Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002171

Physical Location & Seq

Genomic Coordinates Forward (+)

35995289 .. 36000317

Gene Structure 5029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00413640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGCCGTGTCGATGCCGCAACAGAGACCGGCCGGGGCCTTCGAGCTTCGAATGGAGCCCGGTTGTCGACGACGGGGATGTGAACAACGACGCCGTCGGAGAAGCCGTGGCCCCGTTGTTCGATGGCACGTACGACAAAGAAGGTTGCCGGCCTCACTCGCCGCACTCTTCGGCCGCAATCGGAACCGGAAGAATGAGAGAAGAGCTTGTTGGTGTAGACATGGCAAACATTCTTATGCTACTGTCATGTAGGTTAGAGACCAACTTCAAAAAATGCTCATCTTCCCCAAACCACGTGTTTGAGTGTAAAACCCGCAAACGCCAATTCCCGTCTTTCCAAGCTCTTGGTGGTCACAGAGCAAGCCACAAGAGGCCGAGAACGTTAATGGGTAGTGATCAAGATCCGAAAAGTGAGACCAAATCTGGGAAAGTCATGACGAAAAAGCACGAGTGCTCCATATGCGGGCTGGAGTTTAGTTCGGGACAAGCGTTGGGGGGTCATATGAGAATCGATCCGGGTTCGGACCCGATCGGGGCACTTGGGATGACATGGTTTGCCGGGATCAAACAAAAAGCGTTGATGGCGTGGTGCATTGTCCGGATCCGGTTCGGTCTTAGACTCGGGAACTGCAGCGGACACGGCCGTGTTCGTTTGTCATCGTGGCTTGGAGGTTTAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010045 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071289 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

226

Amino Acids

24.78

Weight (kDa)

9.4

Isoelectric Point (pI)

41.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	99 - 125	2.1e-08	C2H2-type zinc finger
zf-C2H2_6	PF13912	149 - 169	7e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37430 AT3G53600
fragaria_vesca	FvH4_6g14410 FvH4_6g14411
malus_domestica	MD04G1119600.v1.1 MD12G1136900.v1.1
prunus_persica	Prupe.6G249300_v2.0.a1
pyrus_communis	pycom04g10910 pycom12g13140
rosa_chinensis	RchiOBHm_Chr3g0467501 RchiOBHm_Chr3g0467521 RchiOBHm_Chr3g0467531 RchiOBHm_Chr3g0467541
rosa_laevigata	RLG00000024493 RLG00000024494 RLG00000024497 RLG00000024498 RLG00000024500 RLG00000024501
rosa_multiflora	Rmu_co8150280.1_g000001 Rmu_sc0000286.1_g000002 Rmu_sc0000286.1_g000003 Rmu_sc0000286.1_g000005 Rmu_sc0006408.1_g000010
rosa_roxburghii	Rroxscaffold_6G00413620 Rroxscaffold_6G00413630 Rroxscaffold_6G00413640
rosa_rugosa	Rorug03G0087700 Rorug03G0087800 Rorug03G0087900 Rorug03G0087900
rosa_samantha	Rh3AG135700 Rh3AG135800 Rh3BG157300 Rh3BG157400 Rh3BG157500 Rh3BG157600 Rh3CG157400 Rh3CG157500 Rh3DG158300 Rh3DG158400
rosa_wichuraiana	Rw3G012890 Rw3G012900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	66, 216
AccIII	TCCGGA	1 cut(s)	597
AciI	CCGC	6 cut(s)	16, 161, 174, 313, 462, 633
AclI	AACGTT	1 cut(s)	380
AclWI	GGATC	5 cut(s)	395, 506, 569, 595, 608
AcoI	YGGCCR	3 cut(s)	29, 171, 640
AcvI	CACGTG	1 cut(s)	295
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	1 cut(s)	131
AfiI	CCNNNNNNNGG	3 cut(s)	423, 462, 532
AflIII	ACRYGT	1 cut(s)	294
AgsI	TTSAA	1 cut(s)	268
AjuI	GAANNNNNNNTTGG	2 cut(s)	192, 224
AleI	CACNNNNGTG	1 cut(s)	642
AluBI	AGCT	3 cut(s)	45, 205, 341
AluI	AGCT	3 cut(s)	45, 205, 341
Alw21I	GWGCWC	1 cut(s)	455
Alw26I	GTCTC	3 cut(s)	18, 251, 407
AlwI	GGATC	5 cut(s)	395, 506, 569, 595, 608
Ama87I	CYCGRG	1 cut(s)	620
Aor13HI	TCCGGA	1 cut(s)	597
AoxI	GGCC	7 cut(s)	29, 35, 108, 149, 171, 371, 640
ApeKI	GCWGC	1 cut(s)	630
AspS9I	GGNCC	3 cut(s)	35, 109, 523
AsuC2I	CCSGG	4 cut(s)	33, 59, 516, 559
AsuII	TTCGAA	1 cut(s)	48
AvaI	CYCGRG	1 cut(s)	620
AvaII	GGWCC	1 cut(s)	523
BaeGI	GKGCMC	1 cut(s)	538
BamHI	GGATCC	1 cut(s)	600
BanII	GRGCYC	1 cut(s)	59
BauI	CACGAG	1 cut(s)	446
BbrPI	CACGTG	1 cut(s)	295
Bbv12I	GWGCWC	1 cut(s)	455
BbvI	GCAGC	1 cut(s)	642
BccI	CCATC	2 cut(s)	116, 574
BceAI	ACGGC	4 cut(s)	77, 89, 627, 655
BclI	TGATCA	1 cut(s)	394
BcnI	CCSGG	4 cut(s)	33, 59, 516, 559
BcoDI	GTCTC	3 cut(s)	18, 251, 407
BfmI	CTRYAG	1 cut(s)	628
BisI	GCNGC	4 cut(s)	16, 161, 174, 631
BlsI	GCNGC	4 cut(s)	17, 162, 175, 632
Bme1390I	CCNGG	4 cut(s)	33, 59, 516, 559
Bme18I	GGWCC	1 cut(s)	523
BmeT110I	CYCGRG	1 cut(s)	620
BmgT120I	GGNCC	3 cut(s)	35, 109, 523
BmiI	GGNNCC	6 cut(s)	36, 56, 111, 184, 525, 602
BmrFI	CCNGG	4 cut(s)	33, 59, 516, 559
BmsI	GCATC	1 cut(s)	2
BpmI	CTGGAG	1 cut(s)	488
Bpu14I	TTCGAA	1 cut(s)	48
BpuMI	CCSGG	4 cut(s)	33, 59, 516, 559
Bsa29I	ATCGAT	1 cut(s)	510
BsaAI	YACGTR	2 cut(s)	129, 295
BsaBI	GATNNNNATC	1 cut(s)	399
BsaHI	GRCGYC	1 cut(s)	90
BsaI	GGTCTC	3 cut(s)	18, 251, 407
BsaJI	CCNNGG	2 cut(s)	32, 105
BsaWI	WCCGGW	3 cut(s)	185, 597, 603
BsaXI	ACNNNNNCTCC	4 cut(s)	90, 120, 437, 467
Bsc4I	CCNNNNNNNGG	3 cut(s)	423, 462, 532
Bse118I	RCCGGY	2 cut(s)	27, 147
Bse8I	GATNNNNATC	1 cut(s)	399
BseAI	TCCGGA	1 cut(s)	597
BseCI	ATCGAT	1 cut(s)	510
BseDI	CCNNGG	2 cut(s)	32, 105
BseGI	GGATG	2 cut(s)	82, 549
BseJI	GATNNNNATC	1 cut(s)	399
BseLI	CCNNNNNNNGG	3 cut(s)	423, 462, 532
BseSI	GKGCMC	1 cut(s)	538
BseX3I	CGGCCG	3 cut(s)	29, 171, 640
BseXI	GCAGC	1 cut(s)	642
Bsh1285I	CGRYCG	4 cut(s)	32, 174, 531, 643
BshFI	GGCC	7 cut(s)	31, 37, 110, 151, 173, 373, 642
BshVI	ATCGAT	1 cut(s)	510
BsiEI	CGRYCG	4 cut(s)	32, 174, 531, 643
BsiHKAI	GWGCWC	1 cut(s)	455
BsiHKCI	CYCGRG	1 cut(s)	620
BsiSI	CCGG	9 cut(s)	28, 32, 59, 148, 186, 515, 558, 598, 604
BsiWI	CGTACG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	495
BslI	CCNNNNNNNGG	3 cut(s)	423, 462, 532
BsmAI	GTCTC	3 cut(s)	18, 251, 407
BsmFI	GGGAC	1 cut(s)	495
BsnI	GGCC	7 cut(s)	31, 37, 110, 151, 173, 373, 642
Bso31I	GGTCTC	3 cut(s)	18, 251, 407
BsoBI	CYCGRG	1 cut(s)	620
Bsp119I	TTCGAA	1 cut(s)	48
Bsp1286I	GDGCHC	3 cut(s)	59, 455, 538
Bsp13I	TCCGGA	1 cut(s)	597
Bsp143I	GATC	6 cut(s)	394, 400, 511, 528, 561, 600
BspACI	CCGC	6 cut(s)	16, 161, 174, 313, 462, 633
BspANI	GGCC	7 cut(s)	31, 37, 110, 151, 173, 373, 642
BspDI	ATCGAT	1 cut(s)	510
BspEI	TCCGGA	1 cut(s)	597
BspHI	TCATGA	1 cut(s)	432
BspLI	GGNNCC	6 cut(s)	36, 56, 111, 184, 525, 602
BspMAI	CTGCAG	1 cut(s)	632
BspPI	GGATC	5 cut(s)	395, 506, 569, 595, 608
BspQI	GCTCTTC	1 cut(s)	195
BspT104I	TTCGAA	1 cut(s)	48
BspTNI	GGTCTC	3 cut(s)	18, 251, 407
BsrFI	RCCGGY	2 cut(s)	27, 147
BssAI	RCCGGY	2 cut(s)	27, 147
BssECI	CCNNGG	2 cut(s)	32, 105
BssMI	GATC	6 cut(s)	394, 400, 511, 528, 561, 600
BssNI	GRCGYC	1 cut(s)	90
BssSI	CACGAG	1 cut(s)	446
Bst2BI	CACGAG	1 cut(s)	446
Bst4CI	ACNGT	1 cut(s)	243
Bst6I	CTCTTC	2 cut(s)	172, 195
BstACI	GRCGYC	1 cut(s)	90
BstBAI	YACGTR	2 cut(s)	129, 295
BstBI	TTCGAA	1 cut(s)	48
BstC8I	GCNNGC	3 cut(s)	149, 361, 464
BstDEI	CTNAG	1 cut(s)	614
BstDSI	CCRYGG	1 cut(s)	105
BstF5I	GGATG	2 cut(s)	82, 549
BstKTI	GATC	6 cut(s)	397, 403, 514, 531, 564, 603
BstMAI	GTCTC	3 cut(s)	18, 251, 407
BstMBI	GATC	6 cut(s)	394, 400, 511, 528, 561, 600
BstMCI	CGRYCG	4 cut(s)	32, 174, 531, 643
BstMWI	GCNNNNNNNGC	4 cut(s)	157, 459, 581, 639
BstSCI	CCNGG	4 cut(s)	31, 57, 514, 557
BstSFI	CTRYAG	1 cut(s)	628
BstSLI	GKGCMC	1 cut(s)	538
BstV1I	GCAGC	1 cut(s)	642
BstX2I	RGATCY	2 cut(s)	400, 600
BstXI	CCANNNNNNTGG	1 cut(s)	344
BstYI	RGATCY	2 cut(s)	400, 600
BstZI	CGGCCG	3 cut(s)	29, 171, 640
Bsu15I	ATCGAT	1 cut(s)	510
BsuRI	GGCC	7 cut(s)	31, 37, 110, 151, 173, 373, 642
BsuTUI	ATCGAT	1 cut(s)	510
BtgI	CCRYGG	1 cut(s)	105
BtsCI	GGATG	2 cut(s)	82, 549
Cac8I	GCNNGC	3 cut(s)	149, 361, 464
CciI	TCATGA	1 cut(s)	432
Cfr10I	RCCGGY	2 cut(s)	27, 147
Cfr13I	GGNCC	3 cut(s)	35, 109, 523
ClaI	ATCGAT	1 cut(s)	510
CseI	GACGC	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	4 cut(s)	220, 246, 433, 549
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	1 cut(s)	614
DpnI	GATC	6 cut(s)	396, 402, 513, 530, 563, 602
DpnII	GATC	6 cut(s)	394, 400, 511, 528, 561, 600
EaeI	YGGCCR	3 cut(s)	29, 171, 640
EagI	CGGCCG	3 cut(s)	29, 171, 640
Eam1104I	CTCTTC	2 cut(s)	172, 195
EarI	CTCTTC	2 cut(s)	172, 195
EclXI	CGGCCG	3 cut(s)	29, 171, 640
Eco24I	GRGCYC	1 cut(s)	59
Eco31I	GGTCTC	3 cut(s)	18, 251, 407
Eco47I	GGWCC	1 cut(s)	523
Eco52I	CGGCCG	3 cut(s)	29, 171, 640
Eco72I	CACGTG	1 cut(s)	295
Eco88I	CYCGRG	1 cut(s)	620
EcoO109I	RGGNCCY	1 cut(s)	35
EcoT38I	GRGCYC	1 cut(s)	59
FaeI	CATG	4 cut(s)	223, 249, 436, 552
FaiI	YATR	9 cut(s)	221, 236, 247, 434, 458, 460, 501, 503, 550
FaqI	GGGAC	1 cut(s)	495
FatI	CATG	4 cut(s)	219, 245, 432, 548
FauI	CCCGC	2 cut(s)	320, 455
FauNDI	CATATG	2 cut(s)	458, 501
FbaI	TGATCA	1 cut(s)	394
FblI	GTMKAC	2 cut(s)	66, 216
Fnu4HI	GCNGC	4 cut(s)	16, 161, 174, 631
FokI	GGATG	2 cut(s)	89, 556
FriOI	GRGCYC	1 cut(s)	59
Fsp4HI	GCNGC	4 cut(s)	16, 161, 174, 631
GluI	GCNGC	4 cut(s)	16, 161, 174, 631
GsuI	CTGGAG	1 cut(s)	488
HaeIII	GGCC	7 cut(s)	31, 37, 110, 151, 173, 373, 642
HapII	CCGG	9 cut(s)	28, 32, 59, 148, 186, 515, 558, 598, 604
HgaI	GACGC	1 cut(s)	98
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	4 cut(s)	223, 249, 436, 552
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HinfI	GANTC	2 cut(s)	507, 618
HpaII	CCGG	9 cut(s)	28, 32, 59, 148, 186, 515, 558, 598, 604
Hpy166II	GTNNAC	3 cut(s)	67, 82, 217
Hpy188I	TCNGA	4 cut(s)	98, 182, 405, 523
Hpy188III	TCNNGA	5 cut(s)	398, 433, 480, 598, 622
Hpy8I	GTNNAC	3 cut(s)	67, 82, 217
Hpy99I	CGWCG	4 cut(s)	71, 74, 92, 98
HpyAV	CCTTC	2 cut(s)	48, 134
HpyCH4III	ACNGT	1 cut(s)	243
HpyCH4IV	ACGT	3 cut(s)	128, 294, 380
HpyCH4V	TGCA	2 cut(s)	591, 630
HpyF10VI	GCNNNNNNNGC	4 cut(s)	157, 459, 581, 639
HpyF3I	CTNAG	1 cut(s)	614
HpySE526I	ACGT	3 cut(s)	128, 294, 380
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	4 cut(s)	223, 249, 436, 552
Kpn2I	TCCGGA	1 cut(s)	597
KroI	GCCGGC	1 cut(s)	147
KroNI	GCCGGC	1 cut(s)	149
Ksp22I	TGATCA	1 cut(s)	394
Kzo9I	GATC	6 cut(s)	394, 400, 511, 528, 561, 600
LguI	GCTCTTC	1 cut(s)	195
LmnI	GCTCC	2 cut(s)	54, 458
Lsp1109I	GCAGC	1 cut(s)	642
LweI	GCATC	1 cut(s)	2
MaeII	ACGT	3 cut(s)	128, 294, 380
MaeIII	GTNAC	1 cut(s)	350
MalI	GATC	6 cut(s)	396, 402, 513, 530, 563, 602
MboI	GATC	6 cut(s)	394, 400, 511, 528, 561, 600
MboII	GAAGA	4 cut(s)	159, 201, 212, 273
MflI	RGATCY	2 cut(s)	400, 600
MhlI	GDGCHC	3 cut(s)	59, 455, 538
MluCI	AATT	1 cut(s)	323
MlyI	GAGTC	1 cut(s)	612
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	3 cut(s)	162, 363, 662
MroI	TCCGGA	1 cut(s)	597
MroNI	GCCGGC	1 cut(s)	147
MseI	TTAA	2 cut(s)	383, 674
MslI	CAYNNNNRTG	2 cut(s)	233, 642
MspA1I	CMGCKG	1 cut(s)	633
MspI	CCGG	9 cut(s)	28, 32, 59, 148, 186, 515, 558, 598, 604
MspR9I	CCNGG	4 cut(s)	33, 59, 516, 559
MwoI	GCNNNNNNNGC	4 cut(s)	157, 459, 581, 639
NaeI	GCCGGC	1 cut(s)	149
NciI	CCSGG	4 cut(s)	33, 59, 516, 559
NdeI	CATATG	2 cut(s)	458, 501
NdeII	GATC	6 cut(s)	394, 400, 511, 528, 561, 600
NgoMIV	GCCGGC	1 cut(s)	147
NlaIII	CATG	4 cut(s)	223, 249, 436, 552
NlaIV	GGNNCC	6 cut(s)	36, 56, 111, 184, 525, 602
NmeAIII	GCCGAG	1 cut(s)	399
NmuCI	GTSAC	1 cut(s)	350
NspV	TTCGAA	1 cut(s)	48
OliI	CACNNNNGTG	1 cut(s)	642
PagI	TCATGA	1 cut(s)	432
PciSI	GCTCTTC	1 cut(s)	195
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 485
PdiI	GCCGGC	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	507
Pfl23II	CGTACG	1 cut(s)	129
PflFI	GACNNNGTC	1 cut(s)	92
PkrI	GCNGC	4 cut(s)	17, 162, 175, 632
Ple19I	CGATCG	1 cut(s)	531
PleI	GAGTC	1 cut(s)	612
PmaCI	CACGTG	1 cut(s)	295
PmlI	CACGTG	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	612
Ppu21I	YACGTR	2 cut(s)	129, 295
Psp1406I	AACGTT	1 cut(s)	380
PspCI	CACGTG	1 cut(s)	295
PspLI	CGTACG	1 cut(s)	129
PspN4I	GGNNCC	6 cut(s)	36, 56, 111, 184, 525, 602
PspPI	GGNCC	3 cut(s)	35, 109, 523
PstI	CTGCAG	1 cut(s)	632
PsuI	RGATCY	2 cut(s)	400, 600
PsyI	GACNNNGTC	1 cut(s)	92
PvuI	CGATCG	1 cut(s)	531
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
RseI	CAYNNNNRTG	2 cut(s)	233, 642
SalI	GTCGAC	1 cut(s)	65
SapI	GCTCTTC	1 cut(s)	195
SaqAI	TTAA	2 cut(s)	383, 674
SatI	GCNGC	4 cut(s)	16, 161, 174, 631
Sau3AI	GATC	6 cut(s)	394, 400, 511, 528, 561, 600
Sau96I	GGNCC	3 cut(s)	35, 109, 523
SchI	GAGTC	1 cut(s)	612
ScrFI	CCNGG	4 cut(s)	33, 59, 516, 559
SduI	GDGCHC	3 cut(s)	59, 455, 538
SetI	ASST	9 cut(s)	47, 131, 145, 207, 254, 297, 343, 383, 673
SfaNI	GCATC	1 cut(s)	2
SfcI	CTRYAG	1 cut(s)	628
SfuI	TTCGAA	1 cut(s)	48
SinI	GGWCC	1 cut(s)	523
SmiMI	CAYNNNNRTG	2 cut(s)	233, 642
Sse9I	AATT	1 cut(s)	323
SsiI	CCGC	6 cut(s)	16, 161, 174, 313, 462, 633
StyD4I	CCNGG	4 cut(s)	31, 57, 514, 557
TaaI	ACNGT	1 cut(s)	243
TaiI	ACGT	3 cut(s)	131, 297, 383
TaqI	TCGA	6 cut(s)	10, 41, 48, 66, 120, 510
TaqII	GACCGA	1 cut(s)	599
TasI	AATT	1 cut(s)	323
TauI	GCSGC	3 cut(s)	18, 163, 176
TfiI	GAWTC	1 cut(s)	507
Tru1I	TTAA	2 cut(s)	383, 674
Tru9I	TTAA	2 cut(s)	383, 674
TseFI	GTSAC	1 cut(s)	350
TseI	GCWGC	1 cut(s)	630
Tsp45I	GTSAC	1 cut(s)	350
Tth111I	GACNNNGTC	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	523
XcmI	CCANNNNNNNNNTGG	2 cut(s)	344, 463
XmiI	GTMKAC	2 cut(s)	66, 216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.