Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0009534

Physical Location & Seq

Genomic Coordinates Forward (+)

13656304 .. 13658272

Gene Structure 1969 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGGGGAACCGATTCTTAAGGCGTCAGATGTGCCTACCAAACTGCCTGCAAACAAAGATCAATCTGTCGTTAAGTTGGGTCTTGATGTAGATGGAGTAACCTGGAATGTAACCTGTGTTAACATGGGAAATCCTCATTGTGTAACATTTGGAACAGAAGGAGGCCAGAATTTGAAGGTTGATGAATTGAAGTTAGCTGACATCGGTCCCAAATTTGAGGATCATGAGTTGTTTCCAGCACGAACTAACACAGAATTTGTGCAAGTTTTCACACCTTCACACCTAAAGATGCGTGTTTGGGAGCGTAGGGCAGGAGCAACGCTTGCTTGCGGAACTGGTGCTTGTGCTGTAGTAGTTGCTGCAGCTCTTGAGGGTCGTGCTGGGCGGAATTGCACGGTTGATCTACCGGGAGGGCCATTGCAGATTGAGTGGAGGGAGGAGAACAACCACATCTACCGGCTGAAGTCGTATTTTACGTATCGGTGCCTCTGTGATTTCTTTTCACAAGGTTGTCTTTGGATGAAGCATGAAGATGGATTTTGTGATTTAAATTTTCCGAGTTATGTAGAATTGCAAGTAAAAAACACCTGTGGAGTCGGAGACGTTGAATATATCATGTGTTTGCTTTATGAAAGTTTGAATGCCCCCAGTTGTGTTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006553 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008837 GO:0009058 GO:0009066 GO:0009067 GO:0009085 GO:0009089 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016853 GO:0016854 GO:0016855 GO:0019752 GO:0036361 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046451 GO:0047661 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00300 ko01100 ko01110 ko01120 ko01130 ko01230 map00300 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

DAP_epimerase

Protein Analysis

221

Amino Acids

24.34

Weight (kDa)

5.25

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAP_epimerase	PF01678	39 - 151	2.2e-28	Diaminopimelate epimerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53580
fragaria_vesca	FvH4_6g14490
malus_domestica	MD04G1119400.v1.1 MD07G1084600.v1.1 MD07G1085800.v1.1 MD12G1136700.v1.1
prunus_persica	Prupe.6G249100_v2.0.a1 Prupe.6G249100_v2.0.a1
pyrus_communis	pycom04g10870 pycom07g06870 pycom12g13120
rosa_chinensis	RchiOBHm_Chr3g0467571
rosa_laevigata	RLG00000024489
rosa_multiflora	Rmu_sc0000679.1_g000030 Rmu_sc0011632.1_g000016
rosa_roxburghii	Rroxscaffold_6G00413580
rosa_rugosa	Rorug03G0088200
rosa_samantha	Rh3AG136200 Rh3BG158100 Rh3CG157900 Rh3DG158700
rosa_wichuraiana	Rw3G012930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	483
AciI	CCGC	2 cut(s)	330, 385
AclWI	GGATC	1 cut(s)	228
AcsI	RAATTY	4 cut(s)	169, 212, 254, 550
AcuI	CTGAAG	1 cut(s)	482
AcyI	GRCGYC	1 cut(s)	23
AflII	CTTAAG	1 cut(s)	17
AgsI	TTSAA	4 cut(s)	175, 190, 608, 640
AjnI	CCWGG	1 cut(s)	101
AluBI	AGCT	2 cut(s)	197, 365
AluI	AGCT	2 cut(s)	197, 365
Alw26I	GTCTC	1 cut(s)	594
AlwI	GGATC	1 cut(s)	228
AoxI	GGCC	2 cut(s)	163, 413
ApeKI	GCWGC	2 cut(s)	359, 362
ApoI	RAATTY	4 cut(s)	169, 212, 254, 550
Asp700I	GAANNNNTTC	1 cut(s)	12
AspS9I	GGNCC	2 cut(s)	206, 413
AsuC2I	CCSGG	1 cut(s)	408
AvaII	GGWCC	1 cut(s)	206
BanI	GGYRCC	1 cut(s)	483
BbvI	GCAGC	2 cut(s)	346, 374
BccI	CCATC	2 cut(s)	86, 527
BciT130I	CCWGG	1 cut(s)	103
BcnI	CCSGG	1 cut(s)	408
BcoDI	GTCTC	1 cut(s)	594
BfmI	CTRYAG	2 cut(s)	348, 360
BfrI	CTTAAG	1 cut(s)	17
BisI	GCNGC	2 cut(s)	360, 363
BlsI	GCNGC	2 cut(s)	361, 364
Bme1390I	CCNGG	2 cut(s)	103, 408
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	2 cut(s)	206, 413
BmiI	GGNNCC	3 cut(s)	9, 208, 485
BmrFI	CCNGG	2 cut(s)	103, 408
BmrI	ACTGGG	1 cut(s)	642
BmsI	GCATC	1 cut(s)	279
BmuI	ACTGGG	1 cut(s)	642
BoxI	GACNNNNGTC	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	389
BpuMI	CCSGG	1 cut(s)	408
BsaAI	YACGTR	1 cut(s)	477
BsaHI	GRCGYC	1 cut(s)	23
Bse118I	RCCGGY	1 cut(s)	456
Bse1I	ACTGG	2 cut(s)	340, 648
Bse3DI	GCAATG	1 cut(s)	416
BseBI	CCWGG	1 cut(s)	103
BseGI	GGATG	1 cut(s)	525
BseMI	GCAATG	1 cut(s)	416
BseNI	ACTGG	2 cut(s)	340, 648
BseRI	GAGGAG	1 cut(s)	452
BseXI	GCAGC	2 cut(s)	346, 374
BseYI	CCCAGC	1 cut(s)	380
BshFI	GGCC	2 cut(s)	165, 415
BshNI	GGYRCC	1 cut(s)	483
BsiSI	CCGG	2 cut(s)	407, 457
BslFI	GGGAC	1 cut(s)	192
BsmAI	GTCTC	1 cut(s)	594
BsmBI	CGTCTC	1 cut(s)	594
BsmFI	GGGAC	1 cut(s)	192
BsmI	GAATGC	1 cut(s)	646
BsnI	GGCC	2 cut(s)	165, 415
Bsp143I	GATC	3 cut(s)	58, 220, 400
BspACI	CCGC	2 cut(s)	330, 385
BspANI	GGCC	2 cut(s)	165, 415
BspHI	TCATGA	1 cut(s)	223
BspLI	GGNNCC	3 cut(s)	9, 208, 485
BspMAI	CTGCAG	1 cut(s)	364
BspPI	GGATC	1 cut(s)	228
BspT107I	GGYRCC	1 cut(s)	483
BspTI	CTTAAG	1 cut(s)	17
BsrDI	GCAATG	1 cut(s)	416
BsrFI	RCCGGY	1 cut(s)	456
BsrI	ACTGG	2 cut(s)	340, 648
BssAI	RCCGGY	1 cut(s)	456
BssMI	GATC	3 cut(s)	58, 220, 400
BssNI	GRCGYC	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	103
Bst4CI	ACNGT	1 cut(s)	397
BstACI	GRCGYC	1 cut(s)	23
BstAFI	CTTAAG	1 cut(s)	17
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstBAI	YACGTR	1 cut(s)	477
BstC8I	GCNNGC	3 cut(s)	48, 324, 328
BstF5I	GGATG	1 cut(s)	525
BstKTI	GATC	3 cut(s)	61, 223, 403
BstMAI	GTCTC	1 cut(s)	594
BstMBI	GATC	3 cut(s)	58, 220, 400
BstMWI	GCNNNNNNNGC	1 cut(s)	323
BstNI	CCWGG	1 cut(s)	103
BstPAI	GACNNNNGTC	1 cut(s)	204
BstSCI	CCNGG	2 cut(s)	101, 406
BstSFI	CTRYAG	2 cut(s)	348, 360
BstSNI	TACGTA	1 cut(s)	477
BstV1I	GCAGC	2 cut(s)	346, 374
BsuRI	GGCC	2 cut(s)	165, 415
BtsCI	GGATG	1 cut(s)	525
Cac8I	GCNNGC	3 cut(s)	48, 324, 328
CciI	TCATGA	1 cut(s)	223
Cfr10I	RCCGGY	1 cut(s)	456
Cfr13I	GGNCC	2 cut(s)	206, 413
CseI	GACGC	1 cut(s)	12
CviAII	CATG	5 cut(s)	124, 224, 527, 616, 660
CviJI	RGCY	5 cut(s)	165, 197, 365, 415, 460
CviKI_1	RGCY	5 cut(s)	165, 197, 365, 415, 460
DpnI	GATC	3 cut(s)	60, 222, 402
DpnII	GATC	3 cut(s)	58, 220, 400
DraI	TTTAAA	1 cut(s)	549
EciI	GGCGGA	1 cut(s)	400
Eco105I	TACGTA	1 cut(s)	477
Eco47I	GGWCC	1 cut(s)	206
Eco57I	CTGAAG	1 cut(s)	482
EcoRII	CCWGG	1 cut(s)	101
Esp3I	CGTCTC	1 cut(s)	594
FaeI	CATG	5 cut(s)	127, 227, 530, 619, 663
FaiI	YATR	8 cut(s)	125, 225, 528, 564, 612, 617, 630, 661
FalI	AAGNNNNNCTT	2 cut(s)	498, 530
FaqI	GGGAC	1 cut(s)	192
FatI	CATG	5 cut(s)	123, 223, 526, 615, 659
Fnu4HI	GCNGC	2 cut(s)	360, 363
FokI	GGATG	1 cut(s)	532
Fsp4HI	GCNGC	2 cut(s)	360, 363
GluI	GCNGC	2 cut(s)	360, 363
GsaI	CCCAGC	1 cut(s)	384
HaeIII	GGCC	2 cut(s)	165, 415
HapII	CCGG	2 cut(s)	407, 457
HgaI	GACGC	1 cut(s)	12
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	5 cut(s)	127, 227, 530, 619, 663
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	2 cut(s)	13, 594
HpaI	GTTAAC	1 cut(s)	121
HpaII	CCGG	2 cut(s)	407, 457
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	3 cut(s)	28, 558, 599
Hpy188III	TCNNGA	3 cut(s)	83, 224, 368
Hpy8I	GTNNAC	1 cut(s)	121
HpyAV	CCTTC	3 cut(s)	152, 169, 285
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4IV	ACGT	2 cut(s)	476, 603
HpyCH4V	TGCA	6 cut(s)	50, 262, 362, 393, 421, 574
HpyF10VI	GCNNNNNNNGC	1 cut(s)	323
HpySE526I	ACGT	2 cut(s)	476, 603
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	5 cut(s)	127, 227, 530, 619, 663
KspAI	GTTAAC	1 cut(s)	121
Kzo9I	GATC	3 cut(s)	58, 220, 400
LmnI	GCTCC	2 cut(s)	301, 314
Lsp1109I	GCAGC	2 cut(s)	346, 374
LweI	GCATC	1 cut(s)	279
MaeII	ACGT	2 cut(s)	476, 603
MaeIII	GTNAC	3 cut(s)	97, 109, 142
MalI	GATC	3 cut(s)	60, 222, 402
MboI	GATC	3 cut(s)	58, 220, 400
MboII	GAAGA	1 cut(s)	542
MluCI	AATT	7 cut(s)	169, 185, 212, 254, 388, 550, 569
MlyI	GAGTC	1 cut(s)	603
MmeI	TCCRAC	1 cut(s)	577
MnlI	CCTC	8 cut(s)	144, 155, 211, 364, 404, 426, 430, 497
MroXI	GAANNNNTTC	1 cut(s)	12
MseI	TTAA	4 cut(s)	18, 72, 120, 548
MslI	CAYNNNNRTG	1 cut(s)	531
MspCI	CTTAAG	1 cut(s)	17
MspI	CCGG	2 cut(s)	407, 457
MspR9I	CCNGG	2 cut(s)	103, 408
Mva1269I	GAATGC	1 cut(s)	646
MvaI	CCWGG	1 cut(s)	103
MwoI	GCNNNNNNNGC	1 cut(s)	323
NciI	CCSGG	1 cut(s)	408
NdeII	GATC	3 cut(s)	58, 220, 400
NlaIII	CATG	5 cut(s)	127, 227, 530, 619, 663
NlaIV	GGNNCC	3 cut(s)	9, 208, 485
PagI	TCATGA	1 cut(s)	223
PcsI	WCGNNNNNNNCGW	1 cut(s)	473
PctI	GAATGC	1 cut(s)	646
PdmI	GAANNNNTTC	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	13
PkrI	GCNGC	2 cut(s)	361, 364
PleI	GAGTC	1 cut(s)	602
PpsI	GAGTC	1 cut(s)	602
Ppu21I	YACGTR	1 cut(s)	477
PshAI	GACNNNNGTC	1 cut(s)	204
Psp6I	CCWGG	1 cut(s)	101
PspFI	CCCAGC	1 cut(s)	380
PspGI	CCWGG	1 cut(s)	101
PspN4I	GGNNCC	3 cut(s)	9, 208, 485
PspPI	GGNCC	2 cut(s)	206, 413
PstI	CTGCAG	1 cut(s)	364
RseI	CAYNNNNRTG	1 cut(s)	531
SaqAI	TTAA	4 cut(s)	18, 72, 120, 548
SatI	GCNGC	2 cut(s)	360, 363
Sau3AI	GATC	3 cut(s)	58, 220, 400
Sau96I	GGNCC	2 cut(s)	206, 413
SchI	GAGTC	1 cut(s)	603
ScrFI	CCNGG	2 cut(s)	103, 408
SfaNI	GCATC	1 cut(s)	279
SfcI	CTRYAG	2 cut(s)	348, 360
SinI	GGWCC	1 cut(s)	206
SmiI	ATTTAAAT	1 cut(s)	549
SmiMI	CAYNNNNRTG	1 cut(s)	531
SmlI	CTYRAG	2 cut(s)	17, 368
SmoI	CTYRAG	2 cut(s)	17, 368
SnaBI	TACGTA	1 cut(s)	477
Sse9I	AATT	7 cut(s)	169, 185, 212, 254, 388, 550, 569
SsiI	CCGC	2 cut(s)	330, 385
StyD4I	CCNGG	2 cut(s)	101, 406
SwaI	ATTTAAAT	1 cut(s)	549
TaaI	ACNGT	1 cut(s)	397
TaiI	ACGT	2 cut(s)	479, 606
TaqII	GACCGA	1 cut(s)	194
TasI	AATT	7 cut(s)	169, 185, 212, 254, 388, 550, 569
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	4 cut(s)	18, 72, 120, 548
Tru9I	TTAA	4 cut(s)	18, 72, 120, 548
TseI	GCWGC	2 cut(s)	359, 362
TspDTI	ATGAA	4 cut(s)	198, 536, 543, 645
Vha464I	CTTAAG	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	206
XapI	RAATTY	4 cut(s)	169, 212, 254, 550
XmnI	GAANNNNTTC	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.