Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0008196

Physical Location & Seq

Genomic Coordinates Reverse (-)

6994022 .. 6995348

Gene Structure 1327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0089700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGACAAGAAAAACCTCTAAATCCAAGAGCAAGACTAAGGCGAAGGCTAACACTTCCGAGGAAATAGAGACTTTATTAGAGATTGACAATGTCTACGACCCGGTTCCTCCTCCTTACCAACAGGGCCCCGAGCCCATTGTGGTCTGCCCAAATGACCCCAAGGACTTGGCAGAAGTCTACGAGAAGGTGAACTTCTATGCCGCCGGCGTTATCTTGAGTGTTGTGAAGATGGTTGAGGGTCTGTCGATGGATGGCTACAACCTTGAGGCTGCGGAGATTGGGGCTGAGGTCATGGACAAGGGTAACATGCCTGGGGTGGTGGTCTTCACCGGCATCATTGAGGAGTATGCGAAAATGGGCAGGACCTTGGATGCTCTCAAGGCATACAAGAGGATGTTGGCCTCTAAGGTCACACCCAATTCTTACACTTACAGTATTCTAATTGAGACTCTGGCCGGAGACGCTGATCCGAAGTTCCTTGTTGTTGCTAAGAAGTACATGCTGGAGATGATGGGGATGGGAATGAAGCCCAATGCATTGACTTATACTGCGGTGTTTAAGGGGTTTGCGCAGCGGGGGAAGACAGAGGAGGCGAAGCAGTTCCTGGAGGACATGAAAGCCAAGGGGTTTGAGCCGGACGAGAAGGCTGTAAGGGAGGTTCTTATGGGAAGAAGGGGACCTATGGTTAGAAGCCTCTTCAACATCCTCTTTGGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005975 GO:0005996 GO:0008150 GO:0008152 GO:0016829 GO:0016830 GO:0016831 GO:0019321 GO:0036094 GO:0042732 GO:0043167 GO:0043168 GO:0044238 GO:0044281 GO:0048037 GO:0048040 GO:0050662 GO:0051287 GO:0070403 GO:0071704 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

239

Amino Acids

26.49

Weight (kDa)

7.65

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	104 - 152	1.8e-11	PPR repeat family
PPR_long	PF17177	118 - 213	1.1e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	173 - 206	2.9e-06	PPR repeat
PPR_2	PF13041	177 - 214	9.7e-09	PPR repeat family
PPR	PF01535	181 - 210	5.2e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53520 AT3G53520 AT3G53520 AT3G53520
fragaria_vesca	FvH4_6g14640
malus_domestica	MD04G1118200.v1.1 MD12G1133600.v1.1
prunus_persica	Prupe.6G247300_v2.0.a1 Prupe.6G247300_v2.0.a1
pyrus_communis	pycom04g10780 pycom12g12900
rosa_chinensis	RchiOBHm_Chr3g0467761
rosa_laevigata	RLG00000024475
rosa_multiflora	Rmu_sc0001793.1_g000026
rosa_roxburghii	Rroxscaffold_6G00413440
rosa_rugosa	Rorug03G0089700 Rorug03G0089800 Rorug06G0076700
rosa_samantha	Rh3AG138100 Rh3BG159400 Rh3CG159400 Rh3DG159900
rosa_wichuraiana	Rw3G013080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	570
AccI	GTMKAC	2 cut(s)	93, 177
AciI	CCGC	4 cut(s)	201, 272, 551, 574
AclWI	GGATC	1 cut(s)	461
AcoI	YGGCCR	1 cut(s)	453
AfaI	GTAC	1 cut(s)	497
AgsI	TTSAA	1 cut(s)	700
AjnI	CCWGG	2 cut(s)	310, 603
Alw26I	GTCTC	3 cut(s)	62, 440, 453
AlwI	GGATC	1 cut(s)	461
AlwNI	CAGNNNCTG	1 cut(s)	604
Ama87I	CYCGRG	1 cut(s)	128
AoxI	GGCC	3 cut(s)	124, 399, 453
ApaI	GGGCCC	1 cut(s)	128
ApeKI	GCWGC	2 cut(s)	269, 571
Asp700I	GAANNNNTTC	1 cut(s)	599
AspLEI	GCGC	1 cut(s)	571
AspS9I	GGNCC	4 cut(s)	124, 125, 363, 677
AsuC2I	CCSGG	1 cut(s)	101
AsuHPI	GGTGA	2 cut(s)	199, 319
AvaI	CYCGRG	1 cut(s)	128
AvaII	GGWCC	2 cut(s)	363, 677
BaeGI	GKGCMC	1 cut(s)	128
BanII	GRGCYC	2 cut(s)	128, 135
BbsI	GAAGAC	2 cut(s)	316, 587
BbvCI	CCTCAGC	1 cut(s)	285
BbvI	GCAGC	2 cut(s)	256, 583
BccI	CCATC	5 cut(s)	223, 241, 245, 505, 511
BciT130I	CCWGG	2 cut(s)	312, 605
BcnI	CCSGG	1 cut(s)	101
BcoDI	GTCTC	3 cut(s)	62, 440, 453
BisI	GCNGC	3 cut(s)	201, 270, 572
BlsI	GCNGC	3 cut(s)	202, 271, 573
Bme1390I	CCNGG	3 cut(s)	101, 312, 605
Bme18I	GGWCC	2 cut(s)	363, 677
BmeT110I	CYCGRG	1 cut(s)	128
BmgT120I	GGNCC	4 cut(s)	124, 125, 363, 677
BmiI	GGNNCC	4 cut(s)	105, 126, 127, 678
BmrFI	CCNGG	3 cut(s)	101, 312, 605
BmsI	GCATC	2 cut(s)	342, 361
BpiI	GAAGAC	2 cut(s)	316, 587
BpmI	CTGGAG	2 cut(s)	524, 626
Bpu10I	CCTNAGC	1 cut(s)	285
BpuEI	CTTGAG	3 cut(s)	235, 284, 362
BpuMI	CCSGG	1 cut(s)	101
BsaJI	CCNNGG	5 cut(s)	57, 159, 311, 366, 621
Bse118I	RCCGGY	2 cut(s)	203, 329
BseBI	CCWGG	2 cut(s)	312, 605
BseDI	CCNNGG	5 cut(s)	57, 159, 311, 366, 621
BseGI	GGATG	5 cut(s)	256, 376, 399, 522, 702
BseMII	CTCAG	1 cut(s)	276
BseRI	GAGGAG	3 cut(s)	99, 356, 602
BseSI	GKGCMC	1 cut(s)	128
BseXI	GCAGC	2 cut(s)	256, 583
BshFI	GGCC	3 cut(s)	126, 401, 455
BsiHKCI	CYCGRG	1 cut(s)	128
BsiSI	CCGG	5 cut(s)	101, 204, 330, 456, 635
BslFI	GGGAC	1 cut(s)	690
BsmAI	GTCTC	3 cut(s)	62, 440, 453
BsmBI	CGTCTC	1 cut(s)	453
BsmFI	GGGAC	1 cut(s)	690
BsnI	GGCC	3 cut(s)	126, 401, 455
BsoBI	CYCGRG	1 cut(s)	128
Bsp120I	GGGCCC	1 cut(s)	124
Bsp1286I	GDGCHC	2 cut(s)	128, 135
Bsp143I	GATC	1 cut(s)	466
BspACI	CCGC	4 cut(s)	201, 272, 551, 574
BspANI	GGCC	3 cut(s)	126, 401, 455
BspCNI	CTCAG	1 cut(s)	277
BspLI	GGNNCC	4 cut(s)	105, 126, 127, 678
BspPI	GGATC	1 cut(s)	461
BsrFI	RCCGGY	2 cut(s)	203, 329
BssAI	RCCGGY	2 cut(s)	203, 329
BssECI	CCNNGG	5 cut(s)	57, 159, 311, 366, 621
BssMI	GATC	1 cut(s)	466
BssT1I	CCWWGG	3 cut(s)	159, 366, 621
Bst2UI	CCWGG	2 cut(s)	312, 605
Bst4CI	ACNGT	1 cut(s)	434
Bst6I	CTCTTC	1 cut(s)	701
BstC8I	GCNNGC	1 cut(s)	205
BstDEI	CTNAG	4 cut(s)	36, 285, 405, 489
BstF5I	GGATG	5 cut(s)	256, 376, 399, 522, 702
BstHHI	GCGC	1 cut(s)	571
BstKTI	GATC	1 cut(s)	469
BstMAI	GTCTC	3 cut(s)	62, 440, 453
BstMBI	GATC	1 cut(s)	466
BstMWI	GCNNNNNNNGC	2 cut(s)	380, 461
BstNI	CCWGG	2 cut(s)	312, 605
BstNSI	RCATGY	2 cut(s)	310, 502
BstSCI	CCNGG	3 cut(s)	99, 310, 603
BstSLI	GKGCMC	1 cut(s)	128
BstV1I	GCAGC	2 cut(s)	256, 583
BstV2I	GAAGAC	2 cut(s)	316, 587
BstXI	CCANNNNNNTGG	1 cut(s)	166
BsuRI	GGCC	3 cut(s)	126, 401, 455
BtsCI	GGATG	5 cut(s)	256, 376, 399, 522, 702
Cac8I	GCNNGC	1 cut(s)	205
CaiI	CAGNNNCTG	1 cut(s)	604
CfoI	GCGC	1 cut(s)	571
Cfr10I	RCCGGY	2 cut(s)	203, 329
Cfr13I	GGNCC	4 cut(s)	124, 125, 363, 677
CseI	GACGC	1 cut(s)	470
Csp6I	GTAC	1 cut(s)	496
CviAII	CATG	4 cut(s)	292, 307, 499, 613
CviQI	GTAC	1 cut(s)	496
DdeI	CTNAG	4 cut(s)	36, 285, 405, 489
DpnI	GATC	1 cut(s)	468
DpnII	GATC	1 cut(s)	466
EaeI	YGGCCR	1 cut(s)	453
Eam1104I	CTCTTC	1 cut(s)	701
EarI	CTCTTC	1 cut(s)	701
Eco130I	CCWWGG	3 cut(s)	159, 366, 621
Eco24I	GRGCYC	2 cut(s)	128, 135
Eco47I	GGWCC	2 cut(s)	363, 677
Eco88I	CYCGRG	1 cut(s)	128
EcoO109I	RGGNCCY	4 cut(s)	124, 125, 363, 677
EcoRII	CCWGG	2 cut(s)	310, 603
EcoT14I	CCWWGG	3 cut(s)	159, 366, 621
EcoT22I	ATGCAT	1 cut(s)	538
EcoT38I	GRGCYC	2 cut(s)	128, 135
ErhI	CCWWGG	3 cut(s)	159, 366, 621
Esp3I	CGTCTC	1 cut(s)	453
FaeI	CATG	4 cut(s)	295, 310, 502, 616
FalI	AAGNNNNNCTT	2 cut(s)	176, 208
FaqI	GGGAC	1 cut(s)	690
FatI	CATG	4 cut(s)	291, 306, 498, 612
FauI	CCCGC	1 cut(s)	567
FblI	GTMKAC	2 cut(s)	93, 177
Fnu4HI	GCNGC	3 cut(s)	201, 270, 572
FokI	GGATG	5 cut(s)	263, 383, 406, 529, 689
FriOI	GRGCYC	2 cut(s)	128, 135
Fsp4HI	GCNGC	3 cut(s)	201, 270, 572
FspI	TGCGCA	1 cut(s)	570
GlaI	GCGC	1 cut(s)	570
GluI	GCNGC	3 cut(s)	201, 270, 572
GsuI	CTGGAG	2 cut(s)	524, 626
HaeIII	GGCC	3 cut(s)	126, 401, 455
HapII	CCGG	5 cut(s)	101, 204, 330, 456, 635
HgaI	GACGC	1 cut(s)	470
HhaI	GCGC	1 cut(s)	571
Hin1II	CATG	4 cut(s)	295, 310, 502, 616
Hin6I	GCGC	1 cut(s)	569
HinP1I	GCGC	1 cut(s)	569
HinfI	GANTC	1 cut(s)	448
HpaII	CCGG	5 cut(s)	101, 204, 330, 456, 635
HphI	GGTGA	2 cut(s)	199, 319
Hpy166II	GTNNAC	3 cut(s)	94, 178, 190
Hpy188I	TCNGA	2 cut(s)	58, 471
Hpy188III	TCNNGA	1 cut(s)	214
Hpy8I	GTNNAC	3 cut(s)	94, 178, 190
HpyAV	CCTTC	4 cut(s)	37, 178, 637, 666
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4V	TGCA	1 cut(s)	536
HpyF10VI	GCNNNNNNNGC	2 cut(s)	380, 461
HpyF3I	CTNAG	4 cut(s)	36, 285, 405, 489
Hsp92II	CATG	4 cut(s)	295, 310, 502, 616
HspAI	GCGC	1 cut(s)	569
KroI	GCCGGC	1 cut(s)	203
KroNI	GCCGGC	1 cut(s)	205
Kzo9I	GATC	1 cut(s)	466
Lsp1109I	GCAGC	2 cut(s)	256, 583
LweI	GCATC	2 cut(s)	342, 361
MaeIII	GTNAC	2 cut(s)	302, 409
MalI	GATC	1 cut(s)	468
MboI	GATC	1 cut(s)	466
MboII	GAAGA	5 cut(s)	238, 316, 592, 681, 688
MhlI	GDGCHC	2 cut(s)	128, 135
MluCI	AATT	2 cut(s)	418, 441
MlyI	GAGTC	1 cut(s)	442
Mph1103I	ATGCAT	1 cut(s)	538
MreI	CGCCGGCG	1 cut(s)	203
MroNI	GCCGGC	1 cut(s)	203
MroXI	GAANNNNTTC	1 cut(s)	599
MseI	TTAA	1 cut(s)	558
MspA1I	CMGCKG	1 cut(s)	574
MspI	CCGG	5 cut(s)	101, 204, 330, 456, 635
MspR9I	CCNGG	3 cut(s)	101, 312, 605
MvaI	CCWGG	2 cut(s)	312, 605
MwoI	GCNNNNNNNGC	2 cut(s)	380, 461
NaeI	GCCGGC	1 cut(s)	205
NciI	CCSGG	1 cut(s)	101
NdeII	GATC	1 cut(s)	466
NgoMIV	GCCGGC	1 cut(s)	203
NlaIII	CATG	4 cut(s)	295, 310, 502, 616
NlaIV	GGNNCC	4 cut(s)	105, 126, 127, 678
NmuCI	GTSAC	1 cut(s)	409
NsbI	TGCGCA	1 cut(s)	570
NsiI	ATGCAT	1 cut(s)	538
NspI	RCATGY	2 cut(s)	310, 502
PdiI	GCCGGC	1 cut(s)	205
PdmI	GAANNNNTTC	1 cut(s)	599
PflFI	GACNNNGTC	1 cut(s)	89
PfoI	TCCNGGA	1 cut(s)	603
PkrI	GCNGC	3 cut(s)	202, 271, 573
PleI	GAGTC	1 cut(s)	442
PpsI	GAGTC	1 cut(s)	442
PpuMI	RGGWCCY	2 cut(s)	363, 677
Psp5II	RGGWCCY	2 cut(s)	363, 677
Psp6I	CCWGG	2 cut(s)	310, 603
PspGI	CCWGG	2 cut(s)	310, 603
PspN4I	GGNNCC	4 cut(s)	105, 126, 127, 678
PspOMI	GGGCCC	1 cut(s)	124
PspPI	GGNCC	4 cut(s)	124, 125, 363, 677
PspPPI	RGGWCCY	2 cut(s)	363, 677
PsrI	GAACNNNNNNTAC	2 cut(s)	642, 674
PstNI	CAGNNNCTG	1 cut(s)	604
PsyI	GACNNNGTC	1 cut(s)	89
RsaI	GTAC	1 cut(s)	497
RsaNI	GTAC	1 cut(s)	496
SaqAI	TTAA	1 cut(s)	558
SatI	GCNGC	3 cut(s)	201, 270, 572
Sau3AI	GATC	1 cut(s)	466
Sau96I	GGNCC	4 cut(s)	124, 125, 363, 677
SchI	GAGTC	1 cut(s)	442
ScrFI	CCNGG	3 cut(s)	101, 312, 605
SduI	GDGCHC	2 cut(s)	128, 135
SetI	ASST	8 cut(s)	17, 189, 264, 291, 368, 411, 660, 682
SfaNI	GCATC	2 cut(s)	342, 361
SgrAI	CRCCGGYG	1 cut(s)	203
SinI	GGWCC	2 cut(s)	363, 677
SmlI	CTYRAG	3 cut(s)	214, 263, 377
SmoI	CTYRAG	3 cut(s)	214, 263, 377
Sse9I	AATT	2 cut(s)	418, 441
SsiI	CCGC	4 cut(s)	201, 272, 551, 574
StyD4I	CCNGG	3 cut(s)	99, 310, 603
StyI	CCWWGG	3 cut(s)	159, 366, 621
TaaI	ACNGT	1 cut(s)	434
TaqI	TCGA	1 cut(s)	245
TasI	AATT	2 cut(s)	418, 441
TatI	WGTACW	1 cut(s)	495
TauI	GCSGC	1 cut(s)	203
Tru1I	TTAA	1 cut(s)	558
Tru9I	TTAA	1 cut(s)	558
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	2 cut(s)	269, 571
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	2 cut(s)	539, 629
Tth111I	GACNNNGTC	1 cut(s)	89
VpaK11BI	GGWCC	2 cut(s)	363, 677
XceI	RCATGY	2 cut(s)	310, 502
XmiI	GTMKAC	2 cut(s)	93, 177
XmnI	GAANNNNTTC	1 cut(s)	599
Zsp2I	ATGCAT	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.