Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002171

Physical Location & Seq

Genomic Coordinates Reverse (-)

6863775 .. 6870120

Gene Structure 6346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0087900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3381 bp

ATGTCGTCTTCAAGACCCAGTCACTCATCCAGCAATTCAGGGAGATCAAGGCACACTGCTAGAGTTATTGCTCAGACAACTGTAGATGCAAAGCTTCATGCAGATTTTGAGGAGTCGGGCAGTTCCTTTGACTACTCGAGCTCAGTGCGTGTTAGCAGTTCAGTTGCTGGGGATCAACAACCTAGGTCTGACAAAGTGACCACTGCTTATCTCCATCACATACAGAAAGGGAAGTTGATCCAGCCATTTGGCTGCTTGCTAGCCTTAGATGACAAAACTTTCAGGGTCATTGCACACAGTGAGAATGCCCCTGAAATGCTGACTATGGTTAGTCATGCCGTCCCAAGTGTTGGGGACCACCCAGTTCTTGGCATAGGAACAGATGTGAGAACAATTTTCACAGGCCCTAGTGCCTCTGCATTGCATAAGGCCCTCGGGTTCGGGGAGGTTTCTCTCTTAAATCCCATCTTAGTCCATTGCAAGTCGTCTGGAAAGCCTTTCTATGCTATAGTCCACCGGGTAACAGGTAGCTTGGTCATTGATTTTGAACCGGTGAAGCCTTATGAAGTCCCCATGACTGCTGCTGGAGCTCTGCAATCATACAAACTTGCAGCCAAAGCAATTGCACGATTGCAGTCTTTGCCTAGTGGGAGCCTGGAGAGGCTTTGTGATACAATGGTTCAAGAGGTTTTTGAGCTCACTGGTTATGACAGGGTGATGGCCTATAAATTTCATGATGATGATCATGGGGAAGTTATTGCAGAGCTTACGAAGCCTGGCCTGGAGCCATATCTGGGTTTGCATTATCCATCCACTGATATACCTCAAGCTTCACGGTTCCTGTTTATGAAGAATAAGGTCCGTATGATTGTTGACTGTCGTGCTAAAAATGTCAAGGTCCTTCAAGATGAGAAGCTTCCTTTGGATCTAACACTGTGTGGTTCAACCCTCAGAGCCCCACATAGTTGCCATTTGCAATATATGGAGAACATGAATTCCATTGCTTCTCTTGTTATGGCAGTAGTGGTCAATGAAGGGGAAGCGGATGATGAGGTTGCCGGTCCTGATGCTGCACAGACTCAAAAGAGAAAGAGACTGTGGGGTTTAGTAGTATGTCATAACACAACTCCAAGGTTTGTCCCTTTCCCTCTCAGATATGCCTGTGAGTTTCTAGCTCAAGTGTTTGCCATCCATGTGAATAAGGAATTAGAGTTGGAGGATCAGATTATTGAAAAGAACATCCTGCGTACCCAAACGCTGTTGTGTGATATGCTTTTGCGCGATGCTCCTTTGGGTATAGTGTCACAAACCCCTAATATTATGGATCTAGTGAAATGTGATGGGGCTGCCCTGCTATACAAGAACAAGATATGGAGACTTGGATTAACTCCAAGTGACTTCCAGATTCAGGACATATCCTTGTGGCTCACTAAGTGCCATATGGATTCCACAGGTTTGAGTACAGATAGCTTGTATGACGCGGGTTTCCCTGGGGCTCTCGCTCTTGGTGATGTAGTGTGTGGAATGGCAGCTGTGAAGATAACTTCCAAGGACACAATTTTTTGGTTCCGATCCCACACTGCTGCAGAAATCCGATGGGGTGGTGCAAAACATGACCCGGATGAGAAGGACGATGGCTGGAAAATGCACCCCAGATCATCATTCAAGGCTTTCCTTGAAGTTGTGAAGACAAGGAGCTTACCTTGGAAGGACTATGAAATGGATGCAATTCATTCTTTGCAGCTTATTCTGAGGAATGCATTCAAGGATGTGGGAACCATGGATGTAAACAACAGTGGAATCCAGATGAGGCTTAGTGACCTGAAAGTTGATGGGATGCAAGAACTGGAAGCAGTGACAGGTGAGATGGTCCGGTTGATTGAAACAGCAACAGTGCCAATTTTGGCAGTTGATGTTGATGGGTCAGTTAATGGGTGGAACACAAAAATTTCCGAGTTAACTGGTCTTCCTGTTGATGAAGCAATTGGAAAGAATTTACTCACACTTGTGGAAGAATCTTCAACTAGCATGGTGGAAAGGATGCTGGAGTTGGCATTGCAAGGCAAAGAGGAACAAAACATCCAATTCGAGATAAAAACACACGGTGCTAGGACTGACTTTGGTCCCATCAGGTTAGTTGTGAATGCTTGTGCAAGCAGAGATATTCATGAAAATGTTGTGGGAGTGTGTTTTGTGGCCCAAGATATCACTGGTCAGAAGACTGTGATGGACAAGTTCACTCGCATTGAAGGTGATTATAAAGCAATTGTACAAAACCCAAGTCCATTGATCCCCCCAATATTTGGCACTGATGAATTTGGCTGGTGTTCTGAGTGGAATCCAGCAATGACTAAGTTAACTGGGTGGAAACGAGAGGAGGTAATGGATAAAATGCTGTTGGGGGAGGTTTTTGGGATCAACATGGTTTGTTGTCCTCTCAAGAATCAAGAAGCTTTTGTAAATCTTGGTGTTGTAATCAATCACGCCATGACTGGTCAGGTGTCTGAAAAGATTCCTTTTGGTTTCTGGAATCGAGGTGGAAAGTACACTGAATGTTTGTTGTGTGTAAGTAAGAAATTGGACAGTGAGGGTGCAGTCACTGGGGTCTTTTGCTTCTTGCAGCTTGCTAGCCCAGAATTGCAACAAGCACTTCATGTCCAACGCTTATCTGAACAAACCGCTATGAAGAGATTAAAAGCATTAGCTTATATTAAAAGGCAGATCAGGAATCCTTTATCTGGAATACTATTTTCTCGGAAAATGATCGAGGGTACTGAGTTGGGAGCAGAACAAAAAAAGCTCGTGCATACCAGTGCCCAGTGCCAGCAGCAGCTCAGCAAAATACTTGACGACTCTGATCTTGATAGCATCATTGATGGCTACTTGGACCTGGAAATGGTTGAGTTCACTTTGCATGAAGTATTGGTTGCCTCTATTAGTCAAGTCATGATTAAGAGCAATGCCAAGAGTATCCCGATTGTCCAAGATGCAAATGAAGAGATCATGACTGAGACATTGTATGGCGATAGTCTTAGGCTTCAACAAGTCTTGGCTGATTTCTTGTCAGTGTCGGTTAATTATATGCCAACCGGAGGCCAGCTTACTGTAGCAGTTAATTTGACAAAAGATCAGCTGGGACAATCTGTTCATCTCGTACATTTGGAACTCAGGATATCACATGGGGGTAGTGGGATTCCAGAAGGATTACTGAACCAGATGTTTGGAACAGATGGAAACGTATCTGAAGAAGGCATTAGCCTACTCATAAGCAGAAAACTAGTGAAGCTCATGAATGGAGATGTACAGTACCTCCGGGAAGCAGGAAAGTCAACCTTCATTATATCTGCTGAACTTGCTGCTGCACATAAGATGAGGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

1126

Amino Acids

124.28

Weight (kDa)

5.83

Isoelectric Point (pI)

42.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAS_2	PF08446	69 - 185	6.2e-35	PAS fold
GAF	PF01590	219 - 402	6e-16	GAF domain
PHY	PF00360	416 - 589	9.5e-55	Phytochrome region
PAS	PF00989	622 - 736	1.2e-23	PAS fold
PAS_4	PF08448	630 - 740	5.3e-07	PAS fold
PAS	PF00989	752 - 874	1.5e-20	PAS fold
HisKA	PF00512	897 - 956	5.7e-09	His Kinase A (phospho-acceptor) domain
HATPase_c	PF02518	1008 - 1115	6.7e-13	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37430 AT3G53600
fragaria_vesca	FvH4_6g14410 FvH4_6g14411
malus_domestica	MD04G1119600.v1.1 MD12G1136900.v1.1
prunus_persica	Prupe.6G249300_v2.0.a1
pyrus_communis	pycom04g10910 pycom12g13140
rosa_chinensis	RchiOBHm_Chr3g0467501 RchiOBHm_Chr3g0467521 RchiOBHm_Chr3g0467531 RchiOBHm_Chr3g0467541
rosa_laevigata	RLG00000024493 RLG00000024494 RLG00000024497 RLG00000024498 RLG00000024500 RLG00000024501
rosa_multiflora	Rmu_co8150280.1_g000001 Rmu_sc0000286.1_g000002 Rmu_sc0000286.1_g000003 Rmu_sc0000286.1_g000005 Rmu_sc0006408.1_g000010
rosa_roxburghii	Rroxscaffold_6G00413620 Rroxscaffold_6G00413630 Rroxscaffold_6G00413640
rosa_rugosa	Rorug03G0087700 Rorug03G0087800 Rorug03G0087900 Rorug03G0087900
rosa_samantha	Rh3AG135700 Rh3AG135800 Rh3BG157300 Rh3BG157400 Rh3BG157500 Rh3BG157600 Rh3CG157400 Rh3CG157500 Rh3DG158300 Rh3DG158400
rosa_wichuraiana	Rw3G012890 Rw3G012900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2259
AccB7I	CCANNNNNTGG	3 cut(s)	350, 368, 2303
AccII	CGCG	2 cut(s)	1281, 1481
AciI	CCGC	3 cut(s)	1043, 1481, 2679
AclWI	GGATC	8 cut(s)	180, 232, 933, 1227, 1332, 1566, 2284, 2423
AcsI	RAATTY	5 cut(s)	728, 994, 1947, 1993, 2315
AcuI	CTGAAG	1 cut(s)	3264
AdeI	CACNNNGTG	4 cut(s)	299, 938, 1434, 2105
AfaI	GTAC	8 cut(s)	1249, 1462, 2271, 2546, 2773, 3156, 3303, 3308
AfiI	CCNNNNNNNGG	8 cut(s)	350, 368, 794, 1408, 2303, 2738, 2896, 3092
AgeI	ACCGGT	1 cut(s)	550
AhlI	ACTAGT	1 cut(s)	3277
AjnI	CCWGG	5 cut(s)	654, 775, 780, 1489, 2889
AjuI	GAANNNNNNNTTGG	2 cut(s)	905, 937
AleI	CACNNNNGTG	1 cut(s)	2006
AloI	GAACNNNNNNTCC	6 cut(s)	980, 1012, 2064, 2096, 3129, 3161
Alw21I	GWGCWC	3 cut(s)	143, 592, 699
Alw26I	GTCTC	3 cut(s)	1087, 1369, 3005
AlwI	GGATC	8 cut(s)	180, 232, 933, 1227, 1332, 1566, 2284, 2423
AlwNI	CAGNNNCTG	2 cut(s)	167, 2600
Ama87I	CYCGRG	2 cut(s)	136, 434
AoxI	GGCC	6 cut(s)	403, 429, 720, 778, 2196, 3094
ApoI	RAATTY	5 cut(s)	728, 994, 1947, 1993, 2315
ArsI	GACNNNNNNTTYG	2 cut(s)	2266, 2298
AsiGI	ACCGGT	1 cut(s)	550
Asp700I	GAANNNNTTC	2 cut(s)	1760, 2511
AspA2I	CCTAGG	1 cut(s)	182
AspLEI	GCGC	1 cut(s)	1281
AsuC2I	CCSGG	3 cut(s)	518, 1619, 3314
AsuHPI	GGTGA	5 cut(s)	565, 727, 1520, 1874, 2264
AsuNHI	GCTAGC	2 cut(s)	259, 2627
AvaI	CYCGRG	2 cut(s)	136, 434
AvaII	GGWCC	8 cut(s)	355, 859, 898, 1061, 1870, 2123, 2887, 3375
AvrII	CCTAGG	1 cut(s)	182
BaeGI	GKGCMC	1 cut(s)	2818
BaeI	ACNNNNGTAYC	2 cut(s)	663, 696
BanII	GRGCYC	5 cut(s)	143, 592, 699, 958, 1498
BauI	CACGAG	1 cut(s)	2801
BbsI	GAAGAC	3 cut(s)	1694, 1958, 2225
Bbv12I	GWGCWC	3 cut(s)	143, 592, 699
BceAI	ACGGC	1 cut(s)	323
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BciT130I	CCWGG	5 cut(s)	656, 777, 782, 1491, 2891
BciVI	GTATCC	1 cut(s)	2981
BclI	TGATCA	1 cut(s)	742
BcnI	CCSGG	3 cut(s)	518, 1619, 3314
BcoDI	GTCTC	3 cut(s)	1087, 1369, 3005
BcuI	ACTAGT	1 cut(s)	3277
BfmI	CTRYAG	4 cut(s)	81, 507, 1584, 3105
BfuI	GTATCC	1 cut(s)	2981
BlnI	CCTAGG	1 cut(s)	182
BlpI	GCTNAGC	1 cut(s)	2834
Bme1390I	CCNGG	8 cut(s)	518, 656, 777, 782, 1491, 1619, 2891, 3314
Bme18I	GGWCC	8 cut(s)	355, 859, 898, 1061, 1870, 2123, 2887, 3375
BmeT110I	CYCGRG	2 cut(s)	136, 434
BmiI	GGNNCC	7 cut(s)	356, 653, 786, 839, 1568, 1777, 2125
BmrFI	CCNGG	8 cut(s)	518, 656, 777, 782, 1491, 1619, 2891, 3314
BmrI	ACTGGG	5 cut(s)	12, 356, 2370, 2610, 2812
BmsI	GCATC	8 cut(s)	76, 1057, 1273, 1714, 1827, 2031, 2877, 2977
BmtI	GCTAGC	2 cut(s)	263, 2631
BmuI	ACTGGG	5 cut(s)	12, 356, 2370, 2610, 2812
BoxI	GACNNNNGTC	1 cut(s)	2121
BpiI	GAAGAC	3 cut(s)	1694, 1958, 2225
BpmI	CTGGAG	4 cut(s)	606, 677, 803, 2066
Bpu1102I	GCTNAGC	1 cut(s)	2834
BpuEI	CTTGAG	3 cut(s)	810, 1161, 2423
BpuMI	CCSGG	3 cut(s)	518, 1619, 3314
BsaBI	GATNNNNATC	1 cut(s)	741
BsaJI	CCNNGG	8 cut(s)	182, 433, 1130, 1489, 1490, 1548, 1703, 1779
BsaWI	WCCGGW	3 cut(s)	550, 1872, 3089
BsaXI	ACNNNNNCTCC	2 cut(s)	3294, 3324
Bsc4I	CCNNNNNNNGG	8 cut(s)	350, 368, 794, 1408, 2303, 2738, 2896, 3092
Bse118I	RCCGGY	2 cut(s)	550, 1058
Bse3DI	GCAATG	7 cut(s)	288, 419, 475, 999, 2054, 2352, 2965
Bse8I	GATNNNNATC	1 cut(s)	741
BseBI	CCWGG	5 cut(s)	656, 777, 782, 1491, 2891
BseDI	CCNNGG	8 cut(s)	182, 433, 1130, 1489, 1490, 1548, 1703, 1779
BseJI	GATNNNNATC	1 cut(s)	741
BseLI	CCNNNNNNNGG	8 cut(s)	350, 368, 794, 1408, 2303, 2738, 2896, 3092
BseMI	GCAATG	7 cut(s)	288, 419, 475, 999, 2054, 2352, 2965
BseRI	GAGGAG	2 cut(s)	125, 2390
BseSI	GKGCMC	1 cut(s)	2818
BseYI	CCCAGC	2 cut(s)	167, 3133
BsgI	GTGCAG	3 cut(s)	1056, 2613, 3345
Bsh1236I	CGCG	2 cut(s)	1281, 1481
BshFI	GGCC	6 cut(s)	405, 431, 722, 780, 2198, 3096
BshTI	ACCGGT	1 cut(s)	550
BsiHKAI	GWGCWC	3 cut(s)	143, 592, 699
BsiHKCI	CYCGRG	2 cut(s)	136, 434
BsiSI	CCGG	7 cut(s)	517, 551, 1059, 1619, 1873, 3090, 3313
BslFI	GGGAC	6 cut(s)	326, 368, 554, 1124, 2109, 3150
BslI	CCNNNNNNNGG	8 cut(s)	350, 368, 794, 1408, 2303, 2738, 2896, 3092
BsmAI	GTCTC	3 cut(s)	1087, 1369, 3005
BsmFI	GGGAC	6 cut(s)	326, 368, 554, 1124, 2109, 3150
BsmI	GAATGC	4 cut(s)	310, 1760, 1762, 2149
BsnI	GGCC	6 cut(s)	405, 431, 722, 780, 2198, 3096
BsoBI	CYCGRG	2 cut(s)	136, 434
Bsp1286I	GDGCHC	6 cut(s)	143, 592, 699, 958, 1498, 2818
Bsp1407I	TGTACA	2 cut(s)	2269, 3301
Bsp1720I	GCTNAGC	1 cut(s)	2834
Bsp19I	CCATGG	1 cut(s)	1779
BspACI	CCGC	3 cut(s)	1043, 1481, 2679
BspANI	GGCC	6 cut(s)	405, 431, 722, 780, 2198, 3096
BspFNI	CGCG	2 cut(s)	1281, 1481
BspHI	TCATGA	5 cut(s)	733, 2167, 2946, 3003, 3288
BspLI	GGNNCC	7 cut(s)	356, 653, 786, 839, 1568, 1777, 2125
BspMAI	CTGCAG	1 cut(s)	1588
BspOI	GCTAGC	2 cut(s)	263, 2631
BspPI	GGATC	8 cut(s)	180, 232, 933, 1227, 1332, 1566, 2284, 2423
BsrDI	GCAATG	7 cut(s)	288, 419, 475, 999, 2054, 2352, 2965
BsrFI	RCCGGY	2 cut(s)	550, 1058
BsrGI	TGTACA	2 cut(s)	2269, 3301
BssAI	RCCGGY	2 cut(s)	550, 1058
BssECI	CCNNGG	8 cut(s)	182, 433, 1130, 1489, 1490, 1548, 1703, 1779
BssSI	CACGAG	1 cut(s)	2801
BssT1I	CCWWGG	5 cut(s)	182, 1130, 1548, 1703, 1779
Bst2BI	CACGAG	1 cut(s)	2801
Bst2UI	CCWGG	5 cut(s)	656, 777, 782, 1491, 2891
Bst6I	CTCTTC	2 cut(s)	2681, 2991
BstAPI	GCANNNNNTGC	1 cut(s)	640
BstAUI	TGTACA	2 cut(s)	2269, 3301
BstC8I	GCNNGC	7 cut(s)	257, 261, 2155, 2625, 2629, 2825, 3098
BstDSI	CCRYGG	1 cut(s)	1779
BstFNI	CGCG	2 cut(s)	1281, 1481
BstHHI	GCGC	1 cut(s)	1281
BstMAI	GTCTC	3 cut(s)	1087, 1369, 3005
BstMWI	GCNNNNNNNGC	5 cut(s)	587, 617, 640, 772, 3353
BstNI	CCWGG	5 cut(s)	656, 777, 782, 1491, 2891
BstPAI	GACNNNNGTC	1 cut(s)	2121
BstSCI	CCNGG	8 cut(s)	516, 654, 775, 780, 1489, 1617, 2889, 3312
BstSFI	CTRYAG	4 cut(s)	81, 507, 1584, 3105
BstSLI	GKGCMC	1 cut(s)	2818
BstUI	CGCG	2 cut(s)	1281, 1481
BstV2I	GAAGAC	3 cut(s)	1694, 1958, 2225
BstX2I	RGATCY	2 cut(s)	925, 1324
BstXI	CCANNNNNNTGG	2 cut(s)	248, 3221
BstYI	RGATCY	2 cut(s)	925, 1324
BsuI	GTATCC	1 cut(s)	2981
BsuRI	GGCC	6 cut(s)	405, 431, 722, 780, 2198, 3096
BtgI	CCRYGG	1 cut(s)	1779
BtgZI	GCGATG	1 cut(s)	1296
BtsI	GCAGTG	4 cut(s)	54, 201, 1578, 1860
Cac8I	GCNNGC	7 cut(s)	257, 261, 2155, 2625, 2629, 2825, 3098
CaiI	CAGNNNCTG	2 cut(s)	167, 2600
CciI	TCATGA	5 cut(s)	733, 2167, 2946, 3003, 3288
CfoI	GCGC	1 cut(s)	1281
Cfr10I	RCCGGY	2 cut(s)	550, 1058
CseI	GACGC	1 cut(s)	1487
Csp6I	GTAC	8 cut(s)	1248, 1461, 2270, 2545, 2772, 3155, 3302, 3307
CspAI	ACCGGT	1 cut(s)	550
CviQI	GTAC	8 cut(s)	1248, 1461, 2270, 2545, 2772, 3155, 3302, 3307
DraIII	CACNNNGTG	4 cut(s)	299, 938, 1434, 2105
Eam1104I	CTCTTC	2 cut(s)	2681, 2991
EarI	CTCTTC	2 cut(s)	2681, 2991
Ecl136II	GAGCTC	3 cut(s)	141, 590, 697
Eco130I	CCWWGG	5 cut(s)	182, 1130, 1548, 1703, 1779
Eco24I	GRGCYC	5 cut(s)	143, 592, 699, 958, 1498
Eco32I	GATATC	2 cut(s)	2206, 3174
Eco47I	GGWCC	8 cut(s)	355, 859, 898, 1061, 1870, 2123, 2887, 3375
Eco53kI	GAGCTC	3 cut(s)	141, 590, 697
Eco57I	CTGAAG	1 cut(s)	3264
Eco88I	CYCGRG	2 cut(s)	136, 434
EcoICRI	GAGCTC	3 cut(s)	141, 590, 697
EcoO109I	RGGNCCY	4 cut(s)	404, 430, 898, 3375
EcoRI	GAATTC	1 cut(s)	994
EcoRII	CCWGG	5 cut(s)	654, 775, 780, 1489, 2889
EcoRV	GATATC	2 cut(s)	2206, 3174
EcoT14I	CCWWGG	5 cut(s)	182, 1130, 1548, 1703, 1779
EcoT22I	ATGCAT	1 cut(s)	1762
EcoT38I	GRGCYC	5 cut(s)	143, 592, 699, 958, 1498
ErhI	CCWWGG	5 cut(s)	182, 1130, 1548, 1703, 1779
FalI	AAGNNNNNCTT	2 cut(s)	3317, 3349
FaqI	GGGAC	6 cut(s)	326, 368, 554, 1124, 2109, 3150
FauI	CCCGC	1 cut(s)	1474
FauNDI	CATATG	1 cut(s)	1440
FbaI	TGATCA	1 cut(s)	742
FriOI	GRGCYC	5 cut(s)	143, 592, 699, 958, 1498
GlaI	GCGC	1 cut(s)	1280
GsaI	CCCAGC	2 cut(s)	171, 3137
GsuI	CTGGAG	4 cut(s)	606, 677, 803, 2066
HaeIII	GGCC	6 cut(s)	405, 431, 722, 780, 2198, 3096
HapII	CCGG	7 cut(s)	517, 551, 1059, 1619, 1873, 3090, 3313
HgaI	GACGC	1 cut(s)	1487
HhaI	GCGC	1 cut(s)	1281
Hin6I	GCGC	1 cut(s)	1279
HinP1I	GCGC	1 cut(s)	1279
HincII	GTYRAC	4 cut(s)	874, 1959, 2358, 3330
HindII	GTYRAC	4 cut(s)	874, 1959, 2358, 3330
HindIII	AAGCTT	4 cut(s)	92, 828, 914, 2451
HpaI	GTTAAC	2 cut(s)	1959, 2358
HpaII	CCGG	7 cut(s)	517, 551, 1059, 1619, 1873, 3090, 3313
HphI	GGTGA	5 cut(s)	565, 727, 1520, 1874, 2264
Hpy166II	GTNNAC	9 cut(s)	514, 874, 1789, 1959, 2238, 2358, 2547, 2907, 3330
Hpy8I	GTNNAC	9 cut(s)	514, 874, 1789, 1959, 2238, 2358, 2547, 2907, 3330
HpyAV	CCTTC	8 cut(s)	911, 1028, 1621, 1702, 2243, 3194, 3242, 3343
HpyCH4IV	ACGT	1 cut(s)	3237
HpyF10VI	GCNNNNNNNGC	5 cut(s)	587, 617, 640, 772, 3353
HpySE526I	ACGT	1 cut(s)	3237
HspAI	GCGC	1 cut(s)	1279
Ksp22I	TGATCA	1 cut(s)	742
KspAI	GTTAAC	2 cut(s)	1959, 2358
LmnI	GCTCC	6 cut(s)	587, 651, 784, 1291, 1695, 2783
LweI	GCATC	8 cut(s)	76, 1057, 1273, 1714, 1827, 2031, 2877, 2977
MaeII	ACGT	1 cut(s)	3237
MaeIII	GTNAC	8 cut(s)	20, 196, 520, 1302, 1394, 1817, 1855, 2596
MfeI	CAATTG	3 cut(s)	621, 1983, 2265
MflI	RGATCY	2 cut(s)	925, 1324
MhlI	GDGCHC	6 cut(s)	143, 592, 699, 958, 1498, 2818
MlyI	GAGTC	3 cut(s)	122, 1072, 2846
MmeI	TCCRAC	2 cut(s)	1194, 2683
Mph1103I	ATGCAT	1 cut(s)	1762
MroXI	GAANNNNTTC	2 cut(s)	1760, 2511
MslI	CAYNNNNRTG	5 cut(s)	738, 1193, 2006, 2172, 2811
MspA1I	CMGCKG	2 cut(s)	1532, 3133
MspI	CCGG	7 cut(s)	517, 551, 1059, 1619, 1873, 3090, 3313
MspR9I	CCNGG	8 cut(s)	518, 656, 777, 782, 1491, 1619, 2891, 3314
MunI	CAATTG	3 cut(s)	621, 1983, 2265
Mva1269I	GAATGC	4 cut(s)	310, 1760, 1762, 2149
MvaI	CCWGG	5 cut(s)	656, 777, 782, 1491, 2891
MvnI	CGCG	2 cut(s)	1281, 1481
MwoI	GCNNNNNNNGC	5 cut(s)	587, 617, 640, 772, 3353
NciI	CCSGG	3 cut(s)	518, 1619, 3314
NcoI	CCATGG	1 cut(s)	1779
NdeI	CATATG	1 cut(s)	1440
NheI	GCTAGC	2 cut(s)	259, 2627
NlaIV	GGNNCC	7 cut(s)	356, 653, 786, 839, 1568, 1777, 2125
NmuCI	GTSAC	7 cut(s)	20, 196, 1302, 1394, 1817, 1855, 2596
NsiI	ATGCAT	1 cut(s)	1762
OliI	CACNNNNGTG	1 cut(s)	2006
PaeR7I	CTCGAG	1 cut(s)	136
PagI	TCATGA	5 cut(s)	733, 2167, 2946, 3003, 3288
PasI	CCCWGGG	1 cut(s)	1490
PctI	GAATGC	4 cut(s)	310, 1760, 1762, 2149
PdmI	GAANNNNTTC	2 cut(s)	1760, 2511
PflFI	GACNNNGTC	1 cut(s)	18
PflMI	CCANNNNNTGG	3 cut(s)	350, 368, 2303
PfoI	TCCNGGA	1 cut(s)	3312
PinAI	ACCGGT	1 cut(s)	550
PleI	GAGTC	3 cut(s)	121, 1072, 2846
PpsI	GAGTC	3 cut(s)	121, 1072, 2846
PpuMI	RGGWCCY	2 cut(s)	898, 3375
PshAI	GACNNNNGTC	1 cut(s)	2121
PsiI	TTATAA	1 cut(s)	2259
Psp124BI	GAGCTC	3 cut(s)	143, 592, 699
Psp5II	RGGWCCY	2 cut(s)	898, 3375
Psp6I	CCWGG	5 cut(s)	654, 775, 780, 1489, 2889
PspFI	CCCAGC	2 cut(s)	167, 3133
PspGI	CCWGG	5 cut(s)	654, 775, 780, 1489, 2889
PspN4I	GGNNCC	7 cut(s)	356, 653, 786, 839, 1568, 1777, 2125
PspPPI	RGGWCCY	2 cut(s)	898, 3375
PspXI	VCTCGAGB	1 cut(s)	136
PstI	CTGCAG	1 cut(s)	1588
PstNI	CAGNNNCTG	2 cut(s)	167, 2600
PsuI	RGATCY	2 cut(s)	925, 1324
PsyI	GACNNNGTC	1 cut(s)	18
PvuII	CAGCTG	2 cut(s)	1532, 3133
RsaI	GTAC	8 cut(s)	1249, 1462, 2271, 2546, 2773, 3156, 3303, 3308
RsaNI	GTAC	8 cut(s)	1248, 1461, 2270, 2545, 2772, 3155, 3302, 3307
RseI	CAYNNNNRTG	5 cut(s)	738, 1193, 2006, 2172, 2811
SacI	GAGCTC	3 cut(s)	143, 592, 699
SchI	GAGTC	3 cut(s)	122, 1072, 2846
ScrFI	CCNGG	8 cut(s)	518, 656, 777, 782, 1491, 1619, 2891, 3314
SduI	GDGCHC	6 cut(s)	143, 592, 699, 958, 1498, 2818
SfaNI	GCATC	8 cut(s)	76, 1057, 1273, 1714, 1827, 2031, 2877, 2977
SfcI	CTRYAG	4 cut(s)	81, 507, 1584, 3105
Sfr274I	CTCGAG	1 cut(s)	136
SinI	GGWCC	8 cut(s)	355, 859, 898, 1061, 1870, 2123, 2887, 3375
SlaI	CTCGAG	1 cut(s)	136
SmiMI	CAYNNNNRTG	5 cut(s)	738, 1193, 2006, 2172, 2811
SmlI	CTYRAG	4 cut(s)	136, 825, 1176, 2438
SmoI	CTYRAG	4 cut(s)	136, 825, 1176, 2438
SpeI	ACTAGT	1 cut(s)	3277
SsiI	CCGC	3 cut(s)	1043, 1481, 2679
SspI	AATATT	2 cut(s)	1318, 2301
SstI	GAGCTC	3 cut(s)	143, 592, 699
StyD4I	CCNGG	8 cut(s)	516, 654, 775, 780, 1489, 1617, 2889, 3312
StyI	CCWWGG	5 cut(s)	182, 1130, 1548, 1703, 1779
TaiI	ACGT	1 cut(s)	3240
TaqI	TCGA	4 cut(s)	137, 2088, 2533, 2766
TatI	WGTACW	4 cut(s)	1460, 2269, 2544, 3301
TseFI	GTSAC	7 cut(s)	20, 196, 1302, 1394, 1817, 1855, 2596
Tsp45I	GTSAC	7 cut(s)	20, 196, 1302, 1394, 1817, 1855, 2596
TspGWI	ACGGA	1 cut(s)	851
Tth111I	GACNNNGTC	1 cut(s)	18
Van91I	CCANNNNNTGG	3 cut(s)	350, 368, 2303
VpaK11BI	GGWCC	8 cut(s)	355, 859, 898, 1061, 1870, 2123, 2887, 3375
XapI	RAATTY	5 cut(s)	728, 994, 1947, 1993, 2315
XcmI	CCANNNNNNNNNTGG	2 cut(s)	365, 2207
XhoI	CTCGAG	1 cut(s)	136
XmaJI	CCTAGG	1 cut(s)	182
XmnI	GAANNNNTTC	2 cut(s)	1760, 2511
Zsp2I	ATGCAT	1 cut(s)	1762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.