Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009486

Physical Location & Seq

Genomic Coordinates Reverse (-)

6871287 .. 6874526

Gene Structure 3240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0088000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGTCTGTGCTTGATAAAGAGATATCAAGCAGTGGTAGAGATTGTGGGGACGATGATGGTAATGAGGACGAGGATGAGAATGGTGGTGGTCTCAATGGCAGATGTAGATGCAGAGCCAAGGATGCAAAGAAGCGGAGTAGTGGAATTGGGTTTTCAAGGAATTTGGGAAAGGCCAAACAGGTGGTCCTGTCTCCATTCACAAAAGCCAAGAAGCAATTACCCAGAAGAAACAGGACTGCTGCTGCTGCTGCTTCTTCTTCTTGTTCACCGTTTTCTTCAGGTAAGAGGCTTGGAGTTAGTGGAGGTAATCAAGGCTGTTACTTATGTTTCATGCAACCATCAACTGTGGATTCATCTGCTGAGTCTCCGTCCAGCGATCCGAATAGCCCGAATTTTACTTATGGGAAGTTGAGGAGTTTAATTGAAAAGAATGATTTCTATTCTAGAGAGTGCAATTACCATTTGGATTTTGATCCTAAATCGCCATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

163

Amino Acids

17.57

Weight (kDa)

8.79

Isoelectric Point (pI)

70.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37420 AT2G37420
fragaria_vesca	FvH4_6g14420
malus_domestica	MD04G1119500.v1.1 MD12G1136800.v1.1
prunus_persica	Prupe.6G249200_v2.0.a1
pyrus_communis	pycom04g10890 pycom04g10900 pycom12g13130
rosa_chinensis	RchiOBHm_Chr3g0467551
rosa_laevigata	RLG00000024492
rosa_multiflora	Rmu_sc0000286.1_g000001 Rmu_sc0027582.1_g000001
rosa_roxburghii	Rroxscaffold_6G00413600
rosa_rugosa	Rorug03G0087900 Rorug03G0088000 Rorug03G0088100
rosa_samantha	Rh3AG135900 Rh3BG157700 Rh3CG157600 Rh3DG158500
rosa_wichuraiana	Rw3G012910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	133
AclWI	GGATC	2 cut(s)	371, 467
AcsI	RAATTY	2 cut(s)	160, 391
AcuI	CTGAAG	1 cut(s)	261
AgsI	TTSAA	2 cut(s)	156, 425
Alw26I	GTCTC	3 cut(s)	95, 195, 369
AlwI	GGATC	2 cut(s)	371, 467
AoxI	GGCC	1 cut(s)	171
ApeKI	GCWGC	4 cut(s)	239, 242, 245, 248
ApoI	RAATTY	2 cut(s)	160, 391
ArsI	GACNNNNNNTTYG	2 cut(s)	168, 200
Asp700I	GAANNNNTTC	1 cut(s)	434
AspS9I	GGNCC	1 cut(s)	184
AsuHPI	GGTGA	1 cut(s)	258
AvaII	GGWCC	1 cut(s)	184
BbvI	GCAGC	4 cut(s)	226, 229, 232, 235
BccI	CCATC	2 cut(s)	50, 346
BcoDI	GTCTC	3 cut(s)	95, 195, 369
BfaI	CTAG	2 cut(s)	444, 490
BisI	GCNGC	4 cut(s)	240, 243, 246, 249
BlsI	GCNGC	4 cut(s)	241, 244, 247, 250
Bme18I	GGWCC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	184
BmsI	GCATC	2 cut(s)	98, 112
BsaBI	GATNNNNATC	1 cut(s)	471
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	117
Bse8I	GATNNNNATC	1 cut(s)	471
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	2 cut(s)	79, 127
BseJI	GATNNNNATC	1 cut(s)	471
BseMII	CTCAG	1 cut(s)	351
BseRI	GAGGAG	1 cut(s)	427
BseXI	GCAGC	4 cut(s)	226, 229, 232, 235
BshFI	GGCC	1 cut(s)	173
BslFI	GGGAC	1 cut(s)	62
BsmAI	GTCTC	3 cut(s)	95, 195, 369
BsmFI	GGGAC	1 cut(s)	62
BsnI	GGCC	1 cut(s)	173
Bso31I	GGTCTC	1 cut(s)	95
Bsp143I	GATC	2 cut(s)	376, 472
BspACI	CCGC	1 cut(s)	133
BspANI	GGCC	1 cut(s)	173
BspCNI	CTCAG	1 cut(s)	352
BspPI	GGATC	2 cut(s)	371, 467
BspTNI	GGTCTC	1 cut(s)	95
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	2 cut(s)	376, 472
BssT1I	CCWWGG	1 cut(s)	117
Bst4CI	ACNGT	2 cut(s)	270, 346
BstDEI	CTNAG	1 cut(s)	360
BstF5I	GGATG	2 cut(s)	79, 127
BstKTI	GATC	2 cut(s)	379, 475
BstMAI	GTCTC	3 cut(s)	95, 195, 369
BstMBI	GATC	2 cut(s)	376, 472
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 245, 248
BstV1I	GCAGC	4 cut(s)	226, 229, 232, 235
BstXI	CCANNNNNNTGG	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	173
BtsCI	GGATG	2 cut(s)	79, 127
BtsI	GCAGTG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	184
CviAII	CATG	2 cut(s)	331, 486
CviJI	RGCY	6 cut(s)	116, 173, 206, 289, 315, 387
CviKI_1	RGCY	6 cut(s)	116, 173, 206, 289, 315, 387
DdeI	CTNAG	1 cut(s)	360
DpnI	GATC	2 cut(s)	378, 474
DpnII	GATC	2 cut(s)	376, 472
Eco130I	CCWWGG	1 cut(s)	117
Eco31I	GGTCTC	1 cut(s)	95
Eco32I	GATATC	1 cut(s)	24
Eco47I	GGWCC	1 cut(s)	184
Eco57I	CTGAAG	1 cut(s)	261
EcoRV	GATATC	1 cut(s)	24
EcoT14I	CCWWGG	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	2 cut(s)	334, 489
FaiI	YATR	4 cut(s)	325, 332, 402, 487
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	2 cut(s)	330, 485
Fnu4HI	GCNGC	4 cut(s)	240, 243, 246, 249
FokI	GGATG	2 cut(s)	86, 134
Fsp4HI	GCNGC	4 cut(s)	240, 243, 246, 249
FspBI	CTAG	2 cut(s)	444, 490
GluI	GCNGC	4 cut(s)	240, 243, 246, 249
HaeIII	GGCC	1 cut(s)	173
Hin1II	CATG	2 cut(s)	334, 489
HinfI	GANTC	2 cut(s)	350, 362
HphI	GGTGA	1 cut(s)	258
Hpy166II	GTNNAC	1 cut(s)	266
Hpy188I	TCNGA	1 cut(s)	381
Hpy188III	TCNNGA	1 cut(s)	444
Hpy8I	GTNNAC	1 cut(s)	266
HpyCH4III	ACNGT	2 cut(s)	270, 346
HpyCH4V	TGCA	4 cut(s)	111, 125, 334, 453
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 245, 248
HpyF3I	CTNAG	1 cut(s)	360
Hsp92II	CATG	2 cut(s)	334, 489
Kzo9I	GATC	2 cut(s)	376, 472
LpnPI	CCDG	6 cut(s)	164, 200, 217, 235, 264, 385
Lsp1109I	GCAGC	4 cut(s)	226, 229, 232, 235
LweI	GCATC	2 cut(s)	98, 112
MaeI	CTAG	2 cut(s)	444, 490
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	2 cut(s)	378, 474
MboI	GATC	2 cut(s)	376, 472
MboII	GAAGA	4 cut(s)	237, 246, 249, 267
MluCI	AATT	6 cut(s)	144, 160, 215, 391, 420, 454
MlyI	GAGTC	1 cut(s)	371
MnlI	CCTC	5 cut(s)	58, 64, 279, 296, 405
MroXI	GAANNNNTTC	1 cut(s)	434
MseI	TTAA	1 cut(s)	419
MwoI	GCNNNNNNNGC	3 cut(s)	122, 245, 248
NdeII	GATC	2 cut(s)	376, 472
NlaIII	CATG	2 cut(s)	334, 489
PdmI	GAANNNNTTC	1 cut(s)	434
PfeI	GAWTC	1 cut(s)	350
PkrI	GCNGC	4 cut(s)	241, 244, 247, 250
PleI	GAGTC	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	370
PspPI	GGNCC	1 cut(s)	184
SaqAI	TTAA	1 cut(s)	419
SatI	GCNGC	4 cut(s)	240, 243, 246, 249
Sau3AI	GATC	2 cut(s)	376, 472
Sau96I	GGNCC	1 cut(s)	184
SchI	GAGTC	1 cut(s)	371
SetI	ASST	3 cut(s)	183, 283, 307
SfaNI	GCATC	2 cut(s)	98, 112
SinI	GGWCC	1 cut(s)	184
Sse9I	AATT	6 cut(s)	144, 160, 215, 391, 420, 454
SsiI	CCGC	1 cut(s)	133
SspMI	CTAG	2 cut(s)	444, 490
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	2 cut(s)	270, 346
TasI	AATT	6 cut(s)	144, 160, 215, 391, 420, 454
TfiI	GAWTC	1 cut(s)	350
Tru1I	TTAA	1 cut(s)	419
Tru9I	TTAA	1 cut(s)	419
TscAI	CASTG	1 cut(s)	37
TseI	GCWGC	4 cut(s)	239, 242, 245, 248
TspDTI	ATGAA	2 cut(s)	319, 342
TspGWI	ACGGA	1 cut(s)	357
TspRI	CASTG	1 cut(s)	37
VpaK11BI	GGWCC	1 cut(s)	184
XapI	RAATTY	2 cut(s)	160, 391
XbaI	TCTAGA	1 cut(s)	443
XmnI	GAANNNNTTC	1 cut(s)	434
XspI	CTAG	2 cut(s)	444, 490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.