Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0008196

Physical Location & Seq

Genomic Coordinates Forward (+)

15373873 .. 15374583

Gene Structure 711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g12900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGATGAAGCAACTGCACAAGCAATCAAGCTTGAACCACCGACGGGACGAAGAGATCCCATCGACCCTCAGCTCCCCCTACTCCACCAAAGCTCCCAAGCACCCCCGATCCCTCCCCAGATCCATCAACTACCTCTTCAAGGAGCAGCGCCTCCTCTTCATCCTCGTCGGCATTCTCATCGGCTCCACCTTCTTCATCCTCCAGCCCACCCTCTCCCGCCTCGGCCCCTCCGATCCCAACTCCGCCGCCACCTCCGTCTCCAGAACCTTCTCCACCGCCCACGACCTCGTCTCCAAGCCCACCCATGCCAAGGTCGGTCGCGTCCCTGTTGCGCTCGGCCAGCGGAGGCTGCGAATCGTCGTCACCGGCGGAGCTGGGTTCGTCGGGTCCCACCTCGTTGATAAGCTCATTGACAGAGGTAATGATGTCATTGTGATTGATAATTTCTTCACTGGGAGGAAGGACAATCTGGTGCACCATTTCGGGAACCCGAGGTTCGAGCTCATTAGGCACGACGTCGTCGAGCCGATTCTGCTGGAGGTGGATCAGATCTACCATTTGGCTTGCCCTGCCTCCCCTGTTCATTACAAGTATAACCCAGTCAAGACAATCATATCCTTTTCAATCAATTATACTTTTTTCCTAGTTTTCGCAGTTTTTATTGAATTCAGGCATTTGGGCGGTTGTTTTTGGCTTCATTTTTTGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005975 GO:0005996 GO:0008150 GO:0008152 GO:0016829 GO:0016830 GO:0016831 GO:0019321 GO:0036094 GO:0042732 GO:0043167 GO:0043168 GO:0044238 GO:0044281 GO:0048037 GO:0048040 GO:0050662 GO:0051287 GO:0070403 GO:0071704 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

237

Amino Acids

26.67

Weight (kDa)

9.86

Isoelectric Point (pI)

47.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	119 - 204	2e-10	NAD dependent epimerase/dehydratase family
3Beta_HSD	PF01073	120 - 189	7.6e-06	3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd	PF16363	121 - 203	1.3e-10	GDP-mannose 4,6 dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53520 AT3G53520 AT3G53520 AT3G53520
fragaria_vesca	FvH4_6g14640
malus_domestica	MD04G1118200.v1.1 MD12G1133600.v1.1
prunus_persica	Prupe.6G247300_v2.0.a1 Prupe.6G247300_v2.0.a1
pyrus_communis	pycom04g10780 pycom12g12900
rosa_chinensis	RchiOBHm_Chr3g0467761
rosa_laevigata	RLG00000024475
rosa_multiflora	Rmu_sc0001793.1_g000026
rosa_roxburghii	Rroxscaffold_6G00413440
rosa_rugosa	Rorug03G0089700 Rorug03G0089800 Rorug06G0076700
rosa_samantha	Rh3AG138100 Rh3BG159400 Rh3CG159400 Rh3DG159900
rosa_wichuraiana	Rw3G013080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	519
AccII	CGCG	1 cut(s)	321
AciI	CCGC	7 cut(s)	217, 243, 246, 276, 343, 369, 681
AclWI	GGATC	5 cut(s)	49, 102, 114, 227, 552
AcoI	YGGCCR	1 cut(s)	337
AcsI	RAATTY	1 cut(s)	665
AcyI	GRCGYC	1 cut(s)	516
AfiI	CCNNNNNNNGG	3 cut(s)	43, 139, 310
AgsI	TTSAA	4 cut(s)	34, 139, 624, 665
AluBI	AGCT	6 cut(s)	30, 72, 92, 374, 406, 502
AluI	AGCT	6 cut(s)	30, 72, 92, 374, 406, 502
Alw21I	GWGCWC	2 cut(s)	477, 504
Alw26I	GTCTC	2 cut(s)	262, 295
Alw44I	GTGCAC	1 cut(s)	473
AlwI	GGATC	5 cut(s)	49, 102, 114, 227, 552
Ama87I	CYCGRG	1 cut(s)	490
AoxI	GGCC	2 cut(s)	223, 337
ApaLI	GTGCAC	1 cut(s)	473
ApeKI	GCWGC	2 cut(s)	145, 349
ApoI	RAATTY	1 cut(s)	665
AspLEI	GCGC	2 cut(s)	150, 334
AspS9I	GGNCC	2 cut(s)	224, 387
AsuHPI	GGTGA	1 cut(s)	355
AvaI	CYCGRG	1 cut(s)	490
AvaII	GGWCC	1 cut(s)	387
BaeGI	GKGCMC	1 cut(s)	477
BanII	GRGCYC	1 cut(s)	504
Bbv12I	GWGCWC	2 cut(s)	477, 504
BbvCI	CCTCAGC	1 cut(s)	68
BbvI	GCAGC	2 cut(s)	157, 336
BccI	CCATC	2 cut(s)	67, 131
BcgI	CGANNNNNNTGC	2 cut(s)	160, 194
BcoDI	GTCTC	2 cut(s)	262, 295
BfaI	CTAG	1 cut(s)	644
BfoI	RGCGCY	1 cut(s)	151
BglII	AGATCT	1 cut(s)	549
BisI	GCNGC	3 cut(s)	146, 246, 350
BlsI	GCNGC	3 cut(s)	147, 247, 351
Bme18I	GGWCC	1 cut(s)	387
BmeT110I	CYCGRG	1 cut(s)	490
BmgT120I	GGNCC	2 cut(s)	224, 387
BmiI	GGNNCC	5 cut(s)	184, 226, 388, 389, 488
BmrI	ACTGGG	2 cut(s)	462, 593
BmuI	ACTGGG	2 cut(s)	462, 593
BpmI	CTGGAG	3 cut(s)	185, 244, 557
Bpu10I	CCTNAGC	1 cut(s)	68
BsaHI	GRCGYC	1 cut(s)	516
BsaJI	CCNNGG	3 cut(s)	220, 309, 491
BsaXI	ACNNNNNCTCC	4 cut(s)	76, 106, 275, 305
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 139, 310
Bse118I	RCCGGY	1 cut(s)	365
Bse1I	ACTGG	2 cut(s)	457, 599
BseDI	CCNNGG	3 cut(s)	220, 309, 491
BseGI	GGATG	2 cut(s)	159, 195
BseLI	CCNNNNNNNGG	3 cut(s)	43, 139, 310
BseMII	CTCAG	1 cut(s)	82
BseNI	ACTGG	2 cut(s)	457, 599
BseRI	GAGGAG	1 cut(s)	143
BseSI	GKGCMC	1 cut(s)	477
BseXI	GCAGC	2 cut(s)	157, 336
BseYI	CCCAGC	1 cut(s)	374
Bsh1236I	CGCG	1 cut(s)	321
Bsh1285I	CGRYCG	1 cut(s)	319
BshFI	GGCC	2 cut(s)	225, 339
BsiEI	CGRYCG	1 cut(s)	319
BsiHKAI	GWGCWC	2 cut(s)	477, 504
BsiHKCI	CYCGRG	1 cut(s)	490
BsiSI	CCGG	1 cut(s)	366
BslFI	GGGAC	3 cut(s)	59, 308, 373
BslI	CCNNNNNNNGG	3 cut(s)	43, 139, 310
BsmAI	GTCTC	2 cut(s)	262, 295
BsmBI	CGTCTC	2 cut(s)	262, 295
BsmFI	GGGAC	3 cut(s)	59, 308, 373
BsmI	GAATGC	1 cut(s)	171
BsnI	GGCC	2 cut(s)	225, 339
BsoBI	CYCGRG	1 cut(s)	490
Bsp1286I	GDGCHC	2 cut(s)	477, 504
Bsp143I	GATC	6 cut(s)	54, 107, 119, 232, 544, 549
BspACI	CCGC	7 cut(s)	217, 243, 246, 276, 343, 369, 681
BspANI	GGCC	2 cut(s)	225, 339
BspCNI	CTCAG	1 cut(s)	81
BspFNI	CGCG	1 cut(s)	321
BspLI	GGNNCC	5 cut(s)	184, 226, 388, 389, 488
BspPI	GGATC	5 cut(s)	49, 102, 114, 227, 552
BsrFI	RCCGGY	1 cut(s)	365
BsrI	ACTGG	2 cut(s)	457, 599
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	3 cut(s)	220, 309, 491
BssMI	GATC	6 cut(s)	54, 107, 119, 232, 544, 549
BssNI	GRCGYC	1 cut(s)	516
BssT1I	CCWWGG	1 cut(s)	309
Bst6I	CTCTTC	3 cut(s)	45, 140, 161
BstACI	GRCGYC	1 cut(s)	516
BstC8I	GCNNGC	2 cut(s)	341, 565
BstDEI	CTNAG	1 cut(s)	68
BstENI	CCTNNNNNAGG	1 cut(s)	137
BstF5I	GGATG	2 cut(s)	159, 195
BstFNI	CGCG	1 cut(s)	321
BstH2I	RGCGCY	1 cut(s)	151
BstHHI	GCGC	2 cut(s)	150, 334
BstKTI	GATC	6 cut(s)	57, 110, 122, 235, 547, 552
BstMAI	GTCTC	2 cut(s)	262, 295
BstMBI	GATC	6 cut(s)	54, 107, 119, 232, 544, 549
BstMCI	CGRYCG	1 cut(s)	319
BstMWI	GCNNNNNNNGC	5 cut(s)	340, 349, 508, 532, 569
BstSLI	GKGCMC	1 cut(s)	477
BstUI	CGCG	1 cut(s)	321
BstV1I	GCAGC	2 cut(s)	157, 336
BstX2I	RGATCY	3 cut(s)	54, 119, 549
BstYI	RGATCY	3 cut(s)	54, 119, 549
BsuRI	GGCC	2 cut(s)	225, 339
BtsCI	GGATG	2 cut(s)	159, 195
BtsIMutI	CAGTG	1 cut(s)	450
Cac8I	GCNNGC	2 cut(s)	341, 565
CfoI	GCGC	2 cut(s)	150, 334
Cfr10I	RCCGGY	1 cut(s)	365
Cfr13I	GGNCC	2 cut(s)	224, 387
CseI	GACGC	1 cut(s)	310
CviAII	CATG	1 cut(s)	305
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	6 cut(s)	56, 109, 121, 234, 546, 551
DpnII	GATC	6 cut(s)	54, 107, 119, 232, 544, 549
EaeI	YGGCCR	1 cut(s)	337
Eam1104I	CTCTTC	3 cut(s)	45, 140, 161
EarI	CTCTTC	3 cut(s)	45, 140, 161
EciI	GGCGGA	2 cut(s)	232, 384
Ecl136II	GAGCTC	1 cut(s)	502
Eco130I	CCWWGG	1 cut(s)	309
Eco24I	GRGCYC	1 cut(s)	504
Eco47I	GGWCC	1 cut(s)	387
Eco53kI	GAGCTC	1 cut(s)	502
Eco88I	CYCGRG	1 cut(s)	490
EcoICRI	GAGCTC	1 cut(s)	502
EcoNI	CCTNNNNNAGG	1 cut(s)	137
EcoO109I	RGGNCCY	1 cut(s)	387
EcoRI	GAATTC	1 cut(s)	665
EcoT14I	CCWWGG	1 cut(s)	309
EcoT38I	GRGCYC	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	309
Esp3I	CGTCTC	2 cut(s)	262, 295
FaeI	CATG	1 cut(s)	308
FaiI	YATR	4 cut(s)	306, 594, 614, 633
FaqI	GGGAC	3 cut(s)	59, 308, 373
FatI	CATG	1 cut(s)	304
FauI	CCCGC	1 cut(s)	224
Fnu4HI	GCNGC	3 cut(s)	146, 246, 350
FokI	GGATG	2 cut(s)	146, 182
FriOI	GRGCYC	1 cut(s)	504
Fsp4HI	GCNGC	3 cut(s)	146, 246, 350
FspBI	CTAG	1 cut(s)	644
GlaI	GCGC	2 cut(s)	149, 333
GluI	GCNGC	3 cut(s)	146, 246, 350
GsaI	CCCAGC	1 cut(s)	378
GsuI	CTGGAG	3 cut(s)	185, 244, 557
HaeII	RGCGCY	1 cut(s)	151
HaeIII	GGCC	2 cut(s)	225, 339
HapII	CCGG	1 cut(s)	366
HgaI	GACGC	1 cut(s)	310
HhaI	GCGC	2 cut(s)	150, 334
Hin1I	GRCGYC	1 cut(s)	516
Hin1II	CATG	1 cut(s)	308
Hin6I	GCGC	2 cut(s)	148, 332
HinP1I	GCGC	2 cut(s)	148, 332
HindIII	AAGCTT	1 cut(s)	28
HinfI	GANTC	2 cut(s)	354, 529
HpaII	CCGG	1 cut(s)	366
HphI	GGTGA	1 cut(s)	355
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	2 cut(s)	232, 549
Hpy188III	TCNNGA	3 cut(s)	261, 484, 604
Hpy8I	GTNNAC	1 cut(s)	475
Hpy99I	CGWCG	7 cut(s)	45, 170, 362, 386, 518, 521, 524
HpyAV	CCTTC	3 cut(s)	199, 277, 454
HpyCH4IV	ACGT	1 cut(s)	516
HpyCH4V	TGCA	2 cut(s)	16, 475
HpyF10VI	GCNNNNNNNGC	5 cut(s)	340, 349, 508, 532, 569
HpyF3I	CTNAG	1 cut(s)	68
HpySE526I	ACGT	1 cut(s)	516
Hsp92I	GRCGYC	1 cut(s)	516
Hsp92II	CATG	1 cut(s)	308
HspAI	GCGC	2 cut(s)	148, 332
KflI	GGGWCCC	1 cut(s)	387
Kzo9I	GATC	6 cut(s)	54, 107, 119, 232, 544, 549
LmnI	GCTCC	5 cut(s)	77, 97, 142, 188, 371
Lsp1109I	GCAGC	2 cut(s)	157, 336
MaeI	CTAG	1 cut(s)	644
MaeII	ACGT	1 cut(s)	516
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	6 cut(s)	56, 109, 121, 234, 546, 551
MboI	GATC	6 cut(s)	54, 107, 119, 232, 544, 549
MboII	GAAGA	5 cut(s)	62, 127, 148, 184, 439
MflI	RGATCY	3 cut(s)	54, 119, 549
MhlI	GDGCHC	2 cut(s)	477, 504
MluCI	AATT	3 cut(s)	442, 628, 665
MspA1I	CMGCKG	1 cut(s)	343
MspI	CCGG	1 cut(s)	366
Mva1269I	GAATGC	1 cut(s)	171
MvnI	CGCG	1 cut(s)	321
MwoI	GCNNNNNNNGC	5 cut(s)	340, 349, 508, 532, 569
NdeII	GATC	6 cut(s)	54, 107, 119, 232, 544, 549
NlaIII	CATG	1 cut(s)	308
NlaIV	GGNNCC	5 cut(s)	184, 226, 388, 389, 488
NmeAIII	GCCGAG	2 cut(s)	201, 315
NmuCI	GTSAC	1 cut(s)	361
PcsI	WCGNNNNNNNCGW	2 cut(s)	228, 519
PctI	GAATGC	1 cut(s)	171
PfeI	GAWTC	2 cut(s)	354, 529
PflFI	GACNNNGTC	2 cut(s)	287, 518
PkrI	GCNGC	3 cut(s)	147, 247, 351
PpuMI	RGGWCCY	1 cut(s)	387
Psp124BI	GAGCTC	1 cut(s)	504
Psp5II	RGGWCCY	1 cut(s)	387
PspFI	CCCAGC	1 cut(s)	374
PspN4I	GGNNCC	5 cut(s)	184, 226, 388, 389, 488
PspPI	GGNCC	2 cut(s)	224, 387
PspPPI	RGGWCCY	1 cut(s)	387
PsuI	RGATCY	3 cut(s)	54, 119, 549
PsyI	GACNNNGTC	2 cut(s)	287, 518
SacI	GAGCTC	1 cut(s)	504
SatI	GCNGC	3 cut(s)	146, 246, 350
Sau3AI	GATC	6 cut(s)	54, 107, 119, 232, 544, 549
Sau96I	GGNCC	2 cut(s)	224, 387
SduI	GDGCHC	2 cut(s)	477, 504
SgrAI	CRCCGGYG	1 cut(s)	365
SinI	GGWCC	1 cut(s)	387
Sse9I	AATT	3 cut(s)	442, 628, 665
SsiI	CCGC	7 cut(s)	217, 243, 246, 276, 343, 369, 681
SspMI	CTAG	1 cut(s)	644
SstI	GAGCTC	1 cut(s)	504
StyI	CCWWGG	1 cut(s)	309
TaiI	ACGT	1 cut(s)	519
TaqI	TCGA	3 cut(s)	62, 498, 522
TaqII	GACCGA	1 cut(s)	305
TasI	AATT	3 cut(s)	442, 628, 665
TauI	GCSGC	1 cut(s)	248
TfiI	GAWTC	2 cut(s)	354, 529
TscAI	CASTG	1 cut(s)	457
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	2 cut(s)	145, 349
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	5 cut(s)	20, 148, 184, 572, 686
TspGWI	ACGGA	1 cut(s)	244
TspRI	CASTG	1 cut(s)	457
Tth111I	GACNNNGTC	2 cut(s)	287, 518
VneI	GTGCAC	1 cut(s)	473
VpaK11BI	GGWCC	1 cut(s)	387
XagI	CCTNNNNNAGG	1 cut(s)	137
XapI	RAATTY	1 cut(s)	665
XspI	CTAG	1 cut(s)	644
ZraI	GACGTC	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.