Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027582.1

Orthogroup ID

OG0009486

Physical Location & Seq

Genomic Coordinates Forward (+)

139 .. 2453

Gene Structure 2315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027582.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1349 bp

atggaggaagaaaatcaaggcttggttttgacatttggttctcagcttgaccggagtttaaaagatctgcataagaccatcttagggtctgtttctcaacagcagaaccaactaagatgcatggaggaacatgttcactcataccttgcgagtaaatgtgatgcaacaaaggtattggaatcaaggattaagaaaatatcagagacatacagttctggagtatcagccttgaaggagcttgccaacgtgctgcaaatgaaagcatcatctgacttggagcagctaaatagtaaaacattatcacagacagtggctgttgagaagtttcttggatctgcggttacggaggccaacgaggtcatccaagatattcagcagtctattgttgagcataaacagctattggctttctccactcagcaacacgagctgggattacaacgaagtttgcattcagcacaagttatttcaaaggctagtgtgaatttttttgatgacctccatgaccgtgcttcagaagttatgaaaattcttgaatctagtcaagtcaaacgattccaccagttagtgaactttgagaagatgtttaaggaagaggctgctagagaggaaaaacaggcttttgataaaattgcagcagtattagaaactttgacgtctaagaaaatttctatggtatcggaggcatcaaccagcatcaagcacacagatacaaaagagcatagcatattgcaaaaagaggtgtttaccatgcaacaagtggcaacagatgctaggaaggagttgagcgaacatttggaaaaggtggagagtcattttatggaagacacattctcagcagctgaatctcacacaatcatggaaaactgcctccaagagtgctcagagagagttggttattctagaaaacagtgggaaaataccgagtcaacgataaatcatatgaataagaacagtgtttcaaagatcgaatccactgtgaaggaaaacatctctgcaaatcgtttggcatatgaagagtttgtgtctgcatcctcccatgtggatgcagattttgatgctataaccactgacacgctggcatgcgttaatgcttcgctgatgcaagatcatgaaaaggcaaaagagatggattccataactaccttatgcttggatcaacttaaatcagtacaagacaatcacagtgaaagtgttgataagcatgctggtactcggaagaaaaaagttatagaagtcccaagcttggcatctattgaggaaatgagaagctcctttgacatcaaagaagagaatgtttctgatgacaaattgaagtggagccaaactgaaagcaagatcccgtgtcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

450

Amino Acids

50.73

Weight (kDa)

5.41

Isoelectric Point (pI)

45.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37420 AT2G37420
fragaria_vesca	FvH4_6g14420
malus_domestica	MD04G1119500.v1.1 MD12G1136800.v1.1
prunus_persica	Prupe.6G249200_v2.0.a1
pyrus_communis	pycom04g10890 pycom04g10900 pycom12g13130
rosa_chinensis	RchiOBHm_Chr3g0467551
rosa_laevigata	RLG00000024492
rosa_multiflora	Rmu_sc0000286.1_g000001 Rmu_sc0027582.1_g000001
rosa_roxburghii	Rroxscaffold_6G00413600
rosa_rugosa	Rorug03G0087900 Rorug03G0088000 Rorug03G0088100
rosa_samantha	Rh3AG135900 Rh3BG157700 Rh3CG157600 Rh3DG158500
rosa_wichuraiana	Rw3G012910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	659
AciI	CCGC	1 cut(s)	338
AclWI	GGATC	3 cut(s)	340, 1164, 1333
AcsI	RAATTY	3 cut(s)	484, 528, 666
AcuI	CTGAAG	1 cut(s)	498
AcyI	GRCGYC	1 cut(s)	656
AfaI	GTAC	2 cut(s)	1173, 1213
AfiI	CCNNNNNNNGG	2 cut(s)	84, 1246
AflIII	ACRYGT	1 cut(s)	130
AgsI	TTSAA	5 cut(s)	232, 471, 536, 963, 1315
AluBI	AGCT	8 cut(s)	46, 238, 283, 400, 430, 842, 1245, 1272
AluI	AGCT	8 cut(s)	46, 238, 283, 400, 430, 842, 1245, 1272
Alw21I	GWGCWC	1 cut(s)	884
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	3 cut(s)	340, 1164, 1333
AlwNI	CAGNNNCTG	2 cut(s)	314, 842
AoxI	GGCC	1 cut(s)	348
ApeKI	GCWGC	5 cut(s)	250, 280, 599, 635, 839
ApoI	RAATTY	3 cut(s)	484, 528, 666
Asp700I	GAANNNNTTC	1 cut(s)	132
BauI	CACGAG	1 cut(s)	425
BbsI	GAAGAC	1 cut(s)	831
Bbv12I	GWGCWC	1 cut(s)	884
BbvI	GCAGC	5 cut(s)	237, 292, 586, 647, 851
BccI	CCATC	2 cut(s)	86, 1123
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	5 cut(s)	477, 540, 603, 774, 903
BglII	AGATCT	1 cut(s)	64
BisI	GCNGC	5 cut(s)	251, 281, 600, 636, 840
BlsI	GCNGC	5 cut(s)	252, 282, 601, 637, 841
BmiI	GGNNCC	1 cut(s)	1322
BpiI	GAAGAC	1 cut(s)	831
BpmI	CTGGAG	1 cut(s)	237
BsaHI	GRCGYC	1 cut(s)	656
BsaWI	WCCGGW	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 1246
Bse1I	ACTGG	1 cut(s)	562
BseGI	GGATG	3 cut(s)	360, 1031, 1051
BseLI	CCNNNNNNNGG	2 cut(s)	84, 1246
BseMII	CTCAG	4 cut(s)	56, 431, 849, 897
BseNI	ACTGG	1 cut(s)	562
BseXI	GCAGC	5 cut(s)	237, 292, 586, 647, 851
BseYI	CCCAGC	1 cut(s)	430
BshFI	GGCC	1 cut(s)	350
BsiHKAI	GWGCWC	1 cut(s)	884
BsiSI	CCGG	1 cut(s)	52
BslFI	GGGAC	1 cut(s)	1223
BslI	CCNNNNNNNGG	2 cut(s)	84, 1246
BsmAI	GTCTC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	1223
BsmI	GAATGC	1 cut(s)	451
BsnI	GGCC	1 cut(s)	350
Bsp1286I	GDGCHC	1 cut(s)	884
Bsp143I	GATC	6 cut(s)	64, 332, 966, 1108, 1156, 1338
BspACI	CCGC	1 cut(s)	338
BspANI	GGCC	1 cut(s)	350
BspCNI	CTCAG	4 cut(s)	55, 430, 848, 896
BspHI	TCATGA	1 cut(s)	1111
BspLI	GGNNCC	1 cut(s)	1322
BspPI	GGATC	3 cut(s)	340, 1164, 1333
BsrI	ACTGG	1 cut(s)	562
BssMI	GATC	6 cut(s)	64, 332, 966, 1108, 1156, 1338
BssNI	GRCGYC	1 cut(s)	656
BssSI	CACGAG	1 cut(s)	425
Bst2BI	CACGAG	1 cut(s)	425
Bst4CI	ACNGT	7 cut(s)	212, 310, 509, 912, 956, 979, 1187
Bst6I	CTCTTC	3 cut(s)	588, 1011, 1284
BstACI	GRCGYC	1 cut(s)	656
BstAPI	GCANNNNNTGC	1 cut(s)	770
BstC8I	GCNNGC	4 cut(s)	240, 1080, 1084, 1206
BstDEI	CTNAG	7 cut(s)	42, 82, 113, 417, 660, 835, 883
BstF5I	GGATG	3 cut(s)	360, 1031, 1051
BstKTI	GATC	6 cut(s)	67, 335, 969, 1111, 1159, 1341
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	6 cut(s)	64, 332, 966, 1108, 1156, 1338
BstMWI	GCNNNNNNNGC	3 cut(s)	397, 427, 770
BstNSI	RCATGY	3 cut(s)	134, 1086, 1208
BstV1I	GCAGC	5 cut(s)	237, 292, 586, 647, 851
BstV2I	GAAGAC	1 cut(s)	831
BstX2I	RGATCY	3 cut(s)	64, 332, 1338
BstYI	RGATCY	3 cut(s)	64, 332, 1338
BsuRI	GGCC	1 cut(s)	350
BtsCI	GGATG	3 cut(s)	360, 1031, 1051
BtsIMutI	CAGTG	6 cut(s)	315, 917, 961, 975, 1068, 1192
Cac8I	GCNNGC	4 cut(s)	240, 1080, 1084, 1206
CaiI	CAGNNNCTG	2 cut(s)	314, 842
CciI	TCATGA	1 cut(s)	1111
Csp6I	GTAC	2 cut(s)	1172, 1212
CviAII	CATG	9 cut(s)	121, 131, 503, 751, 859, 1040, 1083, 1112, 1205
CviQI	GTAC	2 cut(s)	1172, 1212
DdeI	CTNAG	7 cut(s)	42, 82, 113, 417, 660, 835, 883
DpnI	GATC	6 cut(s)	66, 334, 968, 1110, 1158, 1340
DpnII	GATC	6 cut(s)	64, 332, 966, 1108, 1156, 1338
DraI	TTTAAA	1 cut(s)	60
Eam1104I	CTCTTC	3 cut(s)	588, 1011, 1284
EarI	CTCTTC	3 cut(s)	588, 1011, 1284
Eco57I	CTGAAG	1 cut(s)	498
EcoT22I	ATGCAT	1 cut(s)	122
FaeI	CATG	9 cut(s)	124, 134, 506, 754, 862, 1043, 1086, 1115, 1208
FalI	AAGNNNNNCTT	2 cut(s)	65, 97
FaqI	GGGAC	1 cut(s)	1223
FatI	CATG	9 cut(s)	120, 130, 502, 750, 858, 1039, 1082, 1111, 1204
FauNDI	CATATG	2 cut(s)	942, 1012
Fnu4HI	GCNGC	5 cut(s)	251, 281, 600, 636, 840
FokI	GGATG	3 cut(s)	347, 1018, 1058
Fsp4HI	GCNGC	5 cut(s)	251, 281, 600, 636, 840
FspBI	CTAG	5 cut(s)	477, 540, 603, 774, 903
GluI	GCNGC	5 cut(s)	251, 281, 600, 636, 840
GsaI	CCCAGC	1 cut(s)	434
GsuI	CTGGAG	1 cut(s)	237
HaeIII	GGCC	1 cut(s)	350
HapII	CCGG	1 cut(s)	52
Hin1I	GRCGYC	1 cut(s)	656
Hin1II	CATG	9 cut(s)	124, 134, 506, 754, 862, 1043, 1086, 1115, 1208
HincII	GTYRAC	1 cut(s)	930
HindII	GTYRAC	1 cut(s)	930
HindIII	AAGCTT	1 cut(s)	1243
HinfI	GANTC	8 cut(s)	179, 536, 555, 811, 845, 926, 971, 1133
HpaII	CCGG	1 cut(s)	52
Hpy166II	GTNNAC	4 cut(s)	136, 571, 747, 930
Hpy188I	TCNGA	7 cut(s)	202, 271, 517, 682, 886, 1218, 1303
Hpy188III	TCNNGA	4 cut(s)	216, 533, 903, 1112
Hpy8I	GTNNAC	4 cut(s)	136, 571, 747, 930
HpyAV	CCTTC	3 cut(s)	226, 772, 976
HpyCH4III	ACNGT	7 cut(s)	212, 310, 509, 912, 956, 979, 1187
HpyCH4IV	ACGT	2 cut(s)	246, 656
HpyF10VI	GCNNNNNNNGC	3 cut(s)	397, 427, 770
HpyF3I	CTNAG	7 cut(s)	42, 82, 113, 417, 660, 835, 883
HpySE526I	ACGT	2 cut(s)	246, 656
Hsp92I	GRCGYC	1 cut(s)	656
Hsp92II	CATG	9 cut(s)	124, 134, 506, 754, 862, 1043, 1086, 1115, 1208
Kzo9I	GATC	6 cut(s)	64, 332, 966, 1108, 1156, 1338
LmnI	GCTCC	4 cut(s)	235, 277, 1277, 1320
LpnPI	CCDG	8 cut(s)	65, 201, 416, 575, 602, 706, 1064, 1194
Lsp1109I	GCAGC	5 cut(s)	237, 292, 586, 647, 851
MaeI	CTAG	5 cut(s)	477, 540, 603, 774, 903
MaeII	ACGT	2 cut(s)	246, 656
MaeIII	GTNAC	1 cut(s)	340
MalI	GATC	6 cut(s)	66, 334, 968, 1110, 1158, 1340
MboI	GATC	6 cut(s)	64, 332, 966, 1108, 1156, 1338
MboII	GAAGA	7 cut(s)	20, 592, 605, 836, 1028, 1231, 1301
MflI	RGATCY	3 cut(s)	64, 332, 1338
MhlI	GDGCHC	1 cut(s)	884
MluCI	AATT	5 cut(s)	484, 528, 630, 666, 1310
MlyI	GAGTC	2 cut(s)	820, 935
Mph1103I	ATGCAT	1 cut(s)	122
MroXI	GAANNNNTTC	1 cut(s)	132
MseI	TTAA	5 cut(s)	59, 189, 588, 1089, 1164
MslI	CAYNNNNRTG	3 cut(s)	507, 857, 1044
MspA1I	CMGCKG	1 cut(s)	842
MspI	CCGG	1 cut(s)	52
Mva1269I	GAATGC	1 cut(s)	451
MwoI	GCNNNNNNNGC	3 cut(s)	397, 427, 770
NdeI	CATATG	2 cut(s)	942, 1012
NdeII	GATC	6 cut(s)	64, 332, 966, 1108, 1156, 1338
NlaIII	CATG	9 cut(s)	124, 134, 506, 754, 862, 1043, 1086, 1115, 1208
NlaIV	GGNNCC	1 cut(s)	1322
NsiI	ATGCAT	1 cut(s)	122
NspI	RCATGY	3 cut(s)	134, 1086, 1208
PaeI	GCATGC	2 cut(s)	1086, 1208
PagI	TCATGA	1 cut(s)	1111
PciI	ACATGT	1 cut(s)	130
PctI	GAATGC	1 cut(s)	451
PdmI	GAANNNNTTC	1 cut(s)	132
PfeI	GAWTC	6 cut(s)	179, 536, 555, 845, 971, 1133
PkrI	GCNGC	5 cut(s)	252, 282, 601, 637, 841
PleI	GAGTC	2 cut(s)	819, 934
PpsI	GAGTC	2 cut(s)	819, 934
PscI	ACATGT	1 cut(s)	130
PspFI	CCCAGC	1 cut(s)	430
PspN4I	GGNNCC	1 cut(s)	1322
PstNI	CAGNNNCTG	2 cut(s)	314, 842
PsuI	RGATCY	3 cut(s)	64, 332, 1338
PvuII	CAGCTG	1 cut(s)	842
RsaI	GTAC	2 cut(s)	1173, 1213
RsaNI	GTAC	2 cut(s)	1172, 1212
RseI	CAYNNNNRTG	3 cut(s)	507, 857, 1044
SaqAI	TTAA	5 cut(s)	59, 189, 588, 1089, 1164
SatI	GCNGC	5 cut(s)	251, 281, 600, 636, 840
Sau3AI	GATC	6 cut(s)	64, 332, 966, 1108, 1156, 1338
SchI	GAGTC	2 cut(s)	820, 935
SduI	GDGCHC	1 cut(s)	884
SmiMI	CAYNNNNRTG	3 cut(s)	507, 857, 1044
SphI	GCATGC	2 cut(s)	1086, 1208
Sse9I	AATT	5 cut(s)	484, 528, 630, 666, 1310
SsiI	CCGC	1 cut(s)	338
SspMI	CTAG	5 cut(s)	477, 540, 603, 774, 903
TaaI	ACNGT	7 cut(s)	212, 310, 509, 912, 956, 979, 1187
TaiI	ACGT	2 cut(s)	249, 659
TaqI	TCGA	1 cut(s)	969
TasI	AATT	5 cut(s)	484, 528, 630, 666, 1310
TatI	WGTACW	1 cut(s)	1171
TfiI	GAWTC	6 cut(s)	179, 536, 555, 845, 971, 1133
Tru1I	TTAA	5 cut(s)	59, 189, 588, 1089, 1164
Tru9I	TTAA	5 cut(s)	59, 189, 588, 1089, 1164
TscAI	CASTG	6 cut(s)	315, 917, 961, 982, 1075, 1192
TseI	GCWGC	5 cut(s)	250, 280, 599, 635, 839
TspDTI	ATGAA	5 cut(s)	272, 539, 959, 1029, 1128
TspGWI	ACGGA	1 cut(s)	359
TspRI	CASTG	6 cut(s)	315, 917, 961, 982, 1075, 1192
XapI	RAATTY	3 cut(s)	484, 528, 666
XbaI	TCTAGA	1 cut(s)	902
XceI	RCATGY	3 cut(s)	134, 1086, 1208
XcmI	CCANNNNNNNNNTGG	2 cut(s)	757, 1075
XmnI	GAANNNNTTC	1 cut(s)	132
XspI	CTAG	5 cut(s)	477, 540, 603, 774, 903
ZraI	GACGTC	1 cut(s)	657
Zsp2I	ATGCAT	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.