GDGCHC	1 cut(s)	504
MluCI	AATT	3 cut(s)	442, 609, 656
MmeI	TCCRAC	1 cut(s)	516
MspI	CCGG	3 cut(s)	40, 366, 527
Mva1269I	GAATGC	1 cut(s)	171
MvnI	CGCG	1 cut(s)	321
MwoI	GCNNNNNNNGC	2 cut(s)	508, 569
NdeII	GATC	6 cut(s)	107, 119, 232, 263, 544, 549
NlaIII	CATG	1 cut(s)	308
NlaIV	GGNNCC	6 cut(s)	184, 226, 350, 388, 389, 488
NmeAIII	GCCGAG	1 cut(s)	315
NmuCI	GTSAC	1 cut(s)	361
PcsI	WCGNNNNNNNCGW	1 cut(s)	519
PctI	GAATGC	1 cut(s)	171
PflFI	GACNNNGTC	1 cut(s)	518
PkrI	GCNGC	1 cut(s)	147
Ple19I	CGATCG	1 cut(s)	110
PpuMI	RGGWCCY	1 cut(s)	387
Psp124BI	GAGCTC	1 cut(s)	504
Psp5II	RGGWCCY	1 cut(s)	387
PspFI	CCCAGC	1 cut(s)	374
PspN4I	GGNNCC	6 cut(s)	184, 226, 350, 388, 389, 488
PspPI	GGNCC	2 cut(s)	224, 387
PspPPI	RGGWCCY	1 cut(s)	387
PsuI	RGATCY	3 cut(s)	119, 263, 549
PsyI	GACNNNGTC	1 cut(s)	518
PvuI	CGATCG	1 cut(s)	110
SacI	GAGCTC	1 cut(s)	504
SatI	GCNGC	1 cut(s)	146
Sau3AI	GATC	6 cut(s)	107, 119, 232, 263, 544, 549
Sau96I	GGNCC	2 cut(s)	224, 387
SduI	GDGCHC	1 cut(s)	504
SfaNI	GCATC	2 cut(s)	363, 484
SgrAI	CRCCGGYG	2 cut(s)	39, 365
SinI	GGWCC	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SpeI	ACTAGT	1 cut(s)	626
Sse9I	AATT	3 cut(s)	442, 609, 656
SsiI	CCGC	7 cut(s)	43, 217, 243, 276, 343, 352, 369
SspMI	CTAG	1 cut(s)	627
SstI	GAGCTC	1 cut(s)	504
StyI	CCWWGG	2 cut(s)	220, 309
TaaI	ACNGT	1 cut(s)	256
TaiI	ACGT	1 cut(s)	519
TaqI	TCGA	4 cut(s)	26, 62, 498, 522
TaqII	GACCGA	1 cut(s)	305
TasI	AATT	3 cut(s)	442, 609, 656
TscAI	CASTG	1 cut(s)	457
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	1 cut(s)	145
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	4 cut(s)	20, 148, 184, 572
TspRI	CASTG	1 cut(s)	457
Tth111I	GACNNNGTC	1 cut(s)	518
VpaK11BI	GGWCC	1 cut(s)	387
XagI	CCTNNNNNAGG	1 cut(s)	137
XapI	RAATTY	1 cut(s)	656
XspI	CTAG	1 cut(s)	627
ZraI	GACGTC	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.