Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008196

Physical Location & Seq

Genomic Coordinates Reverse (-)

10177229 .. 10179133

Gene Structure 1905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0076700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

ATGGCCATGGAAACCAACTCATGTCAACAGCTTCAAATTTTCTTTCTTCCATACATGGCTCGTGGCCACAGCATACCCCTTATAGACATAGCCAAACTATTTTCTTCTCGTGGTGCAAGATGCACCATAGTAACTACTCCCCTCAATGCCCCGCTCTTCTCCAAAGCAATCCAAAAAGGTGAGATTGAACTTGTTCTCATCAAGTTCCCATCTACTGAAGCTGGGTTGCCTCAAGACTGCGAAAGCGCCGACTTGATTACAACACAAGACACGGTGGAAAAATTTATCAAAGCCACCTTTTTACTTGCACCACAGCTTGAGCAGGTTTTAGACGAACATCGTCCTCATTGCCTTGTTGCTGATGGTTTCTTTCCTTGGGCTACAGATGTGGCCGCCAAGTTTGGAATTCCAAGGCTGTATTTCCATGGAATCGGTTTCTTCCCATTGTGCGCTTCACTGAGTGTGATGATGTATCAACCTCAGACGAAGTTGTCGTCTGATTCAGAATCTTTTGTCATTCCTAATCTCCCTGATGAGATCAAGATGAATAGAAGCCAATTACCAGTTTTTCCCAATCTAGATGGTGAGTCAGAATTCTTGAACATGCTCAAAGCATCCACAGAGAGCGAAGAAAGGAGCTATGGGGTTATTGTTAACAGCTTTTATGAACTAGAACCAGCTTATGCAGATCATTATAGGAAGGTGTTTGGGAGGAAGGCATGGCATATCGGCCCCGTTTCGTTATGTAATAAGGCAGCAGAGGATAAAGCAGAGAGGGGGTCAATAGAAAGCTCGACTGCTGAGAAACATGAGTGCTTGAAATGGCTTGATTCAAAGAAACCCTATTCGGTTGTGTATGTATCATTCGGAAGCTTGATCCAATTTGCTGATTGCCAGCTACTAGAAATTGCAATGGGCCTTGAGGCTTCTGGACAAGACTTCGTTTGGGTTGTGAAGAAAGAAAACAAGGATGTAGAAAACTGGTTGCCTAAAGGATTTGAGAAGAGAATGGAAGGTAAGGGACTGATTATAAGAGATTGGGCTCCCCAAGTGCTGATTCTTGAGCATGAAGCAATAGGAGCATTTGTGACTCACTGTGGGTGGAACTCTATCCTAGAAGGAGTGTCTGCCGGGGTTCCAATGATCACGTGGCCGGTATTCGGCGAGCAGTTTTACAATGAGAAGTTGGTGACTGAGATACATAGGATTGGCGTTCCTGTTGGTTCTGAAAAATGGGTTTTATCATTTGTGGATGTAAGTGCGGAAACTGAAGCGAGTGTGAGGAGAGAGGCCATAGAGGAGGCTGTGACTAGAATCATGGTGGGTGATGAATCAGTGGAAATAAGAAGCAGAGTTAAAGAACTTGAAGAGAAGGCAAGGAGGGCTGTTGAAGAAGGTGGCTCATCTTTCTTGGATTTATCTGCTCTAGTTGGAGAGTTGAACCACCTTCTGGAGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005975 GO:0005996 GO:0008150 GO:0008152 GO:0016829 GO:0016830 GO:0016831 GO:0019321 GO:0036094 GO:0042732 GO:0043167 GO:0043168 GO:0044238 GO:0044281 GO:0048037 GO:0048040 GO:0050662 GO:0051287 GO:0070403 GO:0071704 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

486

Amino Acids

54.38

Weight (kDa)

5.07

Isoelectric Point (pI)

47.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	275 - 398	5.2e-24	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53520 AT3G53520 AT3G53520 AT3G53520
fragaria_vesca	FvH4_6g14640
malus_domestica	MD04G1118200.v1.1 MD12G1133600.v1.1
prunus_persica	Prupe.6G247300_v2.0.a1 Prupe.6G247300_v2.0.a1
pyrus_communis	pycom04g10780 pycom12g12900
rosa_chinensis	RchiOBHm_Chr3g0467761
rosa_laevigata	RLG00000024475
rosa_multiflora	Rmu_sc0001793.1_g000026
rosa_roxburghii	Rroxscaffold_6G00413440
rosa_rugosa	Rorug03G0089700 Rorug03G0089800 Rorug06G0076700
rosa_samantha	Rh3AG138100 Rh3BG159400 Rh3CG159400 Rh3DG159900
rosa_wichuraiana	Rw3G013080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1031
AasI	GACNNNNNNGTC	1 cut(s)	490
Acc36I	ACCTGC	1 cut(s)	313
AccB7I	CCANNNNNTGG	1 cut(s)	1450
AccBSI	CCGCTC	1 cut(s)	154
AciI	CCGC	3 cut(s)	152, 393, 1262
AclWI	GGATC	1 cut(s)	871
AcoI	YGGCCR	4 cut(s)	3, 64, 390, 1151
AcsI	RAATTY	4 cut(s)	36, 281, 405, 593
AcuI	CTGAAG	2 cut(s)	237, 1290
AcvI	CACGTG	1 cut(s)	1149
AdeI	CACNNNGTG	1 cut(s)	461
AfiI	CCNNNNNNNGG	3 cut(s)	1160, 1450, 1453
AgsI	TTSAA	8 cut(s)	35, 188, 601, 820, 834, 1367, 1391, 1441
AjuI	GAANNNNNNNTTGG	2 cut(s)	1041, 1073
AluBI	AGCT	9 cut(s)	31, 221, 316, 639, 660, 680, 792, 873, 898
AluI	AGCT	9 cut(s)	31, 221, 316, 639, 660, 680, 792, 873, 898
AlwI	GGATC	1 cut(s)	871
AoxI	GGCC	8 cut(s)	3, 64, 390, 730, 916, 1151, 1290, 1455
ApeKI	GCWGC	1 cut(s)	755
ApoI	RAATTY	4 cut(s)	36, 281, 405, 593
ArsI	GACNNNNNNTTYG	2 cut(s)	479, 511
Asp700I	GAANNNNTTC	1 cut(s)	192
AspLEI	GCGC	2 cut(s)	248, 452
AspS9I	GGNCC	2 cut(s)	731, 916
AsuC2I	CCSGG	1 cut(s)	1132
AsuHPI	GGTGA	4 cut(s)	191, 596, 1201, 1337
BalI	TGGCCA	2 cut(s)	5, 66
BanII	GRGCYC	1 cut(s)	1045
BauI	CACGAG	2 cut(s)	60, 108
BbrPI	CACGTG	1 cut(s)	1149
BbvI	GCAGC	1 cut(s)	767
BccI	CCATC	3 cut(s)	217, 356, 575
BclI	TGATCA	1 cut(s)	1143
BcnI	CCSGG	1 cut(s)	1132
BfaI	CTAG	7 cut(s)	578, 671, 902, 1115, 1311, 1427, 1459
BfmI	CTRYAG	1 cut(s)	381
BfoI	RGCGCY	1 cut(s)	249
BfuAI	ACCTGC	1 cut(s)	313
BisI	GCNGC	2 cut(s)	393, 756
BlsI	GCNGC	2 cut(s)	394, 757
Bme1390I	CCNGG	1 cut(s)	1132
BmgT120I	GGNCC	2 cut(s)	731, 916
BmiI	GGNNCC	3 cut(s)	733, 1044, 1137
BmrFI	CCNGG	1 cut(s)	1132
BmsI	GCATC	2 cut(s)	110, 623
BpuEI	CTTGAG	4 cut(s)	216, 338, 941, 1082
BpuMI	CCSGG	1 cut(s)	1132
BsaAI	YACGTR	1 cut(s)	1149
BsaJI	CCNNGG	5 cut(s)	6, 374, 410, 424, 1131
BsaXI	ACNNNNNCTCC	2 cut(s)	1071, 1101
Bsc4I	CCNNNNNNNGG	3 cut(s)	1160, 1450, 1453
Bse118I	RCCGGY	1 cut(s)	1153
Bse1I	ACTGG	2 cut(s)	563, 986
Bse3DI	GCAATG	2 cut(s)	346, 918
BseDI	CCNNGG	5 cut(s)	6, 374, 410, 424, 1131
BseGI	GGATG	3 cut(s)	614, 976, 1258
BseLI	CCNNNNNNNGG	3 cut(s)	1160, 1450, 1453
BseMI	GCAATG	2 cut(s)	346, 918
BseMII	CTCAG	4 cut(s)	449, 494, 792, 1185
BseNI	ACTGG	2 cut(s)	563, 986
BseRI	GAGGAG	2 cut(s)	1297, 1313
BseXI	GCAGC	1 cut(s)	767
BseYI	CCCAGC	1 cut(s)	221
BshFI	GGCC	8 cut(s)	5, 66, 392, 732, 918, 1153, 1292, 1457
BsiSI	CCGG	2 cut(s)	1131, 1154
BslFI	GGGAC	1 cut(s)	1035
BslI	CCNNNNNNNGG	3 cut(s)	1160, 1450, 1453
BsmFI	GGGAC	1 cut(s)	1035
BsnI	GGCC	8 cut(s)	5, 66, 392, 732, 918, 1153, 1292, 1457
Bsp1286I	GDGCHC	1 cut(s)	1045
Bsp143I	GATC	4 cut(s)	537, 688, 876, 1143
Bsp19I	CCATGG	2 cut(s)	6, 424
BspACI	CCGC	3 cut(s)	152, 393, 1262
BspANI	GGCC	8 cut(s)	5, 66, 392, 732, 918, 1153, 1292, 1457
BspCNI	CTCAG	4 cut(s)	450, 493, 793, 1186
BspLI	GGNNCC	3 cut(s)	733, 1044, 1137
BspMI	ACCTGC	1 cut(s)	313
BspPI	GGATC	1 cut(s)	871
BspQI	GCTCTTC	1 cut(s)	161
BsrBI	CCGCTC	1 cut(s)	154
BsrDI	GCAATG	2 cut(s)	346, 918
BsrFI	RCCGGY	1 cut(s)	1153
BsrI	ACTGG	2 cut(s)	563, 986
BssAI	RCCGGY	1 cut(s)	1153
BssECI	CCNNGG	5 cut(s)	6, 374, 410, 424, 1131
BssMI	GATC	4 cut(s)	537, 688, 876, 1143
BssSI	CACGAG	2 cut(s)	60, 108
BssT1I	CCWWGG	4 cut(s)	6, 374, 410, 424
Bst2BI	CACGAG	2 cut(s)	60, 108
Bst4CI	ACNGT	2 cut(s)	274, 1097
Bst6I	CTCTTC	3 cut(s)	161, 998, 1362
BstBAI	YACGTR	1 cut(s)	1149
BstC8I	GCNNGC	2 cut(s)	896, 1166
BstDEI	CTNAG	4 cut(s)	458, 480, 801, 1194
BstDSI	CCRYGG	2 cut(s)	6, 424
BstENI	CCTNNNNNAGG	1 cut(s)	1451
BstF5I	GGATG	3 cut(s)	614, 976, 1258
BstH2I	RGCGCY	1 cut(s)	249
BstHHI	GCGC	2 cut(s)	248, 452
BstKTI	GATC	4 cut(s)	540, 691, 879, 1146
BstMBI	GATC	4 cut(s)	537, 688, 876, 1143
BstMWI	GCNNNNNNNGC	2 cut(s)	1079, 1382
BstNSI	RCATGY	1 cut(s)	607
BstSCI	CCNGG	1 cut(s)	1130
BstSFI	CTRYAG	1 cut(s)	381
BstV1I	GCAGC	1 cut(s)	767
BsuRI	GGCC	8 cut(s)	5, 66, 392, 732, 918, 1153, 1292, 1457
BtgI	CCRYGG	2 cut(s)	6, 424
BtsCI	GGATG	3 cut(s)	614, 976, 1258
BtsIMutI	CAGTG	3 cut(s)	455, 1093, 1341
BveI	ACCTGC	1 cut(s)	313
Cac8I	GCNNGC	2 cut(s)	896, 1166
CfoI	GCGC	2 cut(s)	248, 452
Cfr10I	RCCGGY	1 cut(s)	1153
Cfr13I	GGNCC	2 cut(s)	731, 916
CviAII	CATG	9 cut(s)	7, 21, 55, 425, 604, 720, 809, 1067, 1318
DdeI	CTNAG	4 cut(s)	458, 480, 801, 1194
DpnI	GATC	4 cut(s)	539, 690, 878, 1145
DpnII	GATC	4 cut(s)	537, 688, 876, 1143
DraIII	CACNNNGTG	1 cut(s)	461
DrdI	GACNNNNNNGTC	1 cut(s)	490
DseDI	GACNNNNNNGTC	1 cut(s)	490
EaeI	YGGCCR	4 cut(s)	3, 64, 390, 1151
Eam1104I	CTCTTC	3 cut(s)	161, 998, 1362
EarI	CTCTTC	3 cut(s)	161, 998, 1362
Eco130I	CCWWGG	4 cut(s)	6, 374, 410, 424
Eco147I	AGGCCT	1 cut(s)	1457
Eco24I	GRGCYC	1 cut(s)	1045
Eco57I	CTGAAG	2 cut(s)	237, 1290
Eco72I	CACGTG	1 cut(s)	1149
EcoNI	CCTNNNNNAGG	1 cut(s)	1451
EcoRI	GAATTC	2 cut(s)	405, 593
EcoT14I	CCWWGG	4 cut(s)	6, 374, 410, 424
EcoT38I	GRGCYC	1 cut(s)	1045
ErhI	CCWWGG	4 cut(s)	6, 374, 410, 424
FaeI	CATG	9 cut(s)	10, 24, 58, 428, 607, 723, 812, 1070, 1321
FaqI	GGGAC	1 cut(s)	1035
FatI	CATG	9 cut(s)	6, 20, 54, 424, 603, 719, 808, 1066, 1317
FauI	CCCGC	1 cut(s)	159
FbaI	TGATCA	1 cut(s)	1143
Fnu4HI	GCNGC	2 cut(s)	393, 756
FokI	GGATG	3 cut(s)	601, 983, 1265
FriOI	GRGCYC	1 cut(s)	1045
Fsp4HI	GCNGC	2 cut(s)	393, 756
FspBI	CTAG	7 cut(s)	578, 671, 902, 1115, 1311, 1427, 1459
GlaI	GCGC	2 cut(s)	247, 451
GluI	GCNGC	2 cut(s)	393, 756
GsaI	CCCAGC	1 cut(s)	225
HaeII	RGCGCY	1 cut(s)	249
HaeIII	GGCC	8 cut(s)	5, 66, 392, 732, 918, 1153, 1292, 1457
HapII	CCGG	2 cut(s)	1131, 1154
HhaI	GCGC	2 cut(s)	248, 452
Hin1II	CATG	9 cut(s)	10, 24, 58, 428, 607, 723, 812, 1070, 1321
Hin6I	GCGC	2 cut(s)	246, 450
HinP1I	GCGC	2 cut(s)	246, 450
HincII	GTYRAC	2 cut(s)	26, 655
HindII	GTYRAC	2 cut(s)	26, 655
HindIII	AAGCTT	1 cut(s)	871
HinfI	GANTC	9 cut(s)	429, 500, 506, 587, 830, 1057, 1090, 1314, 1331
HpaI	GTTAAC	1 cut(s)	655
HpaII	CCGG	2 cut(s)	1131, 1154
HphI	GGTGA	4 cut(s)	191, 596, 1201, 1337
Hpy166II	GTNNAC	2 cut(s)	26, 655
Hpy188I	TCNGA	6 cut(s)	483, 499, 505, 592, 869, 1228
Hpy188III	TCNNGA	7 cut(s)	233, 541, 578, 598, 930, 1061, 1451
Hpy8I	GTNNAC	2 cut(s)	26, 655
HpyAV	CCTTC	7 cut(s)	694, 709, 1007, 1112, 1366, 1388, 1457
HpyCH4III	ACNGT	2 cut(s)	274, 1097
HpyCH4IV	ACGT	1 cut(s)	1148
HpyCH4V	TGCA	5 cut(s)	116, 123, 308, 686, 911
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1079, 1382
HpyF3I	CTNAG	4 cut(s)	458, 480, 801, 1194
HpySE526I	ACGT	1 cut(s)	1148
Hsp92II	CATG	9 cut(s)	10, 24, 58, 428, 607, 723, 812, 1070, 1321
HspAI	GCGC	2 cut(s)	246, 450
Ksp22I	TGATCA	1 cut(s)	1143
KspAI	GTTAAC	1 cut(s)	655
Kzo9I	GATC	4 cut(s)	537, 688, 876, 1143
LguI	GCTCTTC	1 cut(s)	161
LmnI	GCTCC	3 cut(s)	636, 1048, 1079
Lsp1109I	GCAGC	1 cut(s)	767
LweI	GCATC	2 cut(s)	110, 623
MaeI	CTAG	7 cut(s)	578, 671, 902, 1115, 1311, 1427, 1459
MaeII	ACGT	1 cut(s)	1148
MaeIII	GTNAC	4 cut(s)	130, 1087, 1189, 1306
MalI	GATC	4 cut(s)	539, 690, 878, 1145
MbiI	CCGCTC	1 cut(s)	154
MboI	GATC	4 cut(s)	537, 688, 876, 1143
MboII	GAAGA	9 cut(s)	38, 96, 148, 430, 641, 967, 1015, 1379, 1403
MhlI	GDGCHC	1 cut(s)	1045
MlsI	TGGCCA	2 cut(s)	5, 66
MluCI	AATT	7 cut(s)	36, 281, 405, 557, 593, 881, 906
MluNI	TGGCCA	2 cut(s)	5, 66
MlyI	GAGTC	2 cut(s)	596, 1084
MmeI	TCCRAC	1 cut(s)	1411
Mox20I	TGGCCA	2 cut(s)	5, 66
MroXI	GAANNNNTTC	1 cut(s)	192
MscI	TGGCCA	2 cut(s)	5, 66
MseI	TTAA	2 cut(s)	654, 1356
Msp20I	TGGCCA	2 cut(s)	5, 66
MspI	CCGG	2 cut(s)	1131, 1154
MspR9I	CCNGG	1 cut(s)	1132
MwoI	GCNNNNNNNGC	2 cut(s)	1079, 1382
NciI	CCSGG	1 cut(s)	1132
NcoI	CCATGG	2 cut(s)	6, 424
NdeII	GATC	4 cut(s)	537, 688, 876, 1143
NlaIII	CATG	9 cut(s)	10, 24, 58, 428, 607, 723, 812, 1070, 1321
NlaIV	GGNNCC	3 cut(s)	733, 1044, 1137
NmuCI	GTSAC	3 cut(s)	1087, 1189, 1306
NspI	RCATGY	1 cut(s)	607
PceI	AGGCCT	1 cut(s)	1457
PciSI	GCTCTTC	1 cut(s)	161
PcsI	WCGNNNNNNNCGW	1 cut(s)	491
PdmI	GAANNNNTTC	1 cut(s)	192
PfeI	GAWTC	7 cut(s)	429, 500, 506, 830, 1057, 1314, 1331
PflMI	CCANNNNNTGG	1 cut(s)	1450
PkrI	GCNGC	2 cut(s)	394, 757
PleI	GAGTC	2 cut(s)	595, 1084
PmaCI	CACGTG	1 cut(s)	1149
PmlI	CACGTG	1 cut(s)	1149
PpsI	GAGTC	2 cut(s)	595, 1084
Ppu21I	YACGTR	1 cut(s)	1149
PsiI	TTATAA	1 cut(s)	1031
PspCI	CACGTG	1 cut(s)	1149
PspFI	CCCAGC	1 cut(s)	221
PspN4I	GGNNCC	3 cut(s)	733, 1044, 1137
PspPI	GGNCC	2 cut(s)	731, 916
SapI	GCTCTTC	1 cut(s)	161
SaqAI	TTAA	2 cut(s)	654, 1356
SatI	GCNGC	2 cut(s)	393, 756
Sau3AI	GATC	4 cut(s)	537, 688, 876, 1143
Sau96I	GGNCC	2 cut(s)	731, 916
SchI	GAGTC	2 cut(s)	596, 1084
ScrFI	CCNGG	1 cut(s)	1132
SduI	GDGCHC	1 cut(s)	1045
SfaNI	GCATC	2 cut(s)	110, 623
SfcI	CTRYAG	1 cut(s)	381
SmlI	CTYRAG	4 cut(s)	231, 317, 920, 1061
SmoI	CTYRAG	4 cut(s)	231, 317, 920, 1061
Sse9I	AATT	7 cut(s)	36, 281, 405, 557, 593, 881, 906
SseBI	AGGCCT	1 cut(s)	1457
SsiI	CCGC	3 cut(s)	152, 393, 1262
SspMI	CTAG	7 cut(s)	578, 671, 902, 1115, 1311, 1427, 1459
StuI	AGGCCT	1 cut(s)	1457
StyD4I	CCNGG	1 cut(s)	1130
StyI	CCWWGG	4 cut(s)	6, 374, 410, 424
TaaI	ACNGT	2 cut(s)	274, 1097
TaiI	ACGT	1 cut(s)	1151
TaqI	TCGA	1 cut(s)	794
TasI	AATT	7 cut(s)	36, 281, 405, 557, 593, 881, 906
TauI	GCSGC	1 cut(s)	395
TfiI	GAWTC	7 cut(s)	429, 500, 506, 830, 1057, 1314, 1331
Tru1I	TTAA	2 cut(s)	654, 1356
Tru9I	TTAA	2 cut(s)	654, 1356
TscAI	CASTG	3 cut(s)	462, 1100, 1341
TseFI	GTSAC	3 cut(s)	1087, 1189, 1306
TseI	GCWGC	1 cut(s)	755
Tsp45I	GTSAC	3 cut(s)	1087, 1189, 1306
TspDTI	ATGAA	4 cut(s)	560, 681, 1083, 1344
TspRI	CASTG	3 cut(s)	462, 1100, 1341
Van91I	CCANNNNNTGG	1 cut(s)	1450
XagI	CCTNNNNNAGG	1 cut(s)	1451
XapI	RAATTY	4 cut(s)	36, 281, 405, 593
XbaI	TCTAGA	1 cut(s)	577
XceI	RCATGY	1 cut(s)	607
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1146
XmnI	GAANNNNTTC	1 cut(s)	192
XspI	CTAG	7 cut(s)	578, 671, 902, 1115, 1311, 1427, 1459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.