Rw3G013080

UDP-glucuronic acid decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0008196
Physical Location & Seq
Reverse (-)
12875100 .. 12878774
3675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G013080.1

Sequence Viewer

Length: 1044 bp
ATGAAACAGCTACACAAGCAACCGAGCGTGAATCACAGGAGGGACGAAGAGATCCCAACCTCCCTATCCTCCTCCTACTCCCCCAAAGCCTTCAAGCACCCCAGATCTCTCCCCAGATCCATCAACTACATCTTCAGAGAGCAACGCCTCCTCTTCATCCTCGTCGGCATTCTCATCGGCTCCACCTTCTTCATCCTCCAGCCCACTCTCTCCCGCCTCTCCCCTTCCGAGCCCAATCCCTCCATCCCCCGATCCTTCTCCTCCTCCTCCCTCCACGACCGTATCAACACCGCCTCCTTCTCCACCGACCTCCGCAGCAACGCCGGCAGGGTCCCCGCCGGCCTCGGCAAGCGCAGGCTCAGGATCGTCGTCACCGGTGGCGCCGGCTTCGTCGGCTCCCACCTCGTCGATCAGTTGCTCTCCAGAGGGAACGATGTCATCGTCATTGACAATTTCTTCACCGGGAGGAAGGAGAATGTGGCGCACCATTTCGGGAATCCCAGGTTCGAGCTCATTCGCCACGACGTCGTTGAGCCGATTCTGCTGGAGGTCGATCAGATCTACCATCTGGCCTGCCCGGCCTCGCCTGTTCACTACAAGTACAATCCGGTCAAGACAATCAAGACCAATGTGATGGGGACCCTTAATATGCTTGGCCTTGCGAAGCGAATTGGGGCTAGGTTTTTGATCACTAGTACCAGTGAGGTCTATGGTGATCCACTGGAGCATCCTCAGAAGGAGACTTACTGGGGAAATGTCAATCCTATAGGTGAGAGGAGCTGTTATGACGAAGGAAAGAGGACGGCAGAGACACTGGCAATGGATTATCATCGAGGTGCTGGTGTTGAGGTTCGTATTGCTCGAATTTTCAATACATATGGGCCACGTATGTGTTTGGATGATGGGCGTGTTGTCAGCAATTTTGTTGCTCAGGCTATCCGCAAACAACCATTGACTGTGTACGGTGATGGTAAACAAACACGAAGCTTCCAATATGTCTCTGATTTGGTATGGAAGTTTTTTCTCTTTTTCCTTTTCTCTTAA

Protein Analysis

347

Amino Acids

39.21

Weight (kDa)

9.79

Isoelectric Point (pI)

44.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RmlD_sub_bind PF04321 121 - 321 1.9e-06 RmlD substrate binding domain
Epimerase PF01370 122 - 337 4.5e-46 NAD dependent epimerase/dehydratase family
Polysacc_synt_2 PF02719 122 - 232 2.6e-06 Polysaccharide biosynthesis protein
3Beta_HSD PF01073 123 - 340 4.4e-15 3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd PF16363 124 - 338 5.1e-48 GDP-mannose 4,6 dehydratase
NAD_binding_4 PF07993 177 - 289 1.2e-06 Male sterility protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 528
AccB1I GGYRCC 1 cut(s) 380
AciI CCGC 5 cut(s) 214, 291, 313, 336, 940
AclWI GGATC 5 cut(s) 46, 111, 246, 371, 710
AcsI RAATTY 1 cut(s) 864
AcuI CTGAAG 1 cut(s) 118
AcyI GRCGYC 2 cut(s) 381, 525
AfaI GTAC 3 cut(s) 602, 697, 962
AgeI ACCGGT 1 cut(s) 374
AgsI TTSAA 2 cut(s) 94, 871
AhlI ACTAGT 1 cut(s) 692
AjnI CCWGG 1 cut(s) 500
AleI CACNNNNGTG 1 cut(s) 889
AluBI AGCT 4 cut(s) 10, 511, 780, 987
AluI AGCT 4 cut(s) 10, 511, 780, 987
Alw21I GWGCWC 1 cut(s) 513
Alw26I GTCTC 3 cut(s) 734, 803, 1003
AlwI GGATC 5 cut(s) 46, 111, 246, 371, 710
AoxI GGCC 5 cut(s) 340, 570, 579, 655, 881
ApeKI GCWGC 1 cut(s) 315
ApoI RAATTY 1 cut(s) 864
AsiGI ACCGGT 1 cut(s) 374
AspLEI GCGC 3 cut(s) 354, 383, 484
AspS9I GGNCC 3 cut(s) 331, 639, 881
AsuC2I CCSGG 2 cut(s) 463, 578
AsuHPI GGTGA 5 cut(s) 364, 451, 725, 782, 977
AvaII GGWCC 2 cut(s) 331, 639
BaeI ACNNNNGTAYC 2 cut(s) 265, 298
BanI GGYRCC 1 cut(s) 380
BanII GRGCYC 2 cut(s) 234, 513
BarI GAAGNNNNNNTAC 2 cut(s) 728, 760
Bbv12I GWGCWC 1 cut(s) 513
BbvI GCAGC 1 cut(s) 327
BccI CCATC 6 cut(s) 128, 251, 573, 628, 896, 962
BceAI ACGGC 1 cut(s) 819
BcgI CGANNNNNNTGC 2 cut(s) 157, 191
BciT130I CCWGG 1 cut(s) 502
BclI TGATCA 1 cut(s) 687
BcnI CCSGG 2 cut(s) 463, 578
BcoDI GTCTC 3 cut(s) 734, 803, 1003
BcuI ACTAGT 1 cut(s) 692
BfaI CTAG 2 cut(s) 678, 693
BfmI CTRYAG 1 cut(s) 765
BfoI RGCGCY 1 cut(s) 384
BglI GCCNNNNNGGC 1 cut(s) 578
BglII AGATCT 2 cut(s) 104, 558
BisI GCNGC 1 cut(s) 316
BlsI GCNGC 1 cut(s) 317
Bme1390I CCNGG 3 cut(s) 463, 502, 578
Bme18I GGWCC 2 cut(s) 331, 639
BmgT120I GGNCC 3 cut(s) 331, 639, 881
BmiI GGNNCC 7 cut(s) 181, 332, 333, 382, 397, 640, 641
BmrFI CCNGG 3 cut(s) 463, 502, 578
BmrI ACTGGG 1 cut(s) 757
BmsI GCATC 1 cut(s) 736
BmuI ACTGGG 1 cut(s) 757
BpmI CTGGAG 4 cut(s) 182, 406, 566, 743
Bpu10I CCTNAGC 2 cut(s) 359, 930
BpuMI CCSGG 2 cut(s) 463, 578
BsaAI YACGTR 1 cut(s) 887
BsaBI GATNNNNATC 1 cut(s) 828
BsaHI GRCGYC 2 cut(s) 381, 525
BsaJI CCNNGG 2 cut(s) 343, 500
BsaWI WCCGGW 2 cut(s) 374, 607
BsaXI ACNNNNNCTCC 2 cut(s) 278, 308
Bse118I RCCGGY 4 cut(s) 323, 338, 374, 383
Bse1I ACTGG 4 cut(s) 699, 726, 752, 819
Bse3DI GCAATG 1 cut(s) 825
Bse8I GATNNNNATC 1 cut(s) 828
BseBI CCWGG 1 cut(s) 502
BseDI CCNNGG 2 cut(s) 343, 500
BseGI GGATG 5 cut(s) 156, 192, 243, 727, 904
BseJI GATNNNNATC 1 cut(s) 828
BseMI GCAATG 1 cut(s) 825
BseMII CTCAG 3 cut(s) 373, 746, 944
BseNI ACTGG 4 cut(s) 699, 726, 752, 819
BseRI GAGGAG 6 cut(s) 61, 140, 250, 253, 256, 790
BseXI GCAGC 1 cut(s) 327
Bsh1285I CGRYCG 1 cut(s) 280
BshFI GGCC 5 cut(s) 342, 572, 581, 657, 883
BshNI GGYRCC 1 cut(s) 380
BshTI ACCGGT 1 cut(s) 374
BsiEI CGRYCG 1 cut(s) 280
BsiHKAI GWGCWC 1 cut(s) 513
BsiSI CCGG 7 cut(s) 324, 339, 375, 384, 462, 578, 608
BslFI GGGAC 3 cut(s) 56, 317, 652
BsmAI GTCTC 3 cut(s) 734, 803, 1003
BsmFI GGGAC 3 cut(s) 56, 317, 652
BsmI GAATGC 1 cut(s) 168
BsnI GGCC 5 cut(s) 342, 572, 581, 657, 883
Bsp1286I GDGCHC 2 cut(s) 234, 513
BspACI CCGC 5 cut(s) 214, 291, 313, 336, 940
BspANI GGCC 5 cut(s) 342, 572, 581, 657, 883
BspCNI CTCAG 3 cut(s) 372, 745, 943
BspLI GGNNCC 7 cut(s) 181, 332, 333, 382, 397, 640, 641
BspPI GGATC 5 cut(s) 46, 111, 246, 371, 710
BspT107I GGYRCC 1 cut(s) 380
BsrDI GCAATG 1 cut(s) 825
BsrFI RCCGGY 4 cut(s) 323, 338, 374, 383
BsrI ACTGG 4 cut(s) 699, 726, 752, 819
BssAI RCCGGY 4 cut(s) 323, 338, 374, 383
BssECI CCNNGG 2 cut(s) 343, 500
BssNI GRCGYC 2 cut(s) 381, 525
Bst2UI CCWGG 1 cut(s) 502
Bst4CI ACNGT 3 cut(s) 281, 958, 965
Bst6I CTCTTC 2 cut(s) 42, 158
BstACI GRCGYC 2 cut(s) 381, 525
BstBAI YACGTR 1 cut(s) 887
BstC8I GCNNGC 6 cut(s) 325, 340, 350, 356, 385, 574
BstDEI CTNAG 3 cut(s) 359, 732, 930
BstF5I GGATG 5 cut(s) 156, 192, 243, 727, 904
BstH2I RGCGCY 1 cut(s) 384
BstHHI GCGC 3 cut(s) 354, 383, 484
BstMAI GTCTC 3 cut(s) 734, 803, 1003
BstMCI CGRYCG 1 cut(s) 280
BstMWI GCNNNNNNNGC 5 cut(s) 16, 324, 393, 541, 578
BstNI CCWGG 1 cut(s) 502
BstSCI CCNGG 3 cut(s) 461, 500, 576
BstSFI CTRYAG 1 cut(s) 765
BstV1I GCAGC 1 cut(s) 327
BstX2I RGATCY 4 cut(s) 51, 104, 116, 558
BstXI CCANNNNNNTGG 1 cut(s) 634
BstYI RGATCY 4 cut(s) 51, 104, 116, 558
BsuRI GGCC 5 cut(s) 342, 572, 581, 657, 883
BtsCI GGATG 5 cut(s) 156, 192, 243, 727, 904
BtsIMutI CAGTG 3 cut(s) 706, 719, 812
Cac8I GCNNGC 6 cut(s) 325, 340, 350, 356, 385, 574
CfoI GCGC 3 cut(s) 354, 383, 484
Cfr10I RCCGGY 4 cut(s) 323, 338, 374, 383
Cfr13I GGNCC 3 cut(s) 331, 639, 881
Csp6I GTAC 3 cut(s) 601, 696, 961
CspAI ACCGGT 1 cut(s) 374
CviQI GTAC 3 cut(s) 601, 696, 961
DdeI CTNAG 3 cut(s) 359, 732, 930
DinI GGCGCC 1 cut(s) 382
Eam1104I CTCTTC 2 cut(s) 42, 158
EarI CTCTTC 2 cut(s) 42, 158
Ecl136II GAGCTC 1 cut(s) 511
Eco24I GRGCYC 2 cut(s) 234, 513
Eco47I GGWCC 2 cut(s) 331, 639
Eco53kI GAGCTC 1 cut(s) 511
Eco57I CTGAAG 1 cut(s) 118
EcoICRI GAGCTC 1 cut(s) 511
EcoO109I RGGNCCY 2 cut(s) 331, 639
EcoRII CCWGG 1 cut(s) 500
EcoT38I GRGCYC 2 cut(s) 234, 513
EgeI GGCGCC 1 cut(s) 382
EheI GGCGCC 1 cut(s) 382
FaiI YATR 9 cut(s) 650, 711, 767, 786, 877, 879, 890, 996, 1012
FaqI GGGAC 3 cut(s) 56, 317, 652
FauI CCCGC 2 cut(s) 221, 343
FauNDI CATATG 1 cut(s) 877
FbaI TGATCA 1 cut(s) 687
Fnu4HI GCNGC 1 cut(s) 316
FokI GGATG 5 cut(s) 143, 179, 230, 714, 911
FriOI GRGCYC 2 cut(s) 234, 513
Fsp4HI GCNGC 1 cut(s) 316
FspBI CTAG 2 cut(s) 678, 693
GlaI GCGC 3 cut(s) 353, 382, 483
GluI GCNGC 1 cut(s) 316
GsuI CTGGAG 4 cut(s) 182, 406, 566, 743
HaeII RGCGCY 1 cut(s) 384
HaeIII GGCC 5 cut(s) 342, 572, 581, 657, 883
HapII CCGG 7 cut(s) 324, 339, 375, 384, 462, 578, 608
HhaI GCGC 3 cut(s) 354, 383, 484
Hin1I GRCGYC 2 cut(s) 381, 525
Hin6I GCGC 3 cut(s) 352, 381, 482
HinP1I GCGC 3 cut(s) 352, 381, 482
HindIII AAGCTT 1 cut(s) 985
HinfI GANTC 3 cut(s) 31, 496, 538
HpaII CCGG 7 cut(s) 324, 339, 375, 384, 462, 578, 608
HphI GGTGA 5 cut(s) 364, 451, 725, 782, 977
Hpy166II GTNNAC 3 cut(s) 592, 961, 974
Hpy188I TCNGA 5 cut(s) 137, 229, 558, 735, 1003
Hpy188III TCNNGA 5 cut(s) 361, 423, 493, 613, 622
Hpy8I GTNNAC 3 cut(s) 592, 961, 974
Hpy99I CGWCG 6 cut(s) 167, 371, 395, 410, 527, 530
HpyAV CCTTC 8 cut(s) 100, 196, 234, 265, 307, 463, 730, 785
HpyCH4III ACNGT 3 cut(s) 281, 958, 965
HpyCH4IV ACGT 2 cut(s) 525, 886
HpyF10VI GCNNNNNNNGC 5 cut(s) 16, 324, 393, 541, 578
HpyF3I CTNAG 3 cut(s) 359, 732, 930
HpySE526I ACGT 2 cut(s) 525, 886
Hsp92I GRCGYC 2 cut(s) 381, 525
HspAI GCGC 3 cut(s) 352, 381, 482
KasI GGCGCC 1 cut(s) 380
KflI GGGWCCC 2 cut(s) 331, 639
KroI GCCGGC 3 cut(s) 323, 338, 383
KroNI GCCGGC 3 cut(s) 325, 340, 385
Ksp22I TGATCA 1 cut(s) 687
LmnI GCTCC 4 cut(s) 185, 401, 724, 777
Lsp1109I GCAGC 1 cut(s) 327
LweI GCATC 1 cut(s) 736
MaeI CTAG 2 cut(s) 678, 693
MaeII ACGT 2 cut(s) 525, 886
MaeIII GTNAC 1 cut(s) 370
MboII GAAGA 5 cut(s) 59, 124, 145, 181, 448
MflI RGATCY 4 cut(s) 51, 104, 116, 558
MhlI GDGCHC 2 cut(s) 234, 513
MluCI AATT 4 cut(s) 451, 669, 864, 919
Mly113I GGCGCC 1 cut(s) 381
MroNI GCCGGC 3 cut(s) 323, 338, 383
MseI TTAA 2 cut(s) 645, 1042
MslI CAYNNNNRTG 2 cut(s) 834, 889
MspI CCGG 7 cut(s) 324, 339, 375, 384, 462, 578, 608
MspR9I CCNGG 3 cut(s) 463, 502, 578
Mva1269I GAATGC 1 cut(s) 168
MvaI CCWGG 1 cut(s) 502
MwoI GCNNNNNNNGC 5 cut(s) 16, 324, 393, 541, 578
NaeI GCCGGC 3 cut(s) 325, 340, 385
NarI GGCGCC 1 cut(s) 381
NciI CCSGG 2 cut(s) 463, 578
NdeI CATATG 1 cut(s) 877
NgoMIV GCCGGC 3 cut(s) 323, 338, 383
NlaIV GGNNCC 7 cut(s) 181, 332, 333, 382, 397, 640, 641
NmeAIII GCCGAG 1 cut(s) 324
NmuCI GTSAC 1 cut(s) 370
OliI CACNNNNGTG 1 cut(s) 889
PcsI WCGNNNNNNNCGW 2 cut(s) 438, 859
PctI GAATGC 1 cut(s) 168
PdiI GCCGGC 3 cut(s) 325, 340, 385
PfeI GAWTC 3 cut(s) 31, 496, 538
PinAI ACCGGT 1 cut(s) 374
PkrI GCNGC 1 cut(s) 317
PluTI GGCGCC 1 cut(s) 384
Ppu21I YACGTR 1 cut(s) 887
PpuMI RGGWCCY 2 cut(s) 331, 639
Psp124BI GAGCTC 1 cut(s) 513
Psp5II RGGWCCY 2 cut(s) 331, 639
Psp6I CCWGG 1 cut(s) 500
PspGI CCWGG 1 cut(s) 500
PspN4I GGNNCC 7 cut(s) 181, 332, 333, 382, 397, 640, 641
PspPI GGNCC 3 cut(s) 331, 639, 881
PspPPI RGGWCCY 2 cut(s) 331, 639
PsuI RGATCY 4 cut(s) 51, 104, 116, 558
RsaI GTAC 3 cut(s) 602, 697, 962
RsaNI GTAC 3 cut(s) 601, 696, 961
RseI CAYNNNNRTG 2 cut(s) 834, 889
SacI GAGCTC 1 cut(s) 513
SaqAI TTAA 2 cut(s) 645, 1042
SatI GCNGC 1 cut(s) 316
Sau96I GGNCC 3 cut(s) 331, 639, 881
ScrFI CCNGG 3 cut(s) 463, 502, 578
SduI GDGCHC 2 cut(s) 234, 513
SfaNI GCATC 1 cut(s) 736
SfcI CTRYAG 1 cut(s) 765
SfiI GGCCNNNNNGGCC 1 cut(s) 578
SfoI GGCGCC 1 cut(s) 382
SgrAI CRCCGGYG 1 cut(s) 374
SinI GGWCC 2 cut(s) 331, 639
SmiMI CAYNNNNRTG 2 cut(s) 834, 889
SpeI ACTAGT 1 cut(s) 692
Sse9I AATT 4 cut(s) 451, 669, 864, 919
SsiI CCGC 5 cut(s) 214, 291, 313, 336, 940
SspDI GGCGCC 1 cut(s) 380
SspMI CTAG 2 cut(s) 678, 693
SstI GAGCTC 1 cut(s) 513
StyD4I CCNGG 3 cut(s) 461, 500, 576
TaaI ACNGT 3 cut(s) 281, 958, 965
TaiI ACGT 2 cut(s) 528, 889
TaqI TCGA 5 cut(s) 408, 507, 552, 832, 862
TasI AATT 4 cut(s) 451, 669, 864, 919
TatI WGTACW 1 cut(s) 600
TfiI GAWTC 3 cut(s) 31, 496, 538
Tru1I TTAA 2 cut(s) 645, 1042
Tru9I TTAA 2 cut(s) 645, 1042
TscAI CASTG 3 cut(s) 706, 726, 819
TseFI GTSAC 1 cut(s) 370
TseI GCWGC 1 cut(s) 315
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 3 cut(s) 17, 145, 181
TspRI CASTG 3 cut(s) 706, 726, 819
VpaK11BI GGWCC 2 cut(s) 331, 639
XapI RAATTY 1 cut(s) 864
XspI CTAG 2 cut(s) 678, 693
ZraI GACGTC 1 cut(s) 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.