Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0009486

Physical Location & Seq

Genomic Coordinates Forward (+)

13669664 .. 13671665

Gene Structure 2002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g10900.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGCTGCAAAAGAAAGCATCATCTGACCTGACCCAAATAAATGCTAAGACATTATCACATACAGAGGCTGTTGAGAAGTTTCTTGAAACTGCGGTTAAGGAAGCCAACGAGGTCATCCAAGATATTCAGCACTCTCTTGATGAGCAGAAACAGCTATTGGCTTTCTCCACTCAACAACAAGAGGAGGGATTGCAAAGAAGCTTGATGTCAGCAGAAGTAATTTCGAAGGCCGCTGGTAACTTTTTTGATGACCTCCATGACCGCGCTTGTCAAGTTATGAGAAATCTTGAAGAAACCCAAATTCAACGAGTCAACCAATTGGTGAATTTTGAGAAGATGTTTAAGGAAGAAGCTTGTAGAGAGGAAAAACATGCTATGGAAAAAATTGCAGTAATTATTGGAACATTGACATCTAAGAAAGCCTTTATGGTATCGGAGGCATCAACCAACATCCAGGAAAAGAGTAAAGAAGACAACACCAGGTTGCAAAGGGAAATCTTTAACATGCAACAAGTGGCAACGGATGCTAGGACGGAATTGAGCGAATATTTCGGAAAGGTGGAATGTGATTTTATGAAAGACACATTCTCAGCAGTTGAATCTCAGGCAATCATGGAAAACTGCCTCCAAGAGTGCTCAGAGAGAGTGGGTTACTCTGGGAAACAGTGGGAAAATGCCCAGTCAGCCATAAATACTCTTAATCAGAACAGTGCTGCAAATATCGAATCCACTGTGAAGGAAAATATCTCTGCGAACCATTCTGCACATGAAAAGTTTGTTTCTGCATCTTCCCGTGTGGATTCAGATTTCAATGCTTTAGCCGCCGACACATTGTCATGCGTTAATGATTCGCTAATGCTGGACTATGTAAAGACAAAGGAAATAGACTCCATGACGGCTGTGTGCGTTGATCAGCTTAAATCAGTACAAGAAAAGCATGGTGATGGCGTATCAACTATACGAAATCAAGCGGAAAAGTGCTTTGTAGAAGATTATTTGGTGGAGAAGCATGCTGGTGCGACCAAGAAACAAGTCATTGCTATCCCCAGCTTGGAATCTATCGAGGAGATGAGAAGCTCCGTCGAAGTCAAAGAAGACGGTTCATCTGATAACAAATTAAAACGGAGCCAAATGGAAAGCAAGATGCCGGGTCCTAGAACTCCTTTCGCGGATGTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

394

Amino Acids

44.07

Weight (kDa)

5.0

Isoelectric Point (pI)

47.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37420 AT2G37420
fragaria_vesca	FvH4_6g14420
malus_domestica	MD04G1119500.v1.1 MD12G1136800.v1.1
prunus_persica	Prupe.6G249200_v2.0.a1
pyrus_communis	pycom04g10890 pycom04g10900 pycom12g13130
rosa_chinensis	RchiOBHm_Chr3g0467551
rosa_laevigata	RLG00000024492
rosa_multiflora	Rmu_sc0000286.1_g000001 Rmu_sc0027582.1_g000001
rosa_roxburghii	Rroxscaffold_6G00413600
rosa_rugosa	Rorug03G0087900 Rorug03G0088000 Rorug03G0088100
rosa_samantha	Rh3AG135900 Rh3BG157700 Rh3CG157600 Rh3DG158500
rosa_wichuraiana	Rw3G012910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	264, 1169
AciI	CCGC	6 cut(s)	92, 231, 262, 822, 971, 1169
AcsI	RAATTY	2 cut(s)	300, 325
AfaI	GTAC	1 cut(s)	927
AfiI	CCNNNNNNNGG	1 cut(s)	1051
AgsI	TTSAA	5 cut(s)	86, 290, 305, 599, 811
AhdI	GACNNNNNGTC	1 cut(s)	832
AjnI	CCWGG	2 cut(s)	453, 479
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AluBI	AGCT	6 cut(s)	154, 201, 353, 916, 1050, 1077
AluI	AGCT	6 cut(s)	154, 201, 353, 916, 1050, 1077
Alw21I	GWGCWC	1 cut(s)	638
AlwNI	CAGNNNCTG	1 cut(s)	68
AoxI	GGCC	1 cut(s)	228
ApeKI	GCWGC	2 cut(s)	4, 713
ApoI	RAATTY	2 cut(s)	300, 325
AspLEI	GCGC	1 cut(s)	266
AspS9I	GGNCC	1 cut(s)	1151
AsuC2I	CCSGG	1 cut(s)	1149
AsuHPI	GGTGA	2 cut(s)	334, 953
AsuII	TTCGAA	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	1151
BbsI	GAAGAC	2 cut(s)	477, 1101
Bbv12I	GWGCWC	1 cut(s)	638
BbvI	GCAGC	1 cut(s)	700
BccI	CCATC	1 cut(s)	938
BceAI	ACGGC	1 cut(s)	912
BciT130I	CCWGG	2 cut(s)	455, 481
BclI	TGATCA	1 cut(s)	910
BcnI	CCSGG	1 cut(s)	1149
BfaI	CTAG	2 cut(s)	528, 1155
BisI	GCNGC	4 cut(s)	5, 231, 714, 822
BlsI	GCNGC	4 cut(s)	6, 232, 715, 823
Bme1390I	CCNGG	3 cut(s)	455, 481, 1149
Bme18I	GGWCC	1 cut(s)	1151
BmeRI	GACNNNNNGTC	1 cut(s)	832
BmgT120I	GGNCC	1 cut(s)	1151
BmiI	GGNNCC	2 cut(s)	1127, 1152
BmrFI	CCNGG	3 cut(s)	455, 481, 1149
BmrI	ACTGGG	1 cut(s)	673
BmsI	GCATC	5 cut(s)	26, 449, 514, 794, 1134
BmuI	ACTGGG	1 cut(s)	673
BpiI	GAAGAC	2 cut(s)	477, 1101
Bpu14I	TTCGAA	1 cut(s)	224
BpuMI	CCSGG	1 cut(s)	1149
Bsc4I	CCNNNNNNNGG	1 cut(s)	1051
Bse1I	ACTGG	1 cut(s)	679
Bse3DI	GCAATG	1 cut(s)	1035
BseBI	CCWGG	2 cut(s)	455, 481
BseGI	GGATG	4 cut(s)	114, 450, 529, 1177
BseLI	CCNNNNNNNGG	1 cut(s)	1051
BseMI	GCAATG	1 cut(s)	1035
BseMII	CTCAG	3 cut(s)	603, 617, 651
BseNI	ACTGG	1 cut(s)	679
BseRI	GAGGAG	2 cut(s)	197, 1079
BseXI	GCAGC	1 cut(s)	700
BseYI	CCCAGC	1 cut(s)	1046
BsgI	GTGCAG	1 cut(s)	747
Bsh1236I	CGCG	2 cut(s)	264, 1169
BshFI	GGCC	1 cut(s)	230
BsiHKAI	GWGCWC	1 cut(s)	638
BsiSI	CCGG	1 cut(s)	1148
BslI	CCNNNNNNNGG	1 cut(s)	1051
BsnI	GGCC	1 cut(s)	230
Bsp119I	TTCGAA	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	638
Bsp143I	GATC	1 cut(s)	910
BspACI	CCGC	6 cut(s)	92, 231, 262, 822, 971, 1169
BspANI	GGCC	1 cut(s)	230
BspCNI	CTCAG	3 cut(s)	602, 616, 650
BspFNI	CGCG	2 cut(s)	264, 1169
BspLI	GGNNCC	2 cut(s)	1127, 1152
BspT104I	TTCGAA	1 cut(s)	224
BsrDI	GCAATG	1 cut(s)	1035
BsrI	ACTGG	1 cut(s)	679
BssMI	GATC	1 cut(s)	910
Bst2UI	CCWGG	2 cut(s)	455, 481
Bst4CI	ACNGT	4 cut(s)	666, 710, 733, 1100
BstAPI	GCANNNNNTGC	1 cut(s)	524
BstBI	TTCGAA	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	1011
BstDEI	CTNAG	5 cut(s)	45, 414, 589, 603, 637
BstF5I	GGATG	4 cut(s)	114, 450, 529, 1177
BstFNI	CGCG	2 cut(s)	264, 1169
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	1 cut(s)	913
BstMBI	GATC	1 cut(s)	910
BstMWI	GCNNNNNNNGC	4 cut(s)	151, 524, 683, 821
BstNI	CCWGG	2 cut(s)	455, 481
BstNSI	RCATGY	3 cut(s)	374, 508, 1013
BstSCI	CCNGG	3 cut(s)	453, 479, 1147
BstUI	CGCG	2 cut(s)	264, 1169
BstV1I	GCAGC	1 cut(s)	700
BstV2I	GAAGAC	2 cut(s)	477, 1101
BsuRI	GGCC	1 cut(s)	230
BtsCI	GGATG	4 cut(s)	114, 450, 529, 1177
BtsIMutI	CAGTG	3 cut(s)	671, 715, 729
Cac8I	GCNNGC	1 cut(s)	1011
CaiI	CAGNNNCTG	1 cut(s)	68
CfoI	GCGC	1 cut(s)	266
Cfr13I	GGNCC	1 cut(s)	1151
CsiI	ACCWGGT	1 cut(s)	479
Csp6I	GTAC	1 cut(s)	926
CviAII	CATG	9 cut(s)	257, 371, 505, 613, 767, 837, 892, 938, 1010
CviQI	GTAC	1 cut(s)	926
DdeI	CTNAG	5 cut(s)	45, 414, 589, 603, 637
DpnI	GATC	1 cut(s)	912
DpnII	GATC	1 cut(s)	910
DriI	GACNNNNNGTC	1 cut(s)	832
Eam1105I	GACNNNNNGTC	1 cut(s)	832
Eco47I	GGWCC	1 cut(s)	1151
EcoO109I	RGGNCCY	1 cut(s)	1151
EcoRII	CCWGG	2 cut(s)	453, 479
FaeI	CATG	9 cut(s)	260, 374, 508, 616, 770, 840, 895, 941, 1013
FalI	AAGNNNNNCTT	2 cut(s)	407, 439
FatI	CATG	9 cut(s)	256, 370, 504, 612, 766, 836, 891, 937, 1009
FbaI	TGATCA	1 cut(s)	910
Fnu4HI	GCNGC	4 cut(s)	5, 231, 714, 822
FokI	GGATG	3 cut(s)	101, 437, 536
Fsp4HI	GCNGC	4 cut(s)	5, 231, 714, 822
FspBI	CTAG	2 cut(s)	528, 1155
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	4 cut(s)	5, 231, 714, 822
GsaI	CCCAGC	1 cut(s)	1050
HaeIII	GGCC	1 cut(s)	230
HapII	CCGG	1 cut(s)	1148
HhaI	GCGC	1 cut(s)	266
Hin1II	CATG	9 cut(s)	260, 374, 508, 616, 770, 840, 895, 941, 1013
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HincII	GTYRAC	2 cut(s)	313, 1177
HindII	GTYRAC	2 cut(s)	313, 1177
HindIII	AAGCTT	2 cut(s)	199, 351
HinfI	GANTC	7 cut(s)	309, 599, 725, 800, 848, 887, 1055
HpaII	CCGG	1 cut(s)	1148
HphI	GGTGA	2 cut(s)	334, 953
Hpy166II	GTNNAC	2 cut(s)	313, 1177
Hpy188I	TCNGA	7 cut(s)	25, 436, 554, 640, 705, 805, 1108
Hpy188III	TCNNGA	3 cut(s)	83, 137, 287
Hpy8I	GTNNAC	2 cut(s)	313, 1177
Hpy99I	CGWCG	1 cut(s)	1085
HpyAV	CCTTC	2 cut(s)	220, 730
HpyCH4III	ACNGT	4 cut(s)	666, 710, 733, 1100
HpyCH4V	TGCA	8 cut(s)	7, 193, 389, 487, 508, 716, 764, 785
HpyF10VI	GCNNNNNNNGC	4 cut(s)	151, 524, 683, 821
HpyF3I	CTNAG	5 cut(s)	45, 414, 589, 603, 637
Hsp92II	CATG	9 cut(s)	260, 374, 508, 616, 770, 840, 895, 941, 1013
HspAI	GCGC	1 cut(s)	264
Ksp22I	TGATCA	1 cut(s)	910
Kzo9I	GATC	1 cut(s)	910
LmnI	GCTCC	2 cut(s)	1082, 1125
Lsp1109I	GCAGC	1 cut(s)	700
LweI	GCATC	5 cut(s)	26, 449, 514, 794, 1134
MabI	ACCWGGT	1 cut(s)	479
MaeI	CTAG	2 cut(s)	528, 1155
MaeIII	GTNAC	2 cut(s)	236, 650
MalI	GATC	1 cut(s)	912
MboI	GATC	1 cut(s)	910
MboII	GAAGA	7 cut(s)	302, 346, 359, 482, 780, 1001, 1106
MfeI	CAATTG	1 cut(s)	317
MhlI	GDGCHC	1 cut(s)	638
MluCI	AATT	8 cut(s)	219, 300, 317, 325, 384, 393, 536, 1115
MlyI	GAGTC	2 cut(s)	318, 881
MnlI	CCTC	9 cut(s)	58, 103, 175, 178, 263, 355, 430, 635, 1057
MseI	TTAA	7 cut(s)	96, 342, 501, 699, 843, 918, 1118
MslI	CAYNNNNRTG	3 cut(s)	835, 942, 1014
MspA1I	CMGCKG	1 cut(s)	233
MspI	CCGG	1 cut(s)	1148
MspR9I	CCNGG	3 cut(s)	455, 481, 1149
MunI	CAATTG	1 cut(s)	317
MvaI	CCWGG	2 cut(s)	455, 481
MvnI	CGCG	2 cut(s)	264, 1169
MwoI	GCNNNNNNNGC	4 cut(s)	151, 524, 683, 821
NciI	CCSGG	1 cut(s)	1149
NdeII	GATC	1 cut(s)	910
NlaIII	CATG	9 cut(s)	260, 374, 508, 616, 770, 840, 895, 941, 1013
NlaIV	GGNNCC	2 cut(s)	1127, 1152
NspI	RCATGY	3 cut(s)	374, 508, 1013
NspV	TTCGAA	1 cut(s)	224
PaeI	GCATGC	1 cut(s)	1013
PfeI	GAWTC	5 cut(s)	599, 725, 800, 848, 1055
PfoI	TCCNGGA	1 cut(s)	453
PkrI	GCNGC	4 cut(s)	6, 232, 715, 823
PleI	GAGTC	2 cut(s)	317, 881
PpsI	GAGTC	2 cut(s)	317, 881
PpuMI	RGGWCCY	1 cut(s)	1151
Psp5II	RGGWCCY	1 cut(s)	1151
Psp6I	CCWGG	2 cut(s)	453, 479
PspFI	CCCAGC	1 cut(s)	1046
PspGI	CCWGG	2 cut(s)	453, 479
PspN4I	GGNNCC	2 cut(s)	1127, 1152
PspPI	GGNCC	1 cut(s)	1151
PspPPI	RGGWCCY	1 cut(s)	1151
PstNI	CAGNNNCTG	1 cut(s)	68
RsaI	GTAC	1 cut(s)	927
RsaNI	GTAC	1 cut(s)	926
RseI	CAYNNNNRTG	3 cut(s)	835, 942, 1014
SaqAI	TTAA	7 cut(s)	96, 342, 501, 699, 843, 918, 1118
SatI	GCNGC	4 cut(s)	5, 231, 714, 822
Sau3AI	GATC	1 cut(s)	910
Sau96I	GGNCC	1 cut(s)	1151
SchI	GAGTC	2 cut(s)	318, 881
ScrFI	CCNGG	3 cut(s)	455, 481, 1149
SduI	GDGCHC	1 cut(s)	638
SexAI	ACCWGGT	1 cut(s)	479
SfaNI	GCATC	5 cut(s)	26, 449, 514, 794, 1134
SfuI	TTCGAA	1 cut(s)	224
SinI	GGWCC	1 cut(s)	1151
SmiMI	CAYNNNNRTG	3 cut(s)	835, 942, 1014
SphI	GCATGC	1 cut(s)	1013
Sse9I	AATT	8 cut(s)	219, 300, 317, 325, 384, 393, 536, 1115
SsiI	CCGC	6 cut(s)	92, 231, 262, 822, 971, 1169
SspI	AATATT	1 cut(s)	548
SspMI	CTAG	2 cut(s)	528, 1155
StyD4I	CCNGG	3 cut(s)	453, 479, 1147
TaaI	ACNGT	4 cut(s)	666, 710, 733, 1100
TaqI	TCGA	4 cut(s)	224, 723, 1062, 1083
TasI	AATT	8 cut(s)	219, 300, 317, 325, 384, 393, 536, 1115
TatI	WGTACW	1 cut(s)	925
TauI	GCSGC	2 cut(s)	233, 824
TfiI	GAWTC	5 cut(s)	599, 725, 800, 848, 1055
Tru1I	TTAA	7 cut(s)	96, 342, 501, 699, 843, 918, 1118
Tru9I	TTAA	7 cut(s)	96, 342, 501, 699, 843, 918, 1118
TscAI	CASTG	3 cut(s)	671, 715, 736
TseI	GCWGC	2 cut(s)	4, 713
TspDTI	ATGAA	3 cut(s)	590, 783, 1092
TspGWI	ACGGA	4 cut(s)	536, 548, 1069, 1138
TspRI	CASTG	3 cut(s)	671, 715, 736
VpaK11BI	GGWCC	1 cut(s)	1151
XapI	RAATTY	2 cut(s)	300, 325
XceI	RCATGY	3 cut(s)	374, 508, 1013
XspI	CTAG	2 cut(s)	528, 1155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.